Oryzias melastigma (Indian medaka): 112162007
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Entry
112162007 CDS
T07439
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04141
Protein processing in endoplasmic reticulum
oml04210
Apoptosis
oml04217
Necroptosis
oml04218
Cellular senescence
oml04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112162007 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112162007 (capn1a)
04217 Necroptosis
112162007 (capn1a)
04218 Cellular senescence
112162007 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112162007 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oml01002
]
112162007 (capn1a)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
112162007 (capn1a)
Peptidases and inhibitors [BR:
oml01002
]
Cysteine peptidases
Family C2: calpain family
112162007 (capn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
112162007
NCBI-ProteinID:
XP_024153380
Ensembl:
ENSOMEG00000021852
LinkDB
All DBs
Position
LG15:complement(26202268..26213794)
Genome browser
AA seq
727 aa
AA seq
DB search
MSFVLFIEGSVHATNSVFLSCTSMYPAGGISAAIYTNRLRSEGMGSKDNAVLFDNQDYES
LKRDCLESGCLFEDPCFPAEPPSLGFKELAPHSSKTRDVEWIRPTELTSDPQFIVGGATR
TDICQGALGDCWLLAAIASLTLNERLLHRVVPHGQSFQEEYAGIFHFQFWQFGEWVDVVI
DDRLPVKDGELMFVHSAEGNEFWSALMEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEM
YELRKAPRDLHRIIAKALERGSLLGCSIDITSAFDMEAVTFKKLVKGHAYSVTGLKEVDY
RGNMVRLIRIRNPWGQVEWTGAWSDNSHEWNDVDPSDREDLHLKMEDGEFWMSFSDFLRQ
FSRLEICNLTPDALSEDALSHWNTMKFYGTWRRGSTAGGCRNHPNTFWINPQYKITLLEE
DDDPEDNEVACSFLVALMQKDRRRYRRHGQDMHTIGFALYEIPEEYRGCQNVHLKKNFFL
SHSSCARSETFINLREVSARLRLPPGEYLIVPSTFEPSKEADFVLRVFTEKQSETEELDD
EISADFGDEEEITEDDIDDSFKSMFAQLAGEDMEISIRELKTILNRVISRHKDLKTDGFS
TESCRTMVNLLDKDGSARLGLLEFQILWNKIRKWLGIFREFDLDKSGAMSSYEMRLAVEG
AGFKLNNQLNQILVARYADNEMIDFDNFICCLVKLEAMFKSFQELNRDGSGVVEMNLTEW
LYLTMCG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgtgctatttatagaaggcagcgtgcatgccaccaactccgtgtttctgtct
tgcaccagtatgtatccagctggagggatatctgctgccatttacaccaacaggcttcgc
tctgaggggatgggctccaaggacaacgccgtgctctttgacaaccaggactacgagtcc
ctgaagcgggactgcttggagtcgggttgtctcttcgaggacccctgcttcccagctgag
cctccgtctttgggctttaaggagctcgcgccacattcctctaaaaccagagatgtggaa
tggatcagacccacggagctgacgagtgacccccagttcatcgtaggaggagccaccaga
acagacatctgccagggcgctcttggtgactgctggcttttagcggccatcgcctctctg
accctgaatgagaggctcctgcaccgcgttgttccacatggccagtccttccaggaagag
tacgctggaatctttcactttcagttctggcagtttggcgaatgggtggatgttgtgatt
gacgatcgattgccagtgaaagacggagagctgatgtttgtacattcagctgaaggcaac
gagttctggagcgcactcatggagaaagcttatgccaagctgaacggctcctacgaggct
ctgtctggaggaagcaccactgagggctttgaggacttcacaggtggagtgtctgagatg
tacgagctgcggaaagctcccagagatctgcacaggattatcgccaaagctctggagaga
ggctccctgctgggatgctctattgatattacaagtgccttcgatatggaggctgttaca
ttcaagaagcttgtgaaaggacacgcgtactcagtgactggactgaaggaggttgattac
cgtggtaacatggttcgcctcatcagaatacgaaacccgtggggacaggtggagtggacc
ggagcttggagcgacaactcccatgaatggaacgatgtcgacccctctgaccgagaagac
ttgcacctcaaaatggaagatggcgagttttggatgtccttcagcgattttctgaggcag
ttttcccgtctggagatctgcaacttgactccagacgctctgagtgaagacgccctcagc
cactggaacaccatgaagttctacggcacgtggagacggggcagcaccgccgggggctgc
aggaaccaccccaacaccttctggatcaacccgcagtataaaatcactctgctggaggaa
gacgacgaccccgaggacaatgaggtggcgtgcagctttttagttgccctcatgcagaag
gaccgccgcaggtatcggcgccacggtcaagacatgcacaccattggctttgccctctat
gagattccagaggagtacaggggctgtcagaacgtccatttgaaaaaaaacttcttcctg
agtcactcctcgtgcgctcgctcagagaccttcatcaacttgcgggaggtaagcgctcgg
ctgcgtctacctcctggagagtacctcattgttccctccacctttgagcccagcaaagag
gccgactttgtcctcagagtcttcacagagaagcagtccgagactgaggagctggatgat
gagatttctgctgactttggagatgaggaagaaataacagaagatgacattgatgactct
tttaaatccatgtttgctcaactagcaggagaggacatggagatttctattcgcgagctt
aagaccattctaaacagagtcatctctcgtcacaaggatctgaagacggatggatttagc
acggaatcgtgtcggaccatggttaacctactggataaagatggcagcgcccgcttagga
ctcttggagtttcagatcctctggaacaagatcagaaagtggcttggcattttcagggag
tttgatctcgacaaatcgggggccatgagctcatacgagatgcggctggcagtggaggga
gcaggctttaaactgaataatcagctgaaccagattctggtggcccgctatgcagacaat
gagatgattgactttgacaacttcatctgctgcttggtcaagctggaagcaatgtttaag
tctttccaggagttgaacagagatggatcaggagttgttgagatgaatctcacagagtgg
ctttacttgaccatgtgtggttga
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