Oryzias melastigma (Indian medaka): 112152180
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Entry
112152180 CDS
T07439
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112152180 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112152180 (cnot1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112152180 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112152180 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
112152180
NCBI-ProteinID:
XP_024137334
Ensembl:
ENSOMEG00000015124
LinkDB
All DBs
Position
LG6:complement(27570979..27594455)
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAVDNPLHYQKSLKPSVHLFAQLSKVLK
LSKVQEVIFGLALLSSSNTDLRGFSAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPTDRIF
PDSGELAKTMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTH
SGLTDGIPLQSISAPGSGIWSDGKDKTDSSQPHTWNVEVLIDIVKEVDPTLNFKQVTYEL
DHPGFTIRDSKGLQIVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFCF
ADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFNFPIKHCP
DMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHS
MADWYMRGEQYDQAKLSRILDVAQDLKVRLDSLSMLLNGTPFAFVIDLAALASRREYLKL
DKWLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQT
CAGNVTQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVDPLTGM
GSLNLGGTATSHTPSIQGFPGSLGSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSLTSQLP
GMDSGPLGSGIGSGIGSSLGMSTVSTDPFSNRKIGTPGLNPPTFQQTDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSMAL
AQVQAQSQQSAGLKAPQPGQASTLVTTTTTTTTVAKTTTITRPTTSSFKKDMPPSINTTN
IDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYL
VMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKN
LGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRP
QNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKMLEE
QLSAPKKESKPPEEMLPVSTSAPPSAPAATTTTCTTTGPPTPQFSYHDIHVYSLSGLAPH
INVNVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSE
ESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAA
RVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERM
PEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIY
DKLIADMEQLLHAIPPALTINPLTQALRSLLESVALARNSRDGIAALGLLQKAVEGLLDA
TSGADADLLIRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLI
RNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFQTIETLM
RTCAHSRANAPEGLPQLMDVVRSNYEAMMERAHGGPNFMMHSGISQASEYDDPPGLREKA
EYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactatcgagccagccagcaagaaatacagcatattgtaaatcgtcacgga
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggaaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagcccaactttatctctaccttgtgttacgccgttgacaatcctctgcat
taccaaaagagtttaaaaccgtcagtccacctcttcgctcaactcagtaaagttctgaag
ctcagcaaggtccaggaggtgatatttggccttgctttgcttagttccagcaacacagac
cttcgaggtttctctgcacagttcatcaagcagaaactcccggacctcctgcgctcatac
gtcgacgcagatcttggtggaaaccaagaaggtggcttccaggatattccaatagaggtg
ttgcacctgctgctctcccatctcctgtttggtcagaagggagccagtggggtagggcag
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgcccc
gtggtgctcgcaccacttctgtaccctgaaaaacgggacattcctacggacaggatcttt
ccagactcgggggagttggccaagaccatggagagttctcttgctgacttcattcaggaa
gtgggctacggcttctgcgctagtctggatgaatgcaggaacataatcctccagtatggg
gtgagagaggtgactgccagccaggtagccagagtcttggggatgatggctcgaactcac
