Oryzias melastigma (Indian medaka): 112151992
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Entry
112151992 CDS
T07439
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112151992 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112151992 (cnot10)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112151992 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
TPR_8
ANAPC3
TPR_7
TPR_11
ARM_TT21_2nd
TPR_MalT
TetR_C_5
Motif
Other DBs
NCBI-GeneID:
112151992
NCBI-ProteinID:
XP_024136956
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Position
LG16:complement(18907746..18924120)
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AA seq
748 aa
AA seq
DB search
MKTREMAENSAEHSDDKHDSSGVTGMSDQEKELASSAYDCFLAGRYEESMKHLEALQEFN
KEDYKIALNKAVTEFYRSSQTTTGTLRQTLMAMKNRLHSSLTEDADGLDDVENSLLYYNQ
AVICYHLKQYSEAISIGEKLYQFLEPFEEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLD
KLSAQGSSRNGKGESAGSHKDAGSQRAEFAAMIEAAKSKLHQYKVRAYIQMKSSKACKRE
IKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSCNIAEHPGPMKTGECVRCMFWNN
LGCIHFAMGKHNLGIFYFKKALQENDHTCAQLGDGSSSQAKSFTGMPMCALLANKRYELL
YNCGIQLLHIGRPLAAFECLMEAVQVYHSNARLWLRLAECCISANKGGSEQESKGLPCKK
GIVQSVIGQGYHRKIVLASQSAQNTAYSEGQSAAIPVASMEFAAICLRNALLLLPEQHQQ
DATTESSSRSSSQSGGAESGCENSDTCSIKGQETDKFMSAAPSSPLRKQEVENLRCSILA
CSAYVALALGDNLMALNHAEKLLHQNKLSGSLKFLGRIYAAEALISLDRISDAISHLNPE
NVSDVSVGVVSSDPDQGAERGEEPVEPSGKKTPLCYPSSVAAARSIMLFNLGSAYCLRSE
YDKARKCLNQAVSITNGKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPMAVHRTSP
DSRRKATPSLQSFQPLQLPSSFSQVQRK
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgaagacccgggaaatggcagaaaactccgcagaacacagcgacgacaagcatgacagc
tccggcgtgactgggatgagcgaccaggagaaggagctggcctccagcgcgtacgactgc
ttcttggctggaaggtacgaagagtctatgaagcacctggaagccctgcaggagttcaac
aaagaggactataagatcgccttgaacaaggccgttactgagttctacaggagcagtcag
accaccacaggcaccttaaggcagaccctgatggccatgaagaaccggctccactcatcg
ctgactgaggatgccgacggcctggacgacgtggagaacagcctgctgtactacaatcaa
gcggtcatctgttaccacctgaagcagtactctgaggccatttccattggggagaagctc
taccagtttttggagccgtttgaagagaagtttgctcaggccgtctgcttcctgctggtg
gacttgtacctgctgaccttccagccggagaaggcactgcacctgctggcggtgctggat
aagctgtctgctcagggcagcagcaggaacgggaaaggagagagcgccggttcacataaa
gatgctggcagtcagagggcggagtttgcagccatgattgaagcggccaaatccaaactg
caccagtacaaggtcagagcctacatccagatgaagtcttccaaggcctgtaagagagaa
atcaagtctgtgatgaacacagcaggaaattctgcaccctcactcttcctaaagagcaac
ttcgagtatctgagaggaaactaccgcaaagccgtgaagctgctgaacagctgcaacatc
gctgagcatccaggacccatgaagacaggtgaatgtgttcgctgtatgttctggaacaac
ctgggctgcattcactttgcaatggggaagcacaatctgggcatcttttacttcaagaaa
gctctgcaggagaacgaccacacgtgtgctcagctgggagacggcagcagcagccaggcg
aagagcttcacaggaatgcccatgtgcgccctgctggccaacaagcgctacgagctgctg
tacaactgtggcatccagctgctgcacatcggcaggccgctggccgccttcgagtgtctg
atggaggccgtgcaggtctaccactccaacgcccggctgtggctgcgcttggctgagtgc
tgcatctctgccaacaaagggggctctgaacaggaaagcaaaggcttaccttgtaagaaa
ggaatagttcagtctgtgatcgggcagggataccaccgcaagatcgtgctggcctcgcag
tctgcacagaacactgcttacagtgagggtcagtcagcagccattccagtggccagcatg
gagtttgctgccatctgcctgaggaacgctctgctgctgctgccggaacaacaccaacaa
gacgccacgacggagagcagctccaggagctccagccaatcaggaggcgcggagagcggc
tgtgagaacagcgacacctgcagcattaagggtcaggagacagacaagttcatgtctgcg
gctccatcgtctcctctcaggaagcaggaggtggagaacttgcgatgctccatactggcc
tgcagtgcctacgtggccctggctctaggagacaacctgatggctctaaaccacgctgag
aagctgctgcaccagaacaaactgtctggatccctcaagtttctgggtcgcatctacgcc
gctgaagccctcatctcactggaccgaatctcagacgccatcagccaccttaacccggag
aacgtgagcgacgtgtcggtgggtgtcgtgagcagcgatccggaccagggtgcagagagg
ggagaagagccagtcgagccctcagggaagaagacgcccctgtgttaccccagcagtgtg
gcggcggctcgctccatcatgcttttcaacctgggcagtgcctactgcttgaggagcgaa
tatgacaaggcccgcaagtgtctgaaccaggctgtgtccatcacaaacgggaaggagatc
ccccccgaagccatcctgctgggcgtgtacctggagcttcagaacggaaacacccagctg
gccctgcagatcatcaagcggaaccagcttctgcccatggcggtccacaggacctctcca
gactcgcgcaggaaagccacgccgtcgctgcagtccttccagcccctccagctgccatcc
tccttctcacaggttcagcgtaaatga
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