Oryzias melastigma (Indian medaka): 112155792
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Entry
112155792 CDS
T07439
Name
(RefSeq) zinc finger BED domain-containing protein 4
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112155792
04121 Ubiquitin system [BR:
oml04121
]
112155792
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
112155792
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
112155792
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
zf-C2H2_12
DBD_Tnp_Hermes
Motif
Other DBs
NCBI-GeneID:
112155792
NCBI-ProteinID:
XP_024143499
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Position
LG18:complement(1036366..1041508)
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AA seq
632 aa
AA seq
DB search
MEPGPRGLTHFHKTHILRDFIAEELNLAARDIIEEMERTMAGYEERTSGLKQEIEEQRRQ
LEYLHPESSTDHSRKRPRSQMWEHFELISPNRLQCLLCPQQLSYNNNTSSMMRHFKAKHD
GILEPDYDKKQELDQALVNLVVKDSQPCSIVEDRGFRDFVKKLDPSYALPSKQALKKMVD
DRYQEEKAEAQAQLRGAEGVSLTVDLWTSVDARLAVACHYVLDNSKLATVLLGVLPFPQN
HSSAEVADAQRTLMAEWGLEGKVKCLVSDATPSMMAAADDLAVPHVECIAHALNSVVQRA
LDKTAGLKVLRRRAGEVVAVFRSSAAAKEKLRIKQLKLALPATKLVREESSRWTSTFLML
QSLLDARRAIGSALTALGAKVEPLSCDESETAAACLQVLKPFYTATVEMSEQKRVLGSMG
IPLIKMLLLATEEVAEDSDNVTAELLGQNLSMGLRREFDGLEDNPVLSLATLLDPRFKTI
GFRCQEKAQHAVQTLTAECAALVRPTADRSTERPARATSTGKNPAFNLWKSLDDQATMVR
THSNATADATLEVQRYMTDPPLERSEDPLVYWNEHKNIYPHLFSLAKKHLCIPASSVPFE
RVFSKAGEVFSRKRNRLSPKAAEKILLLNKDI
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggagccgggcccccgcggactcacgcacttccacaagacgcacatcctgcgggacttc
atcgcggaggagctgaacctggccgcgcgggacatcatcgaggagatggagaggaccatg
gcgggctacgaggagaggacctccgggctgaagcaggagatcgaggagcagaggaggcag
ctggagtacctgcaccccgagagctccacggaccacagcaggaagaggcctcgttctcag
atgtgggagcacttcgagctgatcagtccaaacaggctgcagtgtctgctgtgtcctcag
cagttgtcttataacaacaacacctcgtccatgatgaggcacttcaaagccaagcatgac
ggcatcctagaaccagattacgacaagaagcaggagctggaccaggctctggtcaacctg
gtggtgaaggactcccagccgtgctccatcgtggaggatcggggcttcagggactttgtg
aagaagctggacccgtcctacgcgctaccgagcaaacaggccctgaagaagatggtggac
gaccgctatcaggaggagaaggccgaggcgcaggcgcagctgcggggggcggagggcgtc
agcctgacggtggacctgtggacgtccgtggacgcgcgcctggcggtggcctgtcactac
gtgctggataactccaagctggccacggtgctgctgggggttctgccgttccctcagaac
cacagttccgcggaggtggcggacgctcagaggaccctgatggcggagtgggggctggag
gggaaggtgaagtgcctcgtgagcgacgccacgccgagcatgatggccgccgcggacgac
ttggccgtaccgcatgtggagtgcatcgcccacgccctgaacagcgtggttcagagggct
ctggataaaacagcgggtctgaaagttctgcgccggcgggcgggcgaggtggtggcggtc
ttccggtccagcgccgcagcgaaggagaagctgaggatcaagcagctgaagctggctctc
cccgccaccaagctggtgcgggaggagagctcacgctggaccagcaccttcctgatgctg
cagagcctgcttgatgcgcggcgggccataggctccgccctcaccgccctcggggccaag
gtggagcctctgtcctgcgacgagagcgaaacggcggcggcctgtctgcaggtgctgaag
ccgttttacacggcgaccgtggagatgtcggagcagaagcgggtgctggggtccatgggg
atcccgctgatcaagatgctgctcctcgccacggaggaggtggcggaagactcggacaat
gtgacggcggagctgctgggccagaacttgtccatgggcctcaggagggagttcgacggc
ctggaggacaaccccgtcctgtccctggccacgctgctcgacccccggttcaaaaccatc
ggcttccgctgccaagagaaggcccagcatgccgtgcaaaccctgaccgccgagtgtgcg
gcgctggtgaggcccacggcggacagatccacagagcgaccagctcgagcgacctccacg
ggtaagaacccagctttcaacctctggaagagtctggacgaccaggccaccatggtgaga
acccacagcaacgccacagcggacgccacgctggaggtccagcgctacatgacggatcct
cccttggagcggtcagaagatcctctggtctactggaacgaacacaaaaacatttacccg
cacctgttctccctggccaagaagcacctgtgcatccccgcctcctccgtgcccttcgag
cgcgtcttctccaaagctggagaggttttcagccggaaacggaaccggctcagtccaaag
gcagcagagaaaatactgcttcttaacaaggacatctga
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