Oryzias melastigma (Indian medaka): 112155062
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Entry
112155062 CDS
T07439
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04510
Focal adhesion
oml04512
ECM-receptor interaction
oml04518
Integrin signaling
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112155062
04518 Integrin signaling
112155062
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112155062
09142 Cell motility
04820 Cytoskeleton in muscle cells
112155062
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112155062
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112155062
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112155062
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112155062
Hyaluronan
Extracellular matrix or blood plasma proteins
112155062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
112155062
NCBI-ProteinID:
XP_024142214
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All DBs
Position
LG21:complement(16801429..16817234)
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AA seq
1041 aa
AA seq
DB search
MAMISGFVLLCMIHASVPQPAPPRGARPVPGRGDSPDPTPPPLPPEPTPPSECCEKNINC
PIKLFFTIDTSETIALQQSPPGSLVESIKDFTRMFAQQLADEDYRGQIQITWSIGGLHFS
QTQVTFSDITTRENFIRNLIRIKYLGKGTYIDCALKNMTYQMTQSSTSKDSVLFAVVITD
GHVTGSPCGGIKMMADKARDQGIHVFSVAASRSIDEIGMREIAGSPTELFRDDYIVMEIV
DGRAKLSTKSIDRIIKVMKHQAYLQCYKPTCFEAPGSPGRKGPKGLKGAKGVRGQTGPKG
RKGSQGDPGIEGQIGRPGPKGEVGFKGDKGEVGVGGAKGVAGVPGKSGVDGQKGKIGRIG
PPGCKGDPGNKGPEGYQGEVGETGLQGSDGEKGSPGLPGKPGPRGPDGEQGPKGEIGMPG
NPGVPGNKGPKGQKGNPGAKGDLGRRGDRGPPGTKGVEGKKGEKGEQGPEGERGRPGEDG
FKGSKGDQGLPGPRGPPGETGVPGKNGVLGDPGEPGPRGNPGQRGLQGDKGRPGFNYPGP
RGPPGERGEPGRTGPRGSRGECGAKGEAGNKGPPGEPGEPGQLGEPGQRGPRGDPGADGG
PGPTGDPGLTECDVMTYIRETCGCCDCEKHCGALDIVFIIDSSESVGLTNFTLEKNFVIN
TINRLGSMAPDPTSPTGTTVGVVQYSHNGTFETIRLDDANINSMSAFKAAVKNLQWIAGG
TFTPSALKFAYDNLIRDSKRARAQVSVIVVTDGRFDPRDDDTQLRYLCDDPNVVVNAIGV
GDMFDKSHDSETLLSIACNDKNRITEMKRYTDLVAENFIEKMETVLCPDPVIKCPDLPCK
AEQYVAPCVGRPVDLVFLLDGSERLGMDNFQHIREFVQKVADRLVLAKNKNDQMWSRLAL
IEFGKENELRVAFNLTHNRDVVAAGITTLPYLDSSSAVGTAITYTIDHILGKGRSRKTRR
GAEISFVFITDGITDSSSLDEAVSAMRREQIISTVIATGSDVDNDILHKLVMNDQEAIFK
GEKLSDMLQPSLFDRFIQWVC
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgatttcagggtttgtcctcctgtgcatgattcacgccagcgtacctcaacct
gcaccacctcgtggggccagaccggttcctggacggggtgacagtccagacccaacacct
cccccactcccacctgagccgacacctccatctgaatgttgtgagaaaaacatcaactgt
cccataaagctgttcttcaccattgacacctcggagaccattgccctgcagcaatccccg
cctggtagcttagtggaaagcatcaaggatttcactcggatgtttgcccaacaacttgcg
gatgaggattacaggggccagattcagatcacctggtccatcggaggcctgcatttctct
caaacacaggtcacctttagtgacatcacaaccagagagaactttatccggaatctcatt
cggatcaaatatcttggcaaaggcacctacatcgattgtgccctcaaaaacatgacgtac
cagatgacccagtcttccacgagtaaagactcagtcctcttcgctgtggtgataaccgat
