Oryzias melastigma (Indian medaka): 112148455
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Entry
112148455 CDS
T07439
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112148455 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112148455 (ttc37)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
112148455 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_19
TPR_16
TPR_14
TPR_8
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_7
ARM_TT21_C
TPR_MalT
TPR_15
TPR-S
Motif
Other DBs
NCBI-GeneID:
112148455
NCBI-ProteinID:
XP_024131356
Ensembl:
ENSOMEG00000007478
LinkDB
All DBs
Position
LG9:complement(22112571..22126307)
Genome browser
AA seq
1571 aa
AA seq
DB search
MSSKEVKAALKSARDAIKNKEFKEALKHCKTVLKLEKNNYNAWVFIGLAACELEQTDQSL
TAYKKAIELDPEQLLAWQGLANLYEKTDQWDFKVELPNVYQKLVELYSSSDKNKCYDVIK
KLSDIYQSDGEQLKLAKVWQQLIQLKEEEGVEKSDLVKLLKEMIHILSESPNETEQDNET
QQHLIAAFEKAMTLVEPVPGEEHRKISADYLKFLSKLPCEEAKIKEACESVLSLYPIHSY
ALEVLCGHYLKTGNMDDNAVSCFSRLQDLAPNSGLSHLGLGTKALQEGRYNDAINDLSKG
LNQMSLSTGWCGLAEAQLKTHRYSDCAVSCSQGLKADACEDEKLSSKLLSLKLEALVRSG
EDSAADEALDTFLKIPEAERDPTMLAHKGRAYLTKGKIDRALQVSSELLDSNPDLAQGLA
LRALVYVAEGQQQLAEESLLKAVSQTPNTGEYYFLLGKLYWEMGPETRKDRSKAHTHFLK
AAKLDPHLGCAFRYLGHYYREVADDRGRAQGCYKKAFELNSDDNESGAASVDLSIEQGDM
DTALRILQSVTEKATPGSAKWAWMRRGLYYLKVEQHQQAIADLQAALRADPEDWVCWECL
GEAYLKRRSFTAALKAFSRAHQLQPSSIYSVYQAAAIKQTLGKFKEAAAEYLQITTKQDY
VPALKGLGECQLSLAKTLMEDCRDGGAIDLIEKAIQNLFRAVQLRPDLSCLWKLLGDAST
AVSVVSPNRAQVLVPNSLAGLDSSSQANRLNQVQMLKVGERCYARALKLMPEAPSLWYDL
GLNYYRQAVCQFALAEQNQNSPSQDLEKAQQCLKKSIMMDSGNHSYWNALGVISVNKGLE
NFALAQHCFIKSIQVEPNNVVAWTNLGALYLKRENIELAHEAFKIAQSLEPLYVNCWIGQ
ALIAEGVGSYDTMDLFRHTTELSSHTEGVKGYAYWVCSTMLDKSNRNTELYRYNIVQMNA
ISAAQVALSKYTERIQSDPDAFIMLGYLNEHLHLNRQALQAYQRAAELLQSTLSSEELAF
SLGNYGRALCNLGRLEEAVRAYNSTPLEDLSDLVGLALAYCRSGLFQESVTTYERALAVA
SNEKEKAYILTALALLQHRQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLA
AAALTELLKQDSTSGSVVEQQCLLTCSLLALQGNYIAVQREASRAVHRNPGNSSLWALLS
RVVPQFYPRKANGGAVAGYVACLASMTQGKRALLFSGLNQLASGKHSGEEKLKNALKTIQ
RAVLLCPDDPAAWAALMAACHTENTSCYLSGSAPCRQSLEHTLMSVVSMKVQNVEEIERP
LAQSLEGWVLQQAVTGLMMAGQLDQAEALCTQVLSVSPEHPAVMLSLRQVQCQRLLLSGP
EPVLPEVVLEELNKAVILNPTNLGAWHWLADVYRSQGLLVQAVMAYRQSLQLASQLGVHS
YQVASLLRLALLALGPCMVGIPGNDWKDLVMEATTEVLKLGSFPVAHLFQALLQFVTKMT
SRETRRLLERLVYTTSQDFPVTVAQVASWYLLRQLHAKNDQELIDVLLQHAKQKGDQRLL
RFHSLLTSSSS
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaaagaagtgaaagctgcactgaaaagtgccagagacgccataaaaaacaaa
