Oncorhynchus masou masou (cherry salmon): 135516235
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Entry
135516235 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 10-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135516235
Membrane trafficking [BR:
omm04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
135516235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
PBSX_XtrA
Motif
Other DBs
NCBI-GeneID:
135516235
NCBI-ProteinID:
XP_064796451
LinkDB
All DBs
Position
27:43325116..43342330
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AA seq
1058 aa
AA seq
DB search
MTVSFNLCVINILFVTAYSSLELVSSTAHCGRSPQVLEAARGEIRSFVHRSSSYRPRPFY
CSWIIKAHVGESVILSFSQFSTRCKKEWVSVTSSTGKPITLCGSDLPKPMELMGGNITVK
HHFLPHLFPVSAFRLGYVRDSGDCTGVDFECLGGRCLPLSWRCNGRVECLGEGVGLGIDE
QDCDGEMKILNLDPEHGKTVVATATPESYRARETGREKNGGSNSRGRDWETVGKAPGKLE
KEEEETEKQVDVNGDHTKEKEPTNPIYDFWQFQAHRAHPSVTRAPVEWPCGGLLQAFYGT
FTPPAIRGPSLFCVWTLDPQESRPLKLDLRLLELGPGDTVTITDRQQGTGELLKTITSAS
NYKTIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKCGGAEGGCYTQEQKC
DGHWDCPETGHDEAGCRGCPRDQFACGVAGQRALLVGHSFLGHPVCFPAKERCNYQLYCS
DGSDERDCSICQPGTFHCDSDRCVFESWRCDGQLDCKDGTDELNCTVTLPPKVVTCGGLL
QTFYGTFSPPSIRGPPLFCVWTLDPQDSRPLKLDLRLLELGPGDTVTITDRQQGTGELLK
TITNASNYKTIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKCGGAAGGCY
TQEQKCDGHWDCPETGHDEAGCRGCPRDQFACGVAGQRALLVGHSFLGRPVCFPAKERCN
YQLYCSDGSDERDCSICQPGTFHCDSDRCVFESWRCDGQVDCKDGTDELNCSVTLPRKVI
TAATVGSLVCGLLLVIAMGCTCKLYSLRTREYSMFAPISRQEAALIQQQAPPSYGQLIAQ
GIIPPVEDFPTENPNESSSLTLRGILQLLRQDTANSPRRRRRPRFVRRAVRRMRRWGLIP
RTASRPSQPSSSXPQQTDPTSTGAEPSQSTPATSSLAVEAVNLPLPQKLGLLPQTVQHPP
PPPPASLPPPLVSIPATPQSFPVAAPPTPSSPSLASLFHSLGRGISRFRASPFSSSPTNS
LPLSASPSFSSSEDEVLLIPLSEDMTSEDDVPLLTLDP
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctctttcaacctttgtgtcatcaacattttgtttgtaactgcctacagcagc
ctggagctggtctccagtactgctcattgtggacgatctccccaagtcctggaggctgcg
agaggagagatcagaagctttgtgcaccgcagctcgtcctaccgccctcggcccttctac
tgtagttggattatcaaggcacatgtaggagagtctgttattctcagtttctcccagttt
tccacacggtgtaagaaggaatgggtctcggtgacgtcatcgactggcaagcccattacc
ctctgtggttccgacctgccgaaacccatggagttgatggggggaaacattacagtgaag
caccacttcctgccacacttattccctgtgtctgcgttccgcctgggctatgtcagagac
tccggggactgtacgggtgtggactttgagtgtttgggcgggcgctgcctgcccctgtcg
tggcgttgtaacggccgggtggagtgcctgggtgaaggggtgggactgggcatagacgag
caagactgtgatggagagatgaagatcctgaatttggatcctgagcatggcaaaacagtg
gtggccaccgccacaccagagtcctacagggcgcgggagaccggaagagagaagaacggg
gggagtaacagcagagggagggattgggaaacagtagggaaggcaccgggcaagctggaa
aaagaggaggaggagacagagaagcaagtagatgtgaatggggaccacaccaaggaaaag
gagccaaccaatcctatatatgacttctggcagttccaggctcacagagcccaccccagt
gtgacccgggcccccgttgagtggccctgcgggggcctcctccaggccttttatgggacg
ttcacccctcctgccatcagaggcccctctctgttctgtgtgtggaccctggacccccag
gagtctaggcctctgaaactggacctgcggctgctggagctggggcctggagacacggtc
accatcactgacagacagcagggcaccggggaactcctcaaaactatcaccagcgcgtcc
aattacaagaccatccaggtcgagtcccggaccggcctcctctccctgacctatcgtacg
ctccccggctctgaggggctgggcttcaacgccacctaccgtgtcgggggctactgcccc
ccctgggaaggtaaatgtgggggtgccgaggggggctgctacacccaggaacagaagtgt
gacgggcactgggactgtcccgagacgggacatgacgaagcagggtgcaggggatgtccc
cgggaccagtttgcctgtggagtggctgggcagagggcactgctggtggggcatagcttc