ggtcacgtgacggggagtccgtgtggggggatcaaaatgatggcagacaaggcgagagat
caggggatccacgtcttctcagtggcagcatccaggagcattgatgagatcggcatgagg
gagatagccggatctcccaccgaactgttccgggacgattacatagttatggagatcgtc
gatggaagggcaaaactgagcaccaaatcgattgatcgtatcatcaaagtcatgaaacac
caagcttatctacagtgttacaaacccacatgctttgaggctcctggaagcccgggacga
aaagggcctaaaggtctaaaaggcgcaaaaggagtcagaggccagacaggtccaaagggt
agaaaaggttcacagggtgatcctggaattgagggtcagattggacgacctggtccaaag
ggggaagttgggttcaaaggcgataagggggaagttggtgtaggtggagcaaagggtgtg
gcaggagtgccaggcaaaagcggagttgatggacaaaagggtaaaattggcagaattgga
cctcctggctgcaaaggagatccaggaaataaggggccagaaggctaccaaggagaagtc
ggtgagactggtctgcaaggatccgatggggaaaagggcagtcctggtttgcctggcaag
ccgggcccccggggccctgatggtgaacaagggccaaagggagaaattggaatgcctggg
aatcctggagttccaggaaataagggtccaaagggacaaaaaggcaatccaggagcaaaa
ggcgatttgggccggagaggagatcgtggacctcctgggaccaaaggagttgaagggaaa
aagggggaaaagggagaacaagggccagagggagaaagaggtcgacctggggaagatgga
tttaagggttctaagggggaccaggggcttcctggaccaagaggtccaccaggagagaca
ggggttccaggaaaaaatggtgttttgggagatcctggagaacctggaccaaggggaaac
cctgggcaacgtggccttcagggggacaaaggaagaccaggattcaactatccaggacca
agaggacctcctggagaaagaggtgaaccgggcagaacaggacccagagggagcagaggt
gaatgtggggccaaaggagaagctggaaataaaggaccaccaggagagcctggggaaccg
ggacagcttggagagccagggcagagaggacccaggggagacccgggagcagatggcggt
ccaggaccaacaggcgatcctggactcactgaatgtgatgtgatgacgtacatcagagag
acgtgtggatgttgtgactgtgaaaagcattgtggagctctagacattgttttcatcatt
gacagctcagaaagtgttggactgacaaacttcaccttggaaaaaaattttgtcatcaac
accatcaacagacttggatctatggcccctgaccccacatccccaactggtacaacagtt
ggagtcgttcagtacagtcacaatgggacctttgagaccatccgtcttgatgacgccaac
ataaactccatgtctgcctttaaagctgcggtgaagaatctacagtggatcgctggaggc
acctttaccccctctgctctcaagtttgcctatgataaccttattagggacagcaagaga
gcccgcgcacaagtttctgtcatcgtggtcacagacgggcgctttgaccctcgggatgac
gacactcagctcaggtacctttgcgacgaccccaatgtcgtagtcaatgccattggagtt
ggtgacatgtttgacaagagccatgatagtgagaccctgctctcaatagcatgcaatgac
aagaatagaatcacggagatgaagcggtacactgatctggtggctgagaactttatagag
aaaatggagacagtgctctgccctgatccagtgattaaatgcccagaccttccctgtaaa
gctgaacaatatgtggctccctgtgttggtcggccggtggatttggtgtttttgctggat
ggatcggagcgccttggaatggacaactttcagcacattcgggaatttgtgcagaaagtg
gccgaccgcctggttctggccaagaacaagaatgaccagatgtggtcccgcctggctctg
atcgagtttggaaaagagaatgagctccgcgtggctttcaacctcacacacaaccgtgac
gtcgttgccgcaggcataaccaccttgccctatctcgactcctcgtcagcagtggggacc
gcaatcacctacaccattgaccacatcttggggaaaggacgcagtcgcaagacaagacgt
ggtgctgagatatcatttgttttcattacagacggcatcactgacagtagtagcctggat
gaggcggttagtgcaatgcgaagggaacaaatcatctccaccgttattgccacgggaagt
gacgttgacaacgacatcttgcataagttagtaatgaacgatcaggaggccatttttaag
ggagaaaagctttctgatatgctacaaccaagtttgtttgaccgtttcatccagtgggtt
tgttaa
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integrated database retrieval system
