Oryzias melastigma (Indian medaka): 112147160
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Entry
112147160 CDS
T07439
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112147160 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112147160 (chd8)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112147160 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_CHD1_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
112147160
NCBI-ProteinID:
XP_024129092
Ensembl:
ENSOMEG00000012832
LinkDB
All DBs
Position
LG17:22992224..23011848
Genome browser
AA seq
2596 aa
AA seq
DB search
MADPIMDLLEDTPLFNLDGLPDDTFSQGSSDPVEEALKLALGQVDPTMDADPTPDLTVSS
NLGVPVAASAFLDPASVQVSSQPVPVAQTVSAAPVPTMTPATVEAVPQVQPQAVMPITSN
SSGIGSSTVLLGSPLTVSSPSATSATTQQLTQIAHQLTPQQLAAITQQGAGKIVILKGPQ
GQAQVLQTVSGTTPQTGGKVIRVLSGTPLKPGMSILQGGTILNQASPGQAQVKVSAAGVQ
RLLQSPNGPVKQVLLTSMPQQVQQTQGQPVQVQIATQAQMAQGQTTVQVQPQVQAAQVHH
QGQAAQIQVQPQSQTAQIQVQTQGQVQLQSPLQAQTPGGEAKRITLVLQQPSQTVSATPV
GQAVATQQQVTQIQATPAGQQPQQQATRLVLGQLPGGKLVLQGSQLAALTQARAAGQAGG
QPKVLTLQLQVQQQPNQQGGVKYQLVSGAGNTGSPQVLQISQGQGGQRVAVPLKMLLQPQ
TSSASSTGGTVSVVKVINAPSTGASSSASAPPQAIRISKAPGEPASVRRVEILCKQEKAN
RIVAEAIARAKARGEKNLPRVLNQDELPNTQSSPEIGGTITVVSSKKKSSGGGSKKKSPM
SGGLVSKTPAGGDKKGKVKMVGGTITIAGGAVLPGIGNKSKSKTKANTITLVGAKKRKRN
GSSDHSDGELSPPSPVALDDDMTMKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDVITT
AAAVASISGGTVAQLKPEVELDGDGLPSMQFFVENPSEEDAAIVDKVLSMRIIKKEVVPG
QYTNAEEFFVKYKNYSYLHCEWATLEQLEKDKRIHQKIKRFKTKHAQMRHFFQEDEEPFN
PDYVEVDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVEEFGKIQN
RQPRLKRTVRPPASSWKKLEETREYKNGNVLREYQLEGVNWLLFNWYNRQNCILADEMGL
GKTIQSIALLSEVYTAGIQGPFLVIAPLSTITNWEREFCTWTQMNAIVYHGSLASRQMIQ
QYEMYCKDDKGHLIPGAYKFDALITTFEMVLSDCPELREISWRCVIIDEAHRLKNRNCKL
LDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLRDFGDLKTEEQVQK
LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSLGANSNS
NVPNLLNTMMELRKCCNHPYLINGAEEKIVAELREVYDPLAPDFHLQALIRSAGKLVLLD
KLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPD
SDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT
RNSYEREMLDKASLKLGLDRAVLQSMSGNKESNNNGIQQFSKKEIEDLLRKGAYAAIMDE
NDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRNDIALDDPEFWQKWA
KKADIDMDSINQKNTLVIDTPRIRKQTRQFSSLRGEGGDLSDLDSDDEYPPANSRHSRSS
RRADRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILLHARCKRRLSERDVETICRVILVFC
LIHYRGDENIKSFIWELITPPENGREPQTLLNHSGLSIPVPRGRKGKRVKAQSTFDIQKV
EWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGEHADAVLKGADIRDVD
IWMPEMEQQEVPAAWWDSDADRSLLAGVFKHGYEMYTTMRADPRLCFVERVGRPDDKAID
AEQHTGDTEMGDDADFDKYSEDPEFKPASRHTKELFDEADSMNVEDEISVEDKVGPAVIE
SVPSQSGVCDWPSSSTLTARLRRLITAYQRSYRQEQLKMEAEAKGDRRRRRCEQASKLKE
IARQERQQRWTRREECDFYRVVSTFGVEKIKKEPGLPESSDAEFDWTRFRTFARLDKKTD
ESLSRYFRSFVAMCRRVCHLRPAHGEDQPEPSQMVAPITEERASRTLYRISLLRRLRERV
LPHPCLEERLRLARPSSELPAWWKMPEHDHQLMFAASVHGVSRTELSIFPDPQFTFSSAR
