Oryzias melastigma (Indian medaka): 112150409
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Entry
112150409 CDS
T07439
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112150409 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
112150409 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112150409 (lsm4)
03041 Spliceosome [BR:
oml03041
]
112150409 (lsm4)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112150409 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
112150409 (lsm4)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112150409 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
112150409
NCBI-ProteinID:
XP_024134497
Ensembl:
ENSOMEG00000003606
LinkDB
All DBs
Position
LG4:complement(13297668..13300145)
Genome browser
AA seq
144 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEDVVSKGRGRGGAQQNKQQGKGRGGPGRGVFGSRGRGMSG
PGRGQQQQMPDKKTSKQQGMKNQH
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttgtccttgttgaagacggcccagaaccatcctatgctggtggagctgaag
aatggagaaacctacaacggtcatctggttagctgcgacaactggatgaacatcaacttg
agagaagtcatctgcacgtccagggatggtgataagttttggaggatgccagagtgctac
atcagaggaagcaccatcaagtatctgcgaatcccagatgagattatcgacatggtgaag
gaggacgtggtttccaagggtcgtggacgtggaggtgcccagcagaataagcagcagggt
aaaggaagaggcggacctggcagaggtgtgtttggcagccgcggcagagggatgtccggt
cctggtcgaggccagcagcagcagatgcccgataaaaaaacaagcaaacagcagggaatg
aagaaccagcactga
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integrated database retrieval system