gaattcaaagaggccttaaagcattgcaagactgttttgaaactcgaaaagaataattac
aatgcgtgggttttcatcggcctggcagcctgtgagctggagcaaacggatcagtccctg
actgcttataagaaagctatagaactggatccagagcagctgctggcctggcagggctta
gcaaacctttatgaaaagacagatcagtgggatttcaaagtggagctgcctaacgtgtac
cagaagcttgtagaactgtattcaagttcagataaaaacaaatgttatgatgtcattaaa
aagctgtccgatatttatcagtctgacggagaacaattaaagttggcaaaggtttggcag
cagctaattcagctaaaggaggaagaaggagtggagaagagcgacctggtgaagctgttg
aaagagatgatccatatcctctctgaaagtcctaatgagacagagcaggacaatgaaact
caacagcatttaattgcagcctttgagaaagccatgactctggttgaacctgtgccagga
gaggaacacaggaagatctcagctgattatcttaagtttctttccaagctgccatgtgaa
gaagccaaaataaaagaagcgtgtgagtcggtgctgtcactgtatcccatccacagctat
gcccttgaggtcctttgcggtcactacctcaaaacaggcaatatggatgacaatgcagtc
agttgtttctcaaggctccaggatttggcccctaacagcggcttaagtcacttgggtctg
gggactaaagcactccaagagggaaggtacaacgacgccataaatgatctatcaaaaggt
ctaaaccaaatgagcttatcaaccggatggtgtggcctggctgaggctcagctgaaaacc
cacagatactctgattgtgccgtgtcatgctcccagggtctgaaagcagatgcttgtgag
gacgaaaaactgagcagcaaacttctcagtctgaagctggaagctctagtgagaagtgga
gaagacagtgcagcagatgaggctttagacacatttttaaagattccggaggctgaaagg
gatccgacaatgttagcccataaaggacgtgcatacctcaccaaaggaaagattgacaga
gccctccaggtatcatcggagctgctggattccaatccagacctggctcagggattagct
ctgagagctcttgtatacgtagctgagggtcagcagcagctggcagaggaaagtttgcta
aaggctgtgagccaaactccaaacactggagaatattatttcctgcttggaaaactctac
tgggaaatggggccagagactcgcaaagacagaagcaaagcccacactcactttttaaag
gctgcaaaattagacccgcacctgggctgtgcctttcgctaccttggccattactaccgg
gaggtggccgatgaccgcggccgtgctcagggctgctataagaaggcctttgagttaaac
agtgatgataacgagtcaggagctgcttcagtggacctcagtattgagcaaggagacatg
gacactgccttaaggattcttcagtctgtgactgagaaagccactccaggttcagctaaa
tgggcctggatgaggcggggcctgtactacctgaaagtggaacagcatcagcaagctata
gctgatttgcaggcagctttaagagcagaccctgaagactgggtctgctgggagtgttta
ggtgaggcatatttgaagaggcggagcttcacggcagctctcaaggccttcagccgagct
catcagctgcagccgtcctccatctacagtgtctaccaggcagctgcgatcaaacagact
ctggggaagtttaaggaggctgctgcagagtatttgcaaatcacaaccaagcaggactat
gttccagctctaaaaggccttggtgagtgccagctgtctcttgcaaaaaccttaatggaa
gactgcagagatggtggagccatcgacctcatcgagaaagccattcaaaacctcttcagg
gctgtccaactgcggccagatctgtcttgcttgtggaagttactgggcgatgcttctact
gcagtcagcgttgtttctccaaaccgagcccaagttttggtgccaaactctctagcaggt
ttagactccagctcacaggctaacaggctaaaccaggttcagatgcttaaagttggtgag
aggtgttacgctcgtgctttaaagctaatgcctgaagctcccagcctttggtacgatctt
ggactcaactattaccgtcaggctgtttgccaatttgctctcgcagagcaaaaccagaac
