Oryzias melastigma (Indian medaka): 112136582
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Entry
112136582 CDS
T07439
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04510
Focal adhesion
oml04512
ECM-receptor interaction
oml04518
Integrin signaling
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112136582 (col6a4a)
04518 Integrin signaling
112136582 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112136582 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112136582 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112136582 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112136582 (col6a4a)
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112136582 (col6a4a)
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112136582 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
112136582 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
112136582
NCBI-ProteinID:
XP_024114130
LinkDB
All DBs
Position
LG16:complement(28270867..28313757)
Genome browser
AA seq
2666 aa
AA seq
DB search
MAGRPLLCLVMAMCFHGNAAQDTVCTQEAVADIVFLVDGSWSIGTENFEQIRRFLSTLVS
SFDVSPDHVRIGLVQYSSDSRTEFLLRTFQNKEDVLRSITKLPYKGGGTMTGKGLDFLLN
QHFVEAAGSRASSSVPQIAVVITDGKSQDEVKTYAEKLQRRGIILYAIGIRDADTTQLKE
IAESRHVYSVSDFSALQDISQSIVQTLCTTVGEAKRQLGQLSPECVRATVADIVFLVDGS
SSIGIENFQEVRLFLRKVVSGLDIGPDKVRIGLAQYSDDPHQEFLLKDHSDASSLLAAIE
RLPYRTGQTETGKAISFLLSRYFIEEAGSRAKQQVPQIAVVITDGDSADEVEAPAQELRQ
QGVIVFGIGVGQANLQELQSIANRPAQRFLFTIDSYQALQRLTGSLLQTICVSMEDQRLA
LAERFADIFFLVDSGLSQTEVKTLLNRLTNQLNFSVSAYRLGLAQYGREVKVEFLLNKYN
TKEEIQDFIKRFRLSRPLASDPRNLGAALKYASANFFTEEAGGRAAVGARQFLVVLSGKD
SNDSVYKASRLIKSAGITVVGMSVGASMTEMSVVATSPYVYQIPIPNAAPTLRAIFKQQE
ADPDLTQDCRAAKVADIVFIIDQSGSIGTANFQLVRMFVHSIVSGLDVGQNRVRVGVVLY
NDKAEALVYLNTFKNKQNLLNFIKILPYSGGGTKTGAALNFTRESVFTKERGSRTNAGVQ
QVAVVITDGESQDSVLEAAAFLRRSGVIVYSVGVENANEVELIQMATHPPNEHVFIVNSF
AELTPLKLKLQKVLCYNILRQAVTAVGRSSAIKEGCVQTDEADIFFLIDHSGSIFPLDFQ
DMKKFIIEFIQTFRIGPQYVRIGVAKYADFPNLEFGLETYTDAQSLETAVLDIKQLGGGT
ETGRALTFMGTQFDKAKDSRGHKVPAYLVVITDGKSADQVKGPAELLRARGVTIYAIGVK
DADTEELQEISGDPRRMFFVNNFDALNPIKDNVITDICSADVCKDLPGDLIFLIDSSGSI
YPEDYEKMKDFMKSVISRSFIGKNEVHVGVLQFSSSQQLEFNLRRYFSKEEMLLAIDGMQ
QLGGGTLTGDALTAVAQYFESAFGGRPQLQQRLVVVTDGQAQDEVRGPAQALREKGVKIY
AIGVVDANTTQLLEISGSHDRMYSGRDFDALKDLESQVALQLCDPERDCKKTERADIIFL
VDGSTSISLENFRSMQKFMLSIVNQTTVGQNLTRFGVLLYSNDPKMMFKLDQYNTRQEVF
KAVSDLQPPSGDTYTGKALKFCLQFFSAENGGRAQLQVPQILMVITDGDATDRNNLLEPS