tctggccttaccgatggcatcccgctgcagtcgatttctgctccaggaagtggcatatgg
agtgatgggaaggataagactgacagctcgcagccgcatacgtggaacgtggaagttctc
attgatatcgttaaagaagtggatcccaccctgaacttcaaacaagtgacatatgaactg
gaccacccaggctttacaattcgtgacagtaaaggcctccagatagtggtgtatggtatc
cagagggggctggggttggaggtcttccctgttgatctcatctatcgcccgtggaaacac
gcagaaggacagttgtcctttattcagcactccctgatgaacccagacgtgttctgcttt
gcggattacccctgtcacactgtcgccatcgacatcctgaaagccccgcctgaggacgac
aacagggagattgcaacatggaaaagtctggacctggtagagagccttctccgcctctcg
gaggtcggacagtacgagcaggtgaagcagctcttcaactttcccatcaagcactgccca
gacatgctggtgctggcactactgcagatctccacctcctggcacacgctacgtcatgag
ctcatctccaccctgatgcccatctttctgggcaatcaccccaactccgctattatcctg
cattatgcctggcatggacagggacagtctccctccattcgtcagctcatcatgcactct
atggctgattggtacatgaggggggagcagtacgaccaggccaagctctcccgcatccta
gacgtggcccaggacctaaaggttagactcgattctttatccatgctgctgaatggtact
ccatttgcctttgttattgacctcgctgcacttgcctctcgccgtgaatacctcaaactt
gataagtggctgactgacaaaatcagagagcatggggaacctttcatccaggcgtgtgtg
acattcctgaagaggcgctgtccatccatcatggggggtctggctcccgacaaagatcag
cccaaaagtgcccagctcccccctgagactttggccaccatgcttgcctgcttacagacc
tgcgctgggaatgtgacccaggagttgtcagaaactatccttactatggttgccaactgc
agcaacgtaatgaataaagctcgacagccaccaccgggggtaatgccaaagggacgcgcc
ccgagcaccagcagcctcgatgcaatctcaccggtgcaggtggaccctctgactggaatg
ggctccttgaacctgggtggcacagccacctcccacactccgagcatacagggctttcca
ggctctctgggttcagctttcagtaatccccagtcccctgctaaagcctttccccctctc
accaaccccaaccccagtacaccatttgggggtattggcagtctgacctcgcagcttcct
ggaatggactccggtcctctgggctccggcatcggctccggcattggctccagcctcgga
atgtcgacagtaagcactgaccctttcagcaacaggaagataggcacaccagggctgaac
ccgccgacctttcagcagactgacctttctcaggtgtggcccgaagcaaaccagcacttt
agtaaggagatagacgacgaagcaaacagttatttccaacgaatctacaaccacccgcct
caccccaccatgtctgttgatgaagtgttggagatgcttcagaggttcaaggactccacc
atcaagcgggagcgggaggtgttcaactgcatgcttcggaacttgtttgaggagtaccgg
ttcttccctcagtaccccgacaaggagctgcacatcactgcctgtctgtttgggggcatc
attgagaagggtctggtcacatacatggctctgggtctggctctgcgatacgtccttgaa
gccttacggaaaccgtacggatccaaaatgtattactttggaattgcagctttggaccgg
ttcaaaaacagacttaaggattaccctcagtattgtcaacatttggcctcaattgctcac
ttcttgcagtttccacatcatctacaagagtgcgtgcagtatatcgagtatggccagcag
tcacgggaccccccggtgaagatgcagggctccatcaccactcccggcagcatggctctc
gcacaagttcaagcccagtcgcagcagtctgccggcctcaaagcaccacagccgggccag
gctagcactctggttaccacgacgacaactaccaccacagtagctaaaaccaccaccatc
acaagaccaacaaccagcagcttcaagaaggacatgcctccttccataaacactaccaac
atcgacacgctgctggtggccacggaccagaccgaaaggattgtagaacccccagagaac
gttcaggagaagattgctttcatcttcaataacctttctcagtccaacatgacacaaaag
gtggaggagctgaaggagacggtgaaggaggagttcatgccctgggtgtctcagtacctg
gtgatgaaacgagtcagcatcgagcccaacttccacagcctctactccaactttttagac
acactgaagaacccggagtttgtgaagatggttctcaatgaaacttacaggaacatcaag
gtgcttctgacatctgacaaggcagctgctaatttctctgatcgctccctgctgaagaac
ctgggtcactggttgggcatgatcactctggccaaaaacaagcctattctttatacagat
ctggagctcaaatctctgttactggaagcttatgtgaaaggccagcaggagctgctctat
gtggttccttttgtggccaaagttttggagtcaagtcttcgtagcatggtcttcaggcct
cagaatccgtggaccatggccatcatgaatgtccttgctgagctccatcaagaacatgac
ctcaagctgaatttgaagtttgagattgaagttctctgtaagaacttgtctctggacatc
aatgacctgaagcctggaaatctgctgaaagacaaagagaagctgaagatgctggaagag
cagctgtctgcgccaaagaaggagtccaaacctccagaggaaatgctgcccgtttcaacc
tcagctcctccctccgccccagctgcaaccaccaccacgtgcacaacaacagggcctccc