DEFIQNQQAPPPPPPPPPPPPIMTLIQPRAEVDMSGLKEEGSDHSGHLLGSEALAELQST
PLSHHSGKVQGQSWGFKRSRERGERPKGEGGSDSDSDSDSGSSSSDRSGSSDDSGESEEE
VEGGAMKVRDMDEENSLLSMTPSQDGLPPPDPIRVDWPKDRVLINRLDNLCTLVLSGQWP
SGRRYLPEAQLNLSSEVTGDELAFSRMIRKPPCPPSVLGPDGEDGEFTVKLLKEEGLKLT
FSKQALMPNGSGGEGSSRKKRKDQEFSDIDGLHDSLERTPRRRDPPTWLKENPEYEVEGD
MLELLVNRSKRKRRRRADKAITGTEKVKIINMMTGKKLGAAFCPMLQELRVYLEENPDAA
VSPEWSETVRKSGFLPESLFNRLLAEHSEIQKKSRRHHHHHHHHHHHHYHTPEPVSEDPN
LDGVEEETLVSDGAYMMDEEDLETSHNFLSGPDFDVKMEGGDSLSQGDYDSSDQEALLED
VIIAQKDSDSSSSSED
NT seq
7791 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctcctggaggacacgcccctgttcaacctggatggcctt
ccggatgacacattttcccagggttcttcagacccggtggaagaagctttaaagctggct
ttggggcaagtggatccaacgatggacgcagatcccacccctgacctcacggttagctcc
aacctcggcgttcctgtagcagcgtctgccttcctcgacccggcgtctgtgcaagtttct
tcacagccagtgccggtcgctcagactgtttctgccgctccggttcccaccatgactcct
gccacggttgaggctgtacctcaggtgcaaccccaggccgtcatgcctattaccagcaac
agcagcgggatcggtagtagcactgtccttctgggttcacctctgactgtttccagcccc
tcggctacctccgccaccacgcagcagctcacacagatagcgcaccagctcactccccag
caattagccgctataacgcagcaaggggctgggaagattgtcatcctaaaaggccctcag
ggccaagcccaagtgttgcagactgtatcgggcactacaccccagacgggcggaaaggtc
atacgtgttttgtcaggcactccgcttaagcctgggatgtctatattgcaggggggcaca
atcttgaatcaggccagtccgggacaagcccaagtcaaggtgagtgctgcaggagtgcag
cggcttctgcagtctcccaacgggccggtgaaacaagtgttgctcacatccatgcctcag
caggtacagcagacacaaggccagcctgtgcaggtgcagattgctacacaagcacagatg
gctcagggccagaccacagttcaagttcaaccccaggtccaggctgctcaggtacatcat
caaggccaagctgctcagatccaagtccaaccccaaagtcagaccgcccaaatccaggtc
cagacacagggtcaggtccagctccagtcacctttacaggcacagactccgggtggtgag
gcaaagcgcatcaccttggttctccagcagccgtcccagactgtgtctgctactccggtg
ggtcaagctgtcgccactcagcagcaggtcacgcagatccaggcgactccagctggccaa
cagccgcagcagcaagccactcgactggtgcttggtcagctacccggtggaaaacttgtg
ctccagggaagtcaactcgcagccctgactcaggctcgagcagcgggccaggcagggggg
cagcccaaagtcctcacccttcagctgcaagtgcaacagcagcccaaccaacaggggggc
gttaagtatcaacttgtgtcaggagctggaaatacgggcagtccgcaggttttgcagata
tcccagggtcaaggaggacaaagagttgcagtgccgctcaagatgcttctacagccacag
actagctcggcctcgtcaactggtggcaccgtctctgtggtgaaggtcatcaacgccccg
tcaaccggcgcctcgagctcagccagcgctccaccccaggccatccggatctccaaggcc
ccaggcgagccggcgtccgtaaggcgtgtggagatcctctgcaagcaggagaaggcaaac
cgcatcgtggctgaggccatcgcccgggccaaagcgcggggcgagaagaacctcccccgg
gtcttaaaccaagacgagcttccaaacacgcagtcctccccggaaatcgggggtaccatt
accgtggtgtcctcgaagaagaaaagcagcggcggaggaagcaaaaagaaaagcccaatg
tctggcgggctggtgtccaaaactccagcagggggcgacaaaaaggggaaagtgaagatg
gtgggaggaactattactatcgccggaggtgcggttttgccgggaattgggaacaagagc
aaaagcaaaactaaagcaaacactatcactcttgtgggagcaaagaaaaggaagagaaat
ggttcatctgaccactctgatggggagctgagccctccatcacctgtcgccctggacgac
gacatgaccatgaagaggcgttccaaccgcgtggtaaaaaggaaaaaatacacagaggac
ctggacatcaaaataacagacgacgaagacgagcaagaagacgtggacgtgataacgacg
gcggcagctgtggcgtcaatcagtggagggacggtggcgcagctgaagccggaggtggag
cttgatggtgacggacttcccagcatgcagttctttgtggaaaatccaagtgaggaagat
