Oncorhynchus masou masou (cherry salmon): 135510759
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Entry
135510759 CDS
T10723
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135510759
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135510759
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
135510759
NCBI-ProteinID:
XP_064788009
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Position
23:complement(32519838..32647682)
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AA seq
517 aa
AA seq
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MVFPKINHGFLSADQQLIKRRLIKGDQGSAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVP
GLPGDPGTPGELGLMGPEGPPGQKGSLGPPGIPGVDGLKGEMGERGEKGDMGEDGQKGEI
GEKGDAGSSAAGIKGEPGESGRGGSKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPG
TKGERGELGPPGKGERGEPGQAGQKGGPGEAGNPGPRGSKGETGDKGDLGSMGPWGPPGQ
KGDQGATEIIDYNGNIQEALQKITTITVTGPPGPPGLSGPAGIKGDQGMPGLPGLDGERG
FKGSKGDMGIPGTSGDKGTVGLPGLPGVNGLKGDKGDSGLPGPEGPSIIGQPGAPGPHGP
PGPMGPHGFPGPKGEAGNHGLKGVRGESGHKGDRGPLGLPGASGLDSKPGIRGMDGPVGS
SGPAGPKGDRGERGAAGELGPRGPYGLPGAAGTPGLDGLPGLRGEKGDPGERGEKGEKGK
KGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggtcttccctaagatcaatcatggctttctttctgctgaccagcagctcataaagcgg
cggcttattaagggagatcagggttcggcaggtccaccagggcctcctggacccccaggt
ccccctggcccccgagggccaccaggggacacaggcaaggatgggccccggggagtgcca
ggtctgccgggagatcccgggaccccaggagagctaggactaatgggacctgaggggcca
ccaggacaaaagggttccctcgggcctcctggcatcccaggtgttgatgggctgaagggt
gaaatgggagagcgaggtgaaaagggtgacatgggagaagatgggcaaaaaggtgaaatc
ggggagaagggtgatgcaggctcctctgctgcaggcattaagggtgaaccaggagagtca
ggacgtgggggatcaaagggagagccaggacttccagggctgcctggacttcccgggatt
aagggtgagcctggattcctaggacctcagggagaaccagggctcccaggactaccggga
accaagggcgagcgaggggaacttggtccaccaggcaagggagagcggggcgagcctgga
caggccggtcaaaagggggggccaggagaggcagggaacccaggccctagaggttcaaag
ggagagacaggagacaagggagacctgggctctatgggaccatggggaccccctgggcag
aaaggtgaccaaggagccactgaaatcattgattacaacgggaacatccaagaagcttta
cagaagattaccactattacagtgacgggtccccctgggcctcctggactatcaggacca
gcgggaatcaagggagatcaaggcatgcctggcctccctggactggacggtgaaaggggt
ttcaaaggttccaaaggagacatgggaatccctggcacatctggagataaaggaactgtt
ggtttacctggtttaccaggtgtcaatggattgaaaggagataagggtgattctggtctg
cctggtcccgaagggccctcaattattggccaacctggagcacctgggccccatggcccc
ccaggccccatgggaccccatggcttccctggaccaaagggggaggctgggaatcatggt
ctgaagggagtacgcggggagtcagggcacaagggagacagaggacccctgggcctcccc
ggagcctccggcttggacagcaagcctggaattaggggtatggacgggcctgttggttcc
tccggtccagctgggccaaagggggacagaggtgagagaggagctgcaggtgaactcggg
ccaaggggaccttatggacttcctggagcggctggaacacctggccttgatgggttgccg
ggcttaaggggagagaaaggcgacccgggggaaagaggagaaaagggggagaagggaaag
aaggggaaaaaagggcctaagggggagaaaggagaacagggtgcccctggattagatgca
ccctgcccattgggcccagacggactaccaatgcctggttgttggcaaaagtga
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