tctccatctcaggacttggagaaagcccagcagtgtttgaaaaagtcaatcatgatggac
agtggaaaccatagctactggaatgcactgggagtgatttcagtgaacaaaggactggag
aattttgctttggctcagcattgtttcatcaagtccatccaagtggaaccaaataatgtt
gttgcttggacgaaccttggcgctctttatttgaagagggaaaacatagagcttgcacac
gaagcctttaagatcgctcagtccttagagccactatatgtcaactgctggattggacag
gcgctaatagcagaaggagtgggaagctacgacaccatggatcttttcaggcacaccact
gaactcagcagtcatacggagggagtgaagggttatgcctactgggtgtgctccaccatg
ctggataagagcaataggaacacagagctgtaccgctacaatattgtgcaaatgaatgcc
atctctgcagctcaggtggctctcagcaagtacacagagagaatccagtctgaccctgac
gcttttattatgctggggtaccttaatgagcatctgcatctgaacaggcaggccttacag
gcttatcagagagcggctgaattgcttcagtccacattgtcctcagaggaactggctttt
tctctgggcaattacggccgtgctttgtgcaacttaggtcgattggaggaagcagtgcgt
gcgtataattccactccactggaggatctcagcgacctggttgggcttgctttggcctac
tgcaggtcgggactcttccaggaaagcgtcacaacatatgagcgtgctttggctgtggct
tccaatgagaaagagaaggcttacatactgacagctctagctttactgcagcaccggcag
ggcaacctggactcagccaagactctgctgttcaaatgctcaatgttgaaggagccaatc
tcggagtctttgctgtgcttgtgcgccctgggactggtccacagtgatgctacgctagct
gctgctgccctgacggagctgctgaaacaggattccacctccggaagtgttgtggagcag
cagtgtctgctcacctgcagcctgctagccctgcagggcaattacattgcagtgcaaaga
gaggcctccagagctgtacacagaaatccaggaaactcgtctttgtgggccctcctgtcc
agagtggtaccacagttctaccctagaaaggcaaatggtggggctgttgctgggtatgtt
gcctgtcttgctagtatgactcaaggaaagagggcgctgttgttcagtggactgaaccag
ctggctagtggaaaacactctggagaggaaaagcttaagaatgcactgaagaccatacag
agagctgtgctgctctgtccagatgatccagcagcctgggcagcattaatggctgcatgt
cacacagaaaatacctcctgttatctttctggttctgccccttgcagacagtcactggaa
cacactctcatgtcagtggtttctatgaaagtgcaaaatgtggaggagattgagcgcccc
ttagctcagtctttggaaggctgggtactacaacaggctgtgacaggcctcatgatggcg
ggccagctggatcaagcagaggctctctgtacacaggttctgagcgtgtcccctgaacac
ccagcagtgatgctgtccctcagacaggtgcagtgtcagcggctgcttttgtccggtcct
gagcctgtgcttccagaggttgtgctggaggagcttaacaaagctgttatattgaacccc
actaaccttggagcatggcactggttggctgatgtgtatcgaagtcaggggctgctggtt
caggccgtgatggcttacaggcagagcctacagcttgcttcacagctcggtgtgcacagc
taccaggtagccagtctgctcagattagctctgctagctctaggaccctgtatggtgggt
atcccaggaaatgactggaaagacctggtgatggaagccaccacggaggttctgaaactg
gggtccttccctgtggcccaccttttccaggccctgctccagtttgtgaccaagatgact
tcaagggaaacaagacggttgctggagcgtctggtctataccacatctcaagacttccca
gtgacagtggcacaagtggctagttggtacctccttcgacagttgcatgccaaaaacgac
caggaactcattgatgtacttttgcaacatgccaaacaaaaaggcgaccagaggctgctg
cggtttcattcattactgacctcttcttcatcctga
DBGET
integrated database retrieval system