gctgccattgtagataaagttctttctatgaggataatcaaaaaagaggttgttcctggc
cagtatactaatgctgaggagttctttgtaaaatacaagaattactcatacttgcactgt
gaatgggccactttggagcaactggagaaagataagaggatccatcagaagatcaagagg
tttaagaccaaacatgcacagatgaggcacttcttccaggaggatgaggagccttttaac
cctgactatgtggaagtggacaggatcttagatgtgtctcacagtgtggataaggacaat
ggcgagcctgtcatctactatttggtcaagtggtgctctctgccatatgaagatgctacc
tgggagctcaaagaggatgttgatgagggaaaagtcgaagaattcggcaaaattcaaaac
agacaacctcgtctgaagagaactgtacggccgcctgccagttcatggaaaaagctggaa
gagacccgggaatacaagaacggcaacgtactgagagagtatcagctagagggagtcaac
tggctgcttttcaactggtacaacagacaaaactgcatcctagcagatgagatgggttta
ggaaagacgatacagtccatcgctctgctgtctgaggtgtacactgctgggattcagggc
cccttcctggtcatcgcccctctctccaccatcactaattgggagagagagttttgcacg
tggacccaaatgaacgccatcgtctaccacggcagcctggccagcaggcagatgatccag
cagtacgagatgtactgtaaagatgataagggacacttgatcccaggggcatacaagttc
gacgccctcatcaccacgtttgagatggtgctgtccgactgcccagaactgagggagatc
tcgtggcgttgtgtgatcattgacgaggctcaccgccttaagaatcgcaactgcaagctt
ttggacagtttgaaaatgcttgacctggaacacaaagtgctgttgacgggcactcctctc
cagaacaccgtggaggaactcttcagtctgcttcatttcttggagcctgctcagttcccg
tctgaaatcgaatttctcagagacttcggagacctcaaaacagaagagcaggttcagaaa
ctgcaggcaatcctgaaaccgatgatgctgcgaagactcaaggaggatgttgagaagaac
ttggcacccaaacaggaaaccatcattgaggtggagttgactgatgtccagaagaagtat
tatagggccattctggaaaggaacttcagttttctcagcctcggcgcaaacagcaacagc
aacgttcccaacctgctcaacaccatgatggagctccgcaagtgctgcaaccacccctac
ctcataaacggtgcagaagagaagatcgtcgcagagctgagggaggtgtacgacccgctg
gcccctgactttcacttgcaggcattgattcggtcagcaggaaaactggtgttattggac
aagctgctgcctcggctcaaggctggaggccacaaagtgctcatcttttctcaaatggtt
cgctgcttagacattctggaggactacctcatcaacaagagatacctttatgagcggata
gacggcagagtgcgtgggaacctgcgacaggccgccatcgatcgtttcagcaagccggac
tcggaccgcttcgttttcctgctgtgtacccgggccggtgggctcggcatcaacctgaca
gctgctgacacttgtgtcatatttgactctgactggaacccccaaaatgacctccaggct
caagcacgatgtcatcgtatcggtcagtcaaaagcggtgaaggtctaccgtctcattact
aggaattcttatgagagggaaatgctggataaagcaagtctgaagctcggactggacaga
gcggttctgcaaagcatgagcggcaacaaagaaagcaacaacaacgggatccagcagttt
tccaaaaaggagattgaagatttgttgaggaagggagcttacgcagccatcatggatgag
aacgacgagggcagccgcttctgtgaagaggacatcgaccagatccttcagcgacgagcc
accaccatcaccattgagagtgaaggcaagggctccaccttctccaaggccagctttgtg
gcctctgagaaccgcaatgacatcgccctggacgaccccgaattctggcagaagtgggcc
aagaaagctgatattgacatggattccatcaatcagaagaacacacttgtgatcgacacc
cccaggattcgaaagcagactcgtcagttctctagtttacgtggcgaagggggagacctg
tctgatctggacagcgatgacgagtatccacctgccaactccaggcattcacgttcctcc
cgacgcgccgaccgtcacagcggaggcggttacggccgaaccgactgcttcagggtggag
aaacaccttcttgtatacgggtggggtcgttggagagatatcttattgcacgccagatgt
aaaaggcgcctaagtgaacgggacgtggagaccatctgtcgtgtcatcttggtcttttgt
ctcatccattaccgcggtgacgagaacataaagagttttatctgggagctcatcactcca
cccgagaacggccgggaacctcaaacactacttaaccattctgggctttctatccccgtc
ccaagaggccgtaaaggtaaaagggtaaaggcccagagcacatttgacatccagaaagtt
