Onychostoma macrolepis: 131540340
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Entry
131540340 CDS
T09350
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
omc
Onychostoma macrolepis
Pathway
omc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131540340 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omc03019
]
131540340 (skic3)
Messenger RNA biogenesis [BR:
omc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131540340 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_16
TPR_11
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_MalT
Fis1_TPR_C
HAT_Syf1_CNRKL1_N
ARM_TT21_C
TPR_15
TPR-S
HAT_PRP39_N
SHPRH_helical-1st
PknG_TPR
TPR_21
Motif
Other DBs
NCBI-GeneID:
131540340
NCBI-ProteinID:
XP_058631011
LinkDB
All DBs
Position
05:8645980..8671701
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKSELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
TAYRKATELEPEQLLAWQGLANLYEKSDQADFKAELPKVYQKLITLYETSDKAKCFEVSK
KLVEVYQLEKNYLQVARVWRRLIQVREAEEGVEDLELLELWKEMTRLLQDTVEDQDNETQ
QHLISAFERALQLTIDVPSEAHRSLSQDYIKCLSKLPHEVAKLKEVCDATLSHYPTHSYP
LEALSEHYIRTGDCSEEAVRCFNRLLELDPNNSHTHFGLGIKACQDKKYEDAIKSIGLGL
KRMRSSIIGWYNLALAQLKMHKYSDSATASSQGLKSSVGNSDDWTHKLQRLKLEALVKTG
RDQDADEALQILTQISDAKNDPVLLALKGRAHLQKGQTEEAFQVSAELLSSHPGSVEGLT
LKGLVHVAKEQHKQAEESFLEALSGNPDNGELFFLLGRLFWNMGEEMRRDRSKAHTHLLK
AAKLDPYLGSVFRFLGHYYREVAKDQGRASGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DSALAVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDY
VPALKGLGECLLALARSALDDYLDGRAVDLIQNAIHYLFRALKQRPDLSCLWKLLGDACT
TSRTVSPNRAKVLVPGALCGMDPPDQGHTLDQRQLLTLGERCFGRALKLMPEAPSLWCDL
GLNYCHQSRLLGCLYPEEDQQPVLEKAIQCVKKAIMLDSANHTYWNALGVVSMAKGIENF
ALAQHCFIKSVKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAL
IAESVGSYDTMDLFRHTTELSTHTEGVKGYAFWVCSTLLDRSNRDSEIYLYNIVQMNAVS
AAQVALSKYTERIQSDPDAFIMLGYLNTHLQLRKQATEAYRRAVELLQASRHTDKLSFAL
RGYGRALSDDGQWEEAVRIYSSTPLEELHDLIGLALACFRSGRMTECVQAYEKALAVASS
EKEKACILTALALIQHRLGNIDHAKTLLFKCSMLKEPISESLQCLCSLGLVHGDVTLASA
TLTELLKLGEHVGGAVEERCLLTCTLLALQGNYSGVHREAARAIHRNPGNPSLWALLSRL
VPQYCPNKANGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRCNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLQGSAPRREDLERAHMTLVSEKVKGLQAEDGLLA
QALEGWVLQQAVTGLKQSGRYEQAETLCSQVLSVSPEHPVVFLMLRQVQCERLLLSGAGN
CVPPAVLDQLSAAVMANHTSVSAWHWLAEVYRSQGLLAQASVAYKQSLQLASQLGDHMGK
MSSLLRLALLALMPCLAGVCVSEWKDLVLEASTEVLKMGSSPVALLFQALLQFSMKMGAR
ETRRLLEKIVYASASGGSETIASVARWYLLRHLHAKDDLELIDTLLVKATAGRDNRLVDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtaaaatctgaactaaaaagtgccagagaagccatcaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaaacttgagaagaataactat
aatgcctgggtgtttatcggagtggcagctacagagctgcagcagccggatcaggcacag
accgcctatagaaaggccactgaactggagccagagcaactgcttgcatggcagggttta
gcaaatctgtacgaaaaaagtgaccaagcagatttcaaagctgagctgccaaaggtttac
cagaaacttattacgctgtatgaaacctcagacaaagcaaaatgttttgaagtgagcaag
aagttggtggaagtctatcagttggagaagaactatttacaggtggccagagtgtggagg
aggttaatccaggtgagggaggcagaggaaggggtggaggatttagagctgctggagctg
tggaaggagatgaccagactcttgcaggacactgttgaggatcaggacaatgagactcaa
caacacctgatatcagcatttgaaagagctttgcaattgacgatagatgtgcccagtgaa
gcccacaggagcctttcacaggactacattaaatgtctttccaagcttcctcatgaggtg
gccaagctaaaggaagtttgtgatgccacgctatcccactatccgacacactcctaccct
ctagaggcccttagtgagcactacatcagaacaggtgactgcagtgaggaagctgtccgc
tgtttcaaccgtctcttagaactggatccaaacaactcacacactcactttggtcttggt
attaaagcttgtcaggataaaaaatatgaggatgccataaaaagtattggtctaggattg
aagcgtatgcgctcctccatcattggctggtataatcttgctctggctcaactgaaaatg
cataaatactctgacagtgccacagcttccagccaagggctgaagtcgagtgtggggaac
tctgatgattggactcataagctgcagaggttgaaactagaggctctggtaaagacagga
agagaccaggatgctgatgaagctctgcagatccttacacagatttcagatgccaaaaat