EALRGKGVSVFSIGVKGANRTQLEIMAGQDKSKVFFVDNFAALERLYKNITQELCNFTKP
VCEKQQADLVFLVDQSGSIQTGDYALMKNFTTELVKSFRVSQEMVRVGLAQFSSQFQHEF
YLNQFSTEAEVSDHILGMTQTGGGTNIGLALKEIRAYFESLRGSRRSEGISQNLVLITDG
ESQDDVEVPADELRALGIEMFAIGIGDVHDLELLQITGTPQRLFTVQNFGSLENIKQKVV
DTICKSKPSGDPSACTIDIAMGFDISARRVPGQTLVSGHNKLQAFLPEIARYLSTVPRLC
CTNTPVQSNLAYRVVSVDGRVLYDFNFEAHDEDVLRKVMSSSLSESTSFNSAMLRSFQEK
FRAQSGAGVKVLVIFSDGLDEDIMKLEQESDLLRQSGVSALLVVALEGVRDTAQLQMVEF
GRGFGYKLPLTIGMPSIGSTILKQIDTVADRKCCNVMCKCSGHEGLRGSRGPPGPKGGSG
QKGYPGFPGEEGVAGDRGFPGPSGPPGLQGCSGPRGQKGVRGLRGSRGEDGEDGLDGVNG
EQGVAGKDGARGERGDSGDPGIPGIRGVQGLKGQRGLRGDLGQPGADNTDTGPKGERGNP
GQPGAPGLDGRPGESGVNGNRGPEGRQGLPGEKGPPGPPGSDGEPGSAGPSGAQGSKGDR
GQPGQRGIPGFPGRQGDPGPAGPSGSAGRLGANGQKGEQGEPGIPGAPGPQGPRGAAGQD
GRDGFGPEGPKGVKGDPGFPGFPGLEGEAGLKGPKGLQGRKGSQARGGNSGLPGESGVNG
DPGYPGHRGPRGSPGGKAMSECQLITYIRDNCACTSDHSECPAYPTELVFGLDMSDDVTP
AAFERQRSALLALLEDINIAESNCPSGARVAVVGFNQRSMHLIRFQDYRRKSQLIDAVKN
IAPEKTKNKRFLGGAMRFVGQNLFKRVRAGMMVRKVAVFFSSGPTQDAEDVVTAVMEYRG
LQIVPVVISLRNAPAVRAAVEVDDSGNSIFVLLGRPQNQLSDLKKVKNCAICYDPCRRSE
DCAFIQDPPPPQQMAVDLAVVVDGSREVQADEFAGAQQLLGSVLEQLAVSAEPSQARVAV
VQQGSAQAPKLEFGLQTFQNRDLMKRHLLQNMQQQGGPSLLGRTLEYTLREVLPRADQTR
RKRVLLTVLATRTAYEDRSALRSASQRAHCDGVALFVLTVGDRYNQTQVEELASSPVQQH
LIHVDRLGAEGRSYAQRFFRVFLSALSKGTNQYPPLSLRAACSDLNGQGGVEKLDQSEVR
GDGLVVVSGVRVNEPQGVLQPELTSFNLKDACLQPLDQGSCQEYAMMWFFSSTENKCAPF
WYGGCGGNQNRFVTEEECQNTCVEGQ
NT seq
8001 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaggccgctgctctgcctcgtgatggccatgtgtttccatggaaacgcagct
caggacacagtctgcactcaggaggcggtggccgacattgtcttcctggtggacggctcg
tggagcatcggcaccgagaactttgagcaaatccgtcgctttctgtccactctggtcagc
agcttcgatgtcagtccagatcatgtccgcatcggcctggtccagtacagcagcgactcg
cgcaccgagttcctcctcagaaccttccagaacaaggaggacgttctgcggagcatcacc
aagttaccctacaagggcggcgggaccatgacggggaaaggcctggacttcctgctgaat
cagcactttgttgaagcagctggaagccgcgccagcagcagcgtgccgcagatcgccgtg
gtgataaccgatggaaaatctcaggatgaggtgaagacctacgcggagaagctgcagagg
cggggaatcattctgtacgccatcggcatcagagatgccgacacgacccagctgaaggag
atcgccgagagccggcacgtctacagcgtgtcggacttttccgcgctgcaggacatttct
cagagcatcgtccagacactgtgcaccacggtgggggaggccaagcggcagctggggcaa
ctgtctccagaatgtgtgagagccaccgtggccgacatcgtcttcctggtggacggttcc
tccagcattggcattgagaacttccaggaggtccggctgttcctcagaaaggtggtgtcc
ggtctggacattggcccagataaggttcggattggcttggctcagtacagcgacgacccc
caccaggagttcttgctgaaggaccactccgacgcttcatccctgctggctgcaatcgag
aggttaccctacagaactgggcagacggagacgggcaaggccatcagcttcctgctgtct