gagtggatccggaagtacaatcccgacacgcttctgctcgatgacagctaccgcaagcac
ctcaagcaccaatgcaacaaggtgttgctgagggtgcgtatgctgtactacctaaaacaa
gaagtgatcggtgagcacgcagacgctgttctgaaaggagccgacatcagggatgttgat
atctggatgccagagatggagcagcaggaggtcccagctgcatggtgggactcagatgct
gaccgctcactgcttgctggtgttttcaagcacgggtatgagatgtacaccaccatgcgg
gcagacccccgcctctgcttcgtggagagagttggtcgacctgatgacaaggccattgat
gctgagcagcacacgggggacacagagatgggagatgatgctgactttgacaaatactca
gaggatccagagttcaagcccgcatcaagacacaccaaagaactttttgacgaggctgat
tctatgaacgtggaagatgagatttctgtggaggacaaagtcggacctgcagtcatagaa
agcgtccccagccagagtggcgtttgcgactggccctccagttcaacgctgacggcgagg
ttaaggcggctgatcacagcttaccagcgcagctacagacaggagcagctgaagatggag
gcagaggctaaaggtgaccgcaggcgccggcgctgtgagcaggccagcaaactgaaagaa
attgcaagacaagaaagacaacaaaggtggacgcgtagagaggagtgcgatttctaccgt
gtggtttcaacttttggagtagagaagataaagaaggagccaggtcttccagagagcagt
gacgccgagtttgactggacccgtttccgcacgtttgcacgtctggacaaaaagactgac
gagagcctcagtcgatacttccgttcttttgtggccatgtgccgacgggtctgtcacctc
cgcccagctcatggtgaagatcagccagaaccctcgcagatggtagcccccatcacagag
gagcgcgcctcgcgtactctctatcgcatcagccttttgcgccgccttcgtgagcgcgtt
cttccacacccctgcttggaggagcgcctccgcctggcccgacccagctcagagctcccc
gcgtggtggaaaatgcctgaacacgaccaccagctgatgtttgcggcttcggtgcacggc
gtcagccgcacagagctctccattttcccagacccacagttcacttttagttctgcccga
gatgaattcatccagaaccagcaggccccgcctcctcctcctccaccacctcccccgcca
cctatcatgactctcattcagcctagagctgaggtggacatgtctggactgaaggaggag
ggctctgatcacagcggccatctgcttgggagtgaagctctcgctgagttgcagagtacg
cctttgagccaccacagcggcaaagtacaaggtcagagctggggcttcaagaggagcagg
gaaagaggagaaaggccaaagggtgagggggggtctgattctgattcggactcggactca
ggctcgtcatcctcggaccgatcgggcagcagtgacgacagcggagagagcgaggaggag
gtggaaggaggagccatgaaggtgagagacatggatgaagagaacagtctgctctccatg
actccatctcaggatggccttccacctccggatcccatcagagttgactggcccaaggat
cgagtgttgatcaaccgcctggataatttatgcacccttgtcctgagtggtcagtggccc
tcaggtcggcgctacctgcctgaagcccagctcaacctaagctctgaagtcacaggagac
gaactggccttctccaggatgatccgaaaacccccctgcccacccagtgtcctcggacca
gatggagaagatggagagttcactgtgaaactcctaaaggaggagggcctgaagctgacc
ttttctaagcaggctttgatgccaaatggatcaggaggagagggcagcagccgcaagaaa
cgcaaagaccaagaattttcagacatcgatggtctccacgactcactggaacgcactcct
cggcgaagagaccctccaacatggttgaaagaaaacccggagtatgaggtggaaggagac
atgctggagcttcttgtgaacaggagcaagaggaagaggaggaggcgagcggataaagca
ataaccggcacagagaaagtcaaaatcattaatatgatgaccggaaagaagttgggggca
gctttctgtccgatgctacaagagctgagggtgtacctggaggagaatcccgacgctgct
gtttcaccagagtggtccgaaacagttaggaaatctggttttctgccagagtccttattc
aaccgtctcctggccgaacattctgagatccagaagaaaagccggcgtcatcaccatcac
caccaccaccaccatcatcatcactaccacactccagaacccgtctctgaagaccctaac
ctggatggcgtggaggaggaaaccctggtgtcagacggagcttacatgatggatgaggag
gatctggagacatcccataatttcctcagcggcccggactttgacgttaaaatggagggt
ggtgacagcctttctcaaggagactatgacagctcagatcaagaagcgctactggaggac
gtcatcatagcacagaaggactccgactcctcctccagctcggaggactga
DBGET
integrated database retrieval system
