Oryzias melastigma (Indian medaka): 112156507
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Entry
112156507 CDS
T07439
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112156507
Membrane trafficking [BR:
oml04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112156507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_2
TPR_1
SH3_9
SH3_1
Med28
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
112156507
NCBI-ProteinID:
XP_024144590
Ensembl:
ENSOMEG00000022343
UniProt:
A0A3B3DZ67
LinkDB
All DBs
Position
LG18:complement(20429112..20447491)
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AA seq
1309 aa
AA seq
DB search
MSTRWYRDPSGDRNRREESMDGQAGRRRQSGTGNRTFTARAFSKDSLKRSLSAGEDNFPT
VLPVLLDVVRGPDRLAADEESQELLREKLRLLEADCAGVNSLFVELSAQLVSINSEEKSI
CVTFKTFKEIWKFTTYYTTGLLGHCLEDLLLDEKVWLSSLEEDVAIEVSIQEETLNLLYK
GILMQEGSLFGSCSVSQMFDSSTSGADLYLEQGDIAQFEPPFLGSGWTVLCLADGARGTA
PKPALEPVIPFHQWFLKSCGESILVGDGKPACDFPLQFARGKCVATQMHDAECPDELSVA
PGDVIIIMGLLVSCFDWFTGKKEATGEVGLVKTSFVEVSSETSDSEDVFLDSKEWMFNTQ
KEEEIIKESIDELKRKSLNDVGQNYKLDTIHYQDSENKTRSPDTKPSPKKLRKYIRRILA
PEKYSSLASSVIENEVLEDTKQTARLPCFTVLPVVDGENFIENFSPFFSFLDGQDFKEEF
AVLYGLSSENLSSTFFEGHADDDELISFLGVARETARKRRLYWMQTRLCFLLGKFCAGKL
KFSQARVYFEESLGIPRETFTDLRLLASIYSNLATIYLLQKNRDSFFGVAERLSAFLLGV
PDCLKSLEDNMVLKYMLKKAVLAHNRRAEARACYLLAKHHWIKGEGNQVIPYLERLLVVW
DEAQRKEDVSPSHGYLVLGELYRKFHLLHLSTSSARRASLQPSASLSDRLGSMMLVLTTD
GEASVPPRLAPYLYRSLAFIEVQEEEGAGLHHRALSHQLTLSLCQLFYKYKMIDHAIHRM
HSLIKSKWSSKEVSVSDRNSALIWLAWLHIENHQPSIALDILNLFLASTSEDCKSPQQGV
VLNMRGVALRCMGDHRSAAESYQAAVDVCREYEDMPNWAVAQANLGLLFLKAGAKGLAQR
KLTEALQLFSELSEENHEANFIAVLLELGQHYVEQRQVEFGKGCYEWALLLAMKAKLADY
QLRATRHLCHLYEHESPDQTQCIIYNRHLIQLLRCSGNRAEEGNALEAISQLYLALGTDR
AYRAALDYTKSSLMIFIDLGWKEKEAYGWLKAGKIHHLLGQTELVDIYVQAAQDVALSTG
DTGFILNLLEAAGDIFWDSCQDYEKAVTFYRDRALPIAVKISSTQSRLRLSNKLTEVMLA
LKSYSEAAEFAHTAVDISASAGLRLNERVAYHRLAFVYQHLEQSELAEHYYLKALALCPS
PLQFDEETLYYVRVYQTLGDIIFYHLKDPFDAAGYYHLALAAAMDLGNKRSQLQLCTRLA
TIYHNFLIDRERSLFFYQKARSFATELNVKRINISADRQHVSMFQHSTQ
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccaggtggtaccgagacccgagcggggatcggaaccggagagaggagtccatg
gacgggcaggcggggcggcgcaggcagagcggcaccggaaaccgaaccttcacggctcga
gctttttccaaagattcactgaagaggagtctgtcagcaggcgaggacaatttcccaaca
gttctgcccgtcctgctggatgtggtccgaggtccggaccgtctggctgcagatgaggag
tcacaggaactgcttagagagaaactgcgcctcctggaggcggactgtgccggagtcaac
agcctgtttgtggaactgtcagctcaactggtctcaatcaacagtgaagaaaaatccatt
tgtgtgacattcaaaacattcaaggaaatatggaaattcaccacatattacaccacaggt
ctcctgggtcactgtttggaggatttgttgttggatgaaaaagtctggctcagttctttg
gaggaggatgttgctattgaggtttctattcaagaggaaactcttaatctcctctacaaa
gggatcttgatgcaagaaggttctctgttcgggagttgcagcgtcagccagatgtttgac
agctccacctctggtgcagacctgtacctggaacagggagacatcgcccagtttgagccg
cccttcctcggctcaggatggaccgtcctctgtctggccgatggagctcggggcacagcg
cccaaaccggctctggagccagtcatccctttccatcaatggtttctcaaatcctgtgga
gaaagtattctggtcggtgatgggaaacctgcctgtgactttcctttgcagtttgccaga
gggaagtgtgtggccacacagatgcacgacgctgagtgtccggatgagctgagcgtggcg
cctggcgacgtcattatcatcatgggacttctagtttcatgttttgactggttcaccggg
aaaaaggaggccaccggagaagttggtcttgtgaagacgagctttgtggaagtttcctct