cggtactttatagaggaggcggggagccgggccaagcaacaggtgcctcagattgctgtg
gtgatcacagacggggactcggcagacgaagttgaggcgcctgctcaggagctgcgccag
cagggggtcattgtgtttggcatcggcgtgggacaggccaacttgcaggagctccagtcc
atcgccaaccggcccgcacagcgcttcctgttcaccatagacagctaccaggccctgcaa
aggctgaccggcagcctgctgcagaccatctgcgtgtccatggaggaccagaggctggca
ttggcggaaaggtttgcggacatctttttcctggtggacagcggcctttctcagacggag
gtcaagaccctcctcaaccgactcaccaatcagctgaacttcagcgtgtctgcctaccgt
ttgggcctggctcagtacggcagggaggtgaaggtggagttcctgctcaacaagtacaac
accaaagaggaaatccaggatttcataaagcgcttccgcctttctcggcccctggcctcc
gatccacgtaacctgggcgccgccttaaagtacgccagcgccaacttcttcaccgaggag
gcagggggccgggcagcagtgggcgcccgacagttcctggttgttctgagcgggaaggac
tccaatgactctgtgtacaaggcctcccgtctgatcaagtctgccggcataaccgtggtt
ggaatgagtgtcggagcatccatgacagaaatgagcgtggttgccacttccccgtacgtc
taccagatccccattccaaatgcggcaccgacactcagagcgatctttaaacaacaggaa
gcagatcctgatctgacccaagactgcagagcggccaaagtggcagacattgtcttcatc
atcgatcagtccggaagcatcggaacagctaacttccagctggtccgcatgtttgtgcac
tccatcgtgagtgggctggatgtgggtcaaaacagagtccgcgtgggcgtcgtcctgtac
aacgacaaggccgaggcgctggtctacctcaacaccttcaagaacaagcagaatcttctg
aacttcatcaagatcctgccttacagcggaggaggaaccaagactggagctgctctgaac
tttacccgtgagagcgtcttcaccaaggagaggggcagcaggaccaatgcgggtgtccag
caggtggcagtggtgatcacagacggggaatctcaggacagcgtgcttgaggcggcagct
tttcttcgccgctctggggtcattgtttactctgtgggagtggaaaatgccaacgaggtg
gagctgattcagatggccacccacccccccaatgagcatgtgttcattgtgaacagcttt
gctgaactgacccccctgaaactgaagctacagaaagtgctctgctacaacatcctgcgc
caagcggtgacagccgtgggccgaagcagcgccatcaaagaaggatgtgtccagacagat
gaagcagacatcttcttcctgattgaccactctggcagtatcttcccattggacttccaa
gacatgaagaagttcatcattgagttcatccagaccttccgcatcgggccgcagtatgtc
cgcataggcgtggcaaagtatgcagattttccaaacttggagtttggactggaaacgtac
acggatgctcagagtctggagacagcggtgctggacattaaacagctggggggtgggaca
gaaactggaagggctctgactttcatgggaactcaatttgacaaagccaaagactctcgg
ggccacaaagtcccagcatacctggtggtcatcacggatgggaagtctgctgaccaggtg
aagggaccagcagagctgttgagggccagaggagtcaccatctacgccattggggtaaag
gacgcagacacagaggagctgcaggagatctctggagacccgaggaggatgttcttcgtc
aataactttgatgccctgaaccccatcaaggacaatgtgatcacagacatctgctctgca
gacgtttgcaaggacttaccaggagacctgatcttcctgattgacagctccggcagcatc
tatccagaagactacgagaaaatgaaagacttcatgaagtctgtcatcagcaggtccttc
attgggaagaacgaggtgcacgttggtgtcttgcagttcagctccagccagcagctggag
ttcaacctccgccgttactttagcaaggaggaaatgctgctggccatcgatggcatgcag
cagctgggagggggcactctgacgggcgacgccctcaccgccgtggcgcagtactttgag
tcagcgtttggagggcgtccacaactgcagcagaggctggtggtggtaaccgacggacag