gacccagtgcttttagctttgaaaggaagagctcacttgcaaaaagggcaaactgaggaa
gcatttcaggtttcagctgagctgctgagctctcacccaggatctgtggagggtctcact
ctgaaggggctggtgcatgttgcgaaagaacagcacaaacaagctgaagaaagctttcta
gaggctttatccgggaacccagataatggggagttgttcttcctgctggggcgcctgttc
tggaacatgggagaggaaatgcgaagggatcgcagcaaagcccatacacatttactcaag
gctgctaaactggacccgtatctcggttcagtgtttcgttttctgggtcattactataga
gaggtagcaaaagatcagggcagagccagcggctgctataagagagcgtttgagctggat
tcttctgatgcagaggctggagcggctactgtagacctcagcatggagcagggggacatg
gactcagctctggctgttctgcagtctgtaacggagagagccactcctggctctgctaaa
tgggcctggatgaggagagggctctaccacctcaagattggccagcatcaacaggccatt
gcagatctgcaggcggcgttgagggctgatcctcaggattgggtgtgctgggaatgttta
ggtgaggcttaccttaaccgcaggagtttcacagcagccctgaaagcattcgataaagca
catactctgcagcccacctctatctacagtctctatcagaccgctgccatcaaacagatc
ctcggtcggtttaaagaggctgctgcagagtacaggcagatcttagagcaggaggactat
gtgccggcattgaaaggtctgggtgaatgcttgctagccttggctagaagtgcacttgat
gactatcttgatggaagagctgtcgatttgatacagaatgccatccattaccttttcaga
gctttaaagcaaaggccagacctgtcgtgtctgtggaagttactaggtgatgcctgcacc
acctctagaactgtgtccccaaaccgagccaaagtgctggtgcctggagctctatgtgga
atggatccacctgatcagggccatacactggaccagagacagctcctcactctaggagaa
aggtgctttggtcgtgctttgaaactcatgcctgaggcccctagtctgtggtgtgacctt
ggcctgaactactgccaccaatccagactgctcggctgcttgtatcctgaagaggatcag
cagcctgtgctggagaaagccatacagtgtgtgaagaaggcgatcatgctcgacagtgca
aatcacacatactggaatgccctcggggtggtctccatggcaaagggaatagaaaacttt
gcacttgcacaacactgctttatcaaatcggtaaaagcggagtcaaataatgtggttgca
tggaccaaccttggtgctttgtatctgaagaagggaaatatagagctctcgcatgaagct
ttcaagattgctcagtctctagaacccctctatgtgaactgctggatcggacaggctctg
attgctgagtcagtgggaagttatgacaccatggatcttttcagacacaccacagaactg
agtactcatactgagggagtgaagggttatgcattttgggtttgctccacactgctggac
aggagcaacagagactcagagatctacctctacaacatagtccagatgaacgccgtctct
gctgcccaggtggctctgagcaagtacactgagaggattcagtcagacccagacgccttc
atcatgcttggatacctgaacacacacctgcagctgaggaaacaggccactgaggcatat
cgcagagctgttgagttgcttcaggcgtctcgtcacacagataagctcagctttgctctg
aggggttacggacgtgccctcagtgatgatggacagtgggaagaagcagtgcgtatttat
tcctccacaccactagaggagctgcatgatctcattgggctggcgctcgcatgtttcaga
agcggtcgcatgacagaatgtgttcaggcctatgagaaagctcttgcagttgcctctagt
gagaaggaaaaggcctgtatactcactgcactggccctgatacagcacaggctgggcaac
attgatcatgccaaaactcttctcttcaagtgctccatgctgaaagagcccatctcagag
agtctgcagtgtctgtgttctctgggtttggttcatggggacgtgaccctggcaagtgct
acgcttactgagctgttaaaactgggggaacatgtaggaggcgctgtggaggagcgctgt
ctgctcacttgcaccctgctggccctgcagggcaattatagtggcgtacacagggaggct
gctagggctatacacaggaacccaggaaatccttctctctgggctcttctttccagattg
gtcccacagtactgccccaacaaagccaatggaggtgctgtggctggcagtgtggcgtgt
catgccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcaattggcc
tcgggccggcactctggtgaagacagaagatgcaacgctctgaaaacaatccagagagct
gtgctgctgtgcccagatgatcctgctgggtgggcggggctaatggctgcctgtcacaca
gagaacactgcatgcttactccaaggctctgcccctcgcagagaagatctggagagggcg
cacatgactctggtgtctgaaaaagtgaagggcctgcaggcagaggacgggctcttggct
caggctctggagggatgggtgctgcagcaggccgtgactggactcaaacagagtggccga
tatgagcaggcagagactctctgctcccaggttttgagtgtatctccagagcatcctgtg
gtgttcctgatgttaaggcaggttcagtgtgagcgcctcctgttgtctggcgctggtaac
tgtgttcctcctgcagtgctggatcagctcagcgctgctgtcatggccaaccacacatct
gtgtctgcctggcattggttggcagaagtgtaccgttctcagggtctgctggctcaggcc
tctgtggcatataaacagagtcttcagctggcatctcagctcggtgaccacatgggaaag
atgagcagtctgctccgactagccctgctggcgctcatgccatgtttggctggtgtctgt
gtctctgagtggaaggatctggtgttggaggccagcactgaagtcttaaagatgggcagc
tcaccagtagctctgctcttccaagccttactgcagttctctatgaagatgggtgccagg
gaaacccgtcgcctgttggagaaaattgtttatgcttcagcctcaggtggctctgaaaca
atagcgtcagtggcacgctggtacctcctgcgccacctgcacgccaaagatgacctggag
ctgatagatactctgttggtgaaggctacagcaggaagagacaacagactggtggatttc
cacaggcgcctttacccatccagctga
DBGET
integrated database retrieval system