gaaacctcagactcagaagacgtgttcttggactcaaaggaatggatgttcaacactcag
aaagaggaagaaatcatcaaagaatcaattgatgagttaaagagaaaatctctgaatgat
gtcggtcaaaactacaaactagatactatccattaccaagactctgaaaacaaaacaaga
tctccagacactaaaccttcaccaaaaaaactcaggaaatatatccggaggattctagct
ccagagaaatattcctctttagcttcttcagtaatcgagaatgaagttctagaagacact
aagcagacagcacgcctgccctgctttacggttctaccagttgtcgatggagaaaacttt
atcgagaacttcagtcccttcttttcctttttggatggacaagatttcaaagaggagttt
gctgttttgtatggtctgagttctgagaatcttagctccaccttctttgaaggtcacgca
gacgacgacgagcttatttccttcctgggtgttgccagggaaacggccaggaagagacgc
ctctactggatgcaaacgcgtttgtgtttcctgctaggcaagttctgtgccggcaagttg
aagttcagccaagcacgcgtttacttcgaggagtctcttggtatcccgagagaaaccttc
acggacctccggctgctggccagcatctactctaacctggccaccatttatctcctgcag
aaaaacagagacagcttctttggggtcgctgagcgcctcagtgccttcctgctgggagtc
cctgattgcttgaaaagcttagaggacaacatggttctgaaatatatgctaaagaaagcg
gttctcgctcacaacagaagggcggaggctcgcgcttgttatctgctggcgaagcaccac
tggatcaaaggagaggggaatcaggtgattccttacttggaaaggcttcttgttgtttgg
gatgaagctcagagaaaagaagacgtttctcctagtcatggatacctggttttaggagag
ctgtacagaaaattccaccttctccacctcagcaccagctctgccaggagagcgtctcta
cagccctctgcctctctgtcggaccgcctcggcagcatgatgttggttctgacaacagat
ggggaggcgtctgttccacctcggctggctccgtatttataccgctcgcttgctttcatt
gaggtccaggaagaagaaggagcgggtcttcatcaccgtgctctgagccatcaactcacc
ctgtctctctgccaactgttctacaagtacaaaatgattgaccacgcgatccaccgtatg
cattctctcatcaaaagcaagtggtcctcaaaggaagtctcagtgtcagacaggaacagc
gccctcatctggctggcgtggcttcacattgagaaccatcagccctctattgctctagac
atcctgaacctgttcttagcgtccacgtctgaagactgcaaatcccctcaacaaggagtg
gtcttgaacatgcgcggtgtggcactccgctgcatgggcgaccaccgcagcgccgcagag
agctaccaggccgccgtggacgtctgcagggagtacgaagacatgccaaactgggccgtg
gctcaggctaatctgggcctgctgttcctgaaggcgggcgctaaagggttagcgcagagg
aagctgactgaggcgcttcagctcttctcggagctcagtgaggagaaccacgaggcgaac
ttcatcgccgtgctgctagagctcggacagcactacgtggagcagcggcaggtggagttt
gggaaaggatgctacgagtgggctctgctgctggccatgaaagccaaactggcagattat
cagctcagggcaaccagacacctgtgtcatctgtacgaacatgagagtccagaccagacc
cagtgcatcatctacaaccggcacctgatccagctgctgagatgctctggaaacagagcc
gaggagggaaacgcactggaagcaatcagccagttgtacctggctctgggcacagacagg
gcgtaccgggccgctctggactacacgaaaagcagtctcatgatcttcatcgacctgggc
tggaaggagaaagaagcgtacggctggctgaaagcggggaagatccaccacctactcggc
caaaccgagctggtggacatctacgttcaggcagcccaggatgtggctctgagcaccgga
gacaccggcttcatcctgaatcttctggaagctgcaggagacatcttctgggacagctgt
caggactacgagaaggccgtcaccttctacagagaccgggctctgcccattgcagtgaag
atcagcagcactcagtccagactgaggctgagcaacaagctgactgaagtcatgctcgct
ctcaagtcctacagtgaggctgcggagtttgcccacactgctgttgacatcagcgccagt
gcgggactgcgtctgaatgagcgagtggcctaccatcggctagcctttgtgtaccaacac
ctggaacagtctgagctagcagaacactactacctgaaggcactggcgctctgtccaagt
cctctgcagtttgacgaggaaacgctgtactatgtcagggtgtaccagacacttggagac
atcatattctaccacctgaaggacccattcgatgccgctggatactaccacctggctctg
gctgcagcaatggatctgggcaacaagaggtcccagctgcagctgtgcacgcgcctcgcc
accatttaccacaacttcctcatagaccgggagcgctccctgttcttctaccagaaggcc
agaagctttgccacagagttaaacgtgaaacgaatcaacatctcagcagatcggcagcac
gtcagcatgtttcagcacagcacacagtag
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integrated database retrieval system