accccacagttcagctaccatgacatccacgtctactccctttctggcctggctcctcac
attaacgtaaatgtaaacatccctctgctgcaggcgcacccgcagctgaagcaatgcgtg
agacagtctgtggagcgagcggtccaggagctggtgcaccctgtggtggatcgctccatc
aaaatcgccatgacgacctgcgagcagatcatcaggaaggactttgccctggattcagag
gagtcccgcatgcgtgtggccgcccaccacatgatgaggaaccttacagcaggcatggcc
atgatcacctgccgcgagccgctgctcatgagcatcgccaccaacctgaaaaacagcttt
gctgctgcgcttcgggctccaaccccccagcagagagagatgatggaggaagctgcagcc
agagttgctcaagacaactgtgaactggcgtgctgcttcattcagaagacggctgtggag
aaggctggcccagagatggacaaaagactggccacggagtttgagctcaggaagcacgct
cgccaggagggacggcgctactgtgatccggttgtcctgacctaccaggctgagcggatg
ccggaacagatcaggctgaaggtgggaggagtcgaccccaagcagctggccgtttatgag
gagtttgccagaaacatcccgggtttcttgccgagcaacgacctttcacagcccacaggc
ttcctggctcaacccatgaagcagcaggcatgggccaccgatgacgtggctcagatctat
gacaagctaatcgcagacatggagcagcttcttcacgccatccctccagccctcaccata
aaccctctgactcaggctctgcgcagcctgctggagtctgtggccttggccaggaactcc
agggatggcatcgctgctcttgggctgctgcagaaggctgtggaaggactcctagacgct
acaagcggtgctgatgcagatttgctgattcgctacagagagtgtcacttgctggtgctg
aaagccctgcaggacggacgagcttacggaccgcagtggtgcaataaacagatcacaagg
tgtctgattgaatgtcgtgatgaatacaaatacaacgtggaggctgttgagcttctgatc
aggaaccatttagtgaatatgcagcagtacgacgtgcatctggcgcagtcgatggagaat
ggattgcactacatggccgttgctttcgccatgcagttagtgaagctgctgctggtggac
gagcgcagcgtcagccacgtcaccgaggcggacctgttccagaccatcgagactctaatg
aggacctgtgctcactctagagccaacgctcccgagggtcttccccaactgatggatgta
gtccgctcaaactatgaagccatgatggaacgtgcccacggcggccccaacttcatgatg
cactctgggatctcgcaggcgtctgagtatgacgatcctccggggctgcgggagaaggct
gagtacctcctgagggaatgggtcaacctgtatcactcagctgctgcaggcagggacagc
accaaagcgttctccgccttcgtgggccagatgcatcagcaaggcatcttgaagacggat
gacctgatcaccagattcttccggctgtgcacagagatgtgtgtggagatcagctaccgc
gctcaggctgagcagcagcacaacccggcggccagcgcagccatcatcagagccaagtgt
taccacaacctggacgcctttgtgcggctcatcgctctcctggtcaaacactctggagag
gccaccaacaccgtcaccaagatcaacctcctcaacaaggtgctggggatcgttgtcggc
gtcctcatccaggaccacgacgtccgtcagacggagttccaacagcttccataccatcgc
attttcatcatgctgctgctggagctcaacgccccagaacacgtcctggagaccatcaac
ttccagaccctcactgccttttgcaatacgtttcacattctgagacccaccaaagcgcct
ggcttcgtgtacgcctggctggagctcatctcccaccgcatcttcatcgccaggatgctc
gcacacacaccgcagcagaagggctggcccatgtatgcacagctgctcatcgatctcttc
aagtaccttgcccctttcctgaggaatgtagagctcaacaaacctatgcaaattctctac
aagggcacactgcgagtcctcctggtcctgctgcacgacttcccagagttcctgtgtgat
taccattacggcttctgtgacgtcatcccacccaactgcatccagctccgcaacctcatc
ctcagtgccttcccacgcaacatgaggctccctgaccccttcacccccaacctgaaggtg
gacatgctgagtgagatcaacatcgctccccgaatcctcaccaacttcacgggcgtgatg
ccgtctcagttcaagaaggatctggactcgtacctgaagacgcgctctccggtcaccttc
ctgtccgagctgcgcagcaacctgcaggtgtcaaacgagccgggaaaccgctacaacatc
cagctgatcaacgcgttggtgttgtatgtgggcacacaggccatcgctcacattcacaac
aagggcagcaccccctccatgagcaccatcacccactctgcacacatggacatcttccag
aacctggctgtggacctggacactgaggggcgatacttgtttttgaacgcaatcgccaat
cagctgcgctacccaaacagccacacccactacttcagctgcaccatgctctacctgttc
gctgaggccaatactgaggccatccaggagcagatcaccagggttctgttggagaggctg
atcgtgaacaggcctcatccttgggggctcctcatcaccttcatcgagctcatcaagaac
cctgcctttaagttctggagtcacgactttgtgcactgtgcccctgagatcgagaagctg
ttccagtccgtcgctcagtgctgcatggggcagaaacaggcccagcaggtgatggaggga
accggcgccagctag
DBGET
integrated database retrieval system