gctcaggatgaggtccgaggcccggcgcaagcgctcagggaaaaaggggtgaagatttac
gccatcggagtggtcgatgccaacaccacgcagctgctggagatcagtgggtcacatgac
aggatgtactctgggagagactttgatgctctgaaggacctggagagtcaggtggctctg
caactgtgtgacccagagagagactgcaagaagaccgagagggcggacatcattttcctg
gtggacggttccaccagcatttctctggagaacttcagaagcatgcagaagttcatgctg
tccatagtgaaccaaaccaccgtcggtcagaacctgactcgcttcggtgtccttctctac
tccaatgacccaaagatgatgttcaagttggaccagtacaacaccagacaggaggtcttc
aaagccgtatcagacctccagcccccatctggagacacctacaccggcaaggctctgaag
ttctgcttgcagttcttcagtgcagagaatggagggcgagcacagctgcaggtccctcag
atcctgatggtgatcacagatggagacgccaccgaccggaacaacctgcttgagccgtca
gaggcgctgagaggaaaaggagtcagcgtcttcagcatcggagtaaagggggctaacagg
acgcagctggagatcatggccggtcaagacaagtcaaaagtgttctttgtggacaacttt
gctgccttggagcgtctctacaaaaacatcacgcaggaactctgcaacttcaccaaacca
gtgtgtgagaagcagcaggctgacctggtgttcctggtggatcagtctggcagcatccaa
acgggggactatgccctcatgaagaacttcaccaccgagctggtgaaaagcttcagagtc
agccaggagatggttcgggtcggactggcccagttcagcagccaattccagcacgagttc
tacttgaaccagtttagcacagaggcggaggtgtcggaccacatcctgggcatgacacag
actggtgggggcaccaatatcggactggctctgaaggagatcagggcatattttgaaagc
ttgcggggaagccggcggtctgaaggcatctcccagaatctggtgctgatcactgacgga
gagtctcaggatgacgtggaggttccagctgatgagctcagggctctcgggatcgagatg
tttgccattggcattggagacgtccacgatttggagctgctgcagatcaccggcacccca
cagaggctcttcacggtgcagaactttggcagcttggagaacatcaaacagaaggtggtc
gacaccatctgcaagtcaaaacccagcggagatccatccgcctgcaccatcgacatcgcc
atgggctttgacatctctgcaagaagagttcccggacagactctggtcagcggccacaac
aagctgcaggccttcctgccggaaattgcccggtacctctcaacggttccccgcctgtgc
tgcaccaacacccccgtgcagagcaacctggcctaccgagtggtgagcgtggatggacgc
gtcctctacgactttaactttgaggcccacgatgaggacgtgctgaggaaagtcatgtcg
tccagtttgtccgagtccacctctttcaacagcgccatgctgaggtccttccaggagaag
ttcagggcccagtccggagccggagtgaaggtgctggtgatcttctcagatggcctcgat
gaggacatcatgaaactggagcaggaatcagatctgctgagacagtcgggagtcagtgct
ctgttggttgtggccctggagggcgtccgggacaccgcccagctacagatggtggagttc
ggtcggggattcggatacaagctgcctctgactatcggaatgccaagcatcggcagcacc
atccttaagcagattgatacagtggctgacaggaagtgctgcaacgtcatgtgcaagtgt
tcaggccacgagggtctgcgaggctctcgtgggcccccaggaccaaagggcgggtcggga
cagaagggttatcccggcttccctggggaggagggcgtcgccggtgacaggggcttccca
ggaccgagtgggcctccgggtctgcagggatgttctggacccagaggccagaagggggtc
aggggcctgagggggagcaggggtgaagacggagaggacggactggatggagtcaatgga
gagcagggagtggcgggaaaggatggagcccgaggagagcgaggagactctggggacccg
ggtatcccgggtatcagaggggtgcaggggctgaaaggacagcgaggactgagaggagat
