Oncorhynchus masou masou (cherry salmon): 135509127
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Entry
135509127 CDS
T10723
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135509127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135509127
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135509127
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135509127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
135509127
NCBI-ProteinID:
XP_064785562
LinkDB
All DBs
Position
22:complement(18422856..18458193)
Genome browser
AA seq
2427 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKRNYRASQQDIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLRTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKGDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVTQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGLLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQALSQPPKAPQPGQPSTLVTTATTTTTVAKNTTITRPTPGSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV
IFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLK
SLEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATG
PPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
SFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQP
TGFLAQPMKQQAWATDDVAQIYDKCMVDLEQHLHAIPPALAMNPQTQALRSLLEAVALAR
NSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQI
TRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLL
VDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNF
MMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILK
TDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHS
GEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLET
INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
LFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRN
LILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPV
TFLSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCSML
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEI
EKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagagaaactacagagccagccagcaggatatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttgttacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctttctcatcttctttttggacagaagggagccagcggggtcggacaa
gagcagattgacgcgttcctcaggaccctgtgcagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctataccctgaaaaacgagacattctgatggacaggattctg
ccagactcgggagagttagcaaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtctcgatgaatgccgcaacataatcctacagtat
ggggtgcgggaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaggtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaattttaaagaggtgacctatgag
cttgaccaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgttgacctaatctaccgtccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacactgtagcaattgacatactgaaggccccacctgaggac
gataaccgagagatagccacctggaagagcctagacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccttgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatt
ttacactatgcctggcatggacagggccagtccccctctatccgtcagctgatcatgcac
tcaatggctgagtggtacatgagaggggagcagtacgaccaggccaagctgtcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgcttaatggtactccatttgcc
ttcgttatcgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagccctttatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaagaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtcactcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagttctgccacctctcacaca
cagagtatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctccactgtctaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtctgctgggatcaggcattggctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacgaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
cagaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgttgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gcccttcgatatgtactcgaagccttgaggaagccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcaggggtccatcacc
accccaggcagcctggcgttggcgcaagctcaggccttgtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagctaccaccaccaccactgtcgccaaa
aacactaccatcacccggcctacccctggcagcttcaagaaggatgtgccgccctccatc
aacaccacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaa
cccccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaac
atgacacagaaggttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtc
tctcagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactcc
aacttcttggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttac
agaaacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcc
ctactgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatc
ctgtacacagatttggaggtgaaatccctgttgttggaagcgtatgtcaaagggcagcag
gagctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtg
attttccgaccccagaatccctggacgatggccatcatgaatgttctggcagagctgcat
acagagcatgatctcaagctgaacttgaagtttgagattgaggtgctgtgtaagaactta
tcattggacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaag
agcctggaggaacagctgtctgcaccaaagaaagaggccaagccccctgaagaaatgctc
cctgttgttagcacaggtatccagcactttcaaattgggatgccccttgtcggagacttt
cttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggt
ccccctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcc
cctcacatcaatatcaacatcaacatccccttgctccaagcccatcctcagctgaagcag
tgtgtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggaccgt
tccatcaagatcgccatgactacctgcgagcagattgtcaggaaggactttgccctggac
tccgaggagtcgcgcatgcgtgtggctgcccatcacatgatgcgtaacctgaccgccggc
atggccatgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaagaac
agctttgcagcagccctcagggcccccaccccccagcagagagagatgatggaggaggct
gctgctagggttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgca
gtggagaaggctggcccagagatggacaagagactggccacggagtttgagctgaggaag
cacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagag
cgcatgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcggtg
tacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagccc
actggattccttgcccagcccatgaagcaacaggcatgggccacagacgatgtggctcag
atttatgacaagtgcatggtggacctggagcagcacctccatgccatccccccagcgctg
gccatgaacccccagactcaagccctgcgcagtctgctggaggcagtggccctagccagg
aactcaagggatggcattgctgctctgggcctgctacagaaggctgtggagggtctgctc
gatgccaccagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctgctg
gtgctcaaagccctccaggacggacgggcatacggaccacaatggtgcaacaaacagatt
accaggtgcctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggagctg
ctgatcagaaaccacctggtcaacatgcagcagtacgacttgcacctggcacagtctatg
gagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctg
gtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagact
ctgatgagaaccagcgcacactcgagggccaatgcacccgaggggcttcctcagctgatg
gatgtggtccgctctaactacgaggccatgatcgaccgggcccatggaggacccaacttt
atgatgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggag
aaggcggagtacttgctgagggaatgggtcaacctgtatcactctgcagctgccggccgg
gacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaag
accgatgacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatcagc
taccgcgcccaggccgagcagcagcacaatcctgcggccagcgccgccatcatcagagcc
aagtgctaccacaacctggacgcctttgttcgcctcatcgctctgctggtcaagcactct
ggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtg
gttggagtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttac
caccgcatcttcatcatgctgctgcttgagctcaatgcccccgagcatgtgctggagacc
atcaacttccagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaa
gcccctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgccagg
atgctggcacacaccccacagcagaagggttggcccatgtatgcccagctgctcattgat
cttttcaaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatc
ctctacaagggtaccctgcgtgtcctgcttgtcttgctgcatgacttcccagagttcctg
tgtgactaccactacggcttctgtgatgtcatcccgcccaactgcatccagctccgcaac
ctgatcctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaatctg
aaggttgacatgctcagcgagatcaacattgctccacgcatcctcactaacttcaccgga
gtgatgccctctcagttcaagaaggatctggactcgtacctgaagacgcgctcccctgtc
accttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctgg
aagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgt
tacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacac
atccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatggac
atcttccagaacctggctgtggacctggacactgaggggcgctatctcttcctgaatgcg
attgctaatcagctgcgctacccaaacagccacacccattacttcagctgctccatgctc
tacctgtttgctgaggccaacacggaggcaatccaggagcagatcaccagggttcttctg
gagaggctgattgtgaacaggcctcacccctggggactgctcatcacgttcatcgagctc
atcaagaaccctgccttcaagttctggagccatgactttgtgcactgtgccccggagatc
gaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtg
atggagggcactggtgccagttag
DBGET
integrated database retrieval system