ctgggtcagccgggcgctgataacactgacactgggcctaagggggagcgtggtaatcct
ggtcaaccgggggcccccgggttggacggccggccgggggagagtggagtcaatggaaac
cggggtccagaaggacggcaaggacttcctggtgagaagggtccaccaggaccccctggc
tctgatggagaaccaggctccgcaggaccctctggtgcacagggatccaagggggaccga
ggtcagcctggacagagaggaatccccggtttccctggacgtcagggcgatcctggacca
gctggaccttctggatcagccggtcgccttggcgctaacggacagaagggagaacaagga
gaacctggaatcccaggagctcccggacctcaggggcccagaggagcagcaggtcaggac
ggcagagacggatttggacctgagggacctaaaggtgtcaagggagatcccgggtttcct
ggattcccaggtctggagggtgaggccgggttgaagggacccaaagggctccaggggcgt
aaggggagccaggcccgcggggggaactctggccttccaggagaatctggcgtgaacgga
gacccaggatatccgggccacaggggcccccgaggttctcctggaggcaaagccatgtct
gagtgtcagctgatcacctacatccgagacaactgcgcatgcacctctgatcactctgag
tgcccggcctatcccaccgagctggtcttcggtctggacatgtcagacgacgtgactccg
gccgccttcgagaggcagcgctccgccctccttgccctgctggaggacatcaacatcgcc
gagagcaactgtccatcgggcgcccgcgtggccgtggtgggcttcaaccaacgcagcatg
cacctgatccgcttccaggactaccgccgcaagtctcagctgattgacgccgtgaagaac
atcgccccggagaagaccaagaacaagcgcttcctgggcggcgccatgcgcttcgtgggt
cagaaccttttcaagcgcgtgcgggcagggatgatggtgaggaaggtggcagtgttcttc
tccagcgggcccacgcaggacgctgaagacgtggtgacggccgtcatggagtaccgcggc
ctgcagatcgtcccggtggtcatctccttgaggaacgctcctgctgtcagagctgcagtg
gaggtcgatgactctggaaactccatcttcgtcctcctggggagaccacagaaccagctg
tccgacctgaagaaggttaagaactgtgctatctgctacgacccctgcagacgctcggag
gactgcgccttcatccaggacccgcccccgcctcagcagatggcggtggacctggcggtg
gttgtggacggctccagggaggtccaggcggacgagttcgccggcgctcagcagctgctg
ggctcggttctggagcagctggccgtgagtgcagagcccagccaggcccgggtggccgtg
gtccagcagggctccgcccaggcccccaagctggagttcggcctacagacctttcagaac
cgggacctgatgaagagacacctcctccagaacatgcagcagcagggtggcccctccctg
ctgggacggacgctggaatacaccctgagggaggtgctgccgagggcggaccagacccgg
cggaagagggttctgctgaccgtgctggcgacccggacggcctacgaggaccggagcgcg
ctcagaagcgcctcccagagggcccactgtgacggggtggcgctgttcgtgctgacagta
ggagaccgctacaaccagacgcaggtggaggagctggccagctcacctgtgcagcagcac
ctgatccacgtggaccggctgggggcggaggggcggagctacgcccagcgcttcttcagg
gtcttcctgtccgcgctcagcaaggggacaaaccaatacccccccctcagtttaagagca
gcctgtagtgacctgaacggccaggggggggtggagaagctggaccagtcagaggtcaga
ggagatggactggtggtggtctctggagtcagagtcaatgaaccacagggcgtgctgcag
ccagagctcaccagtttcaacctcaaagacgcctgcctgcagccgctggaccagggctcc
tgccaggaatacgccatgatgtggttcttcagcagcaccgagaacaaatgcgctcccttc
tggtacggaggctgcggcgggaaccagaaccgcttcgtaacggaggaggagtgccagaac
acgtgtgtggaggggcaatga
DBGET
integrated database retrieval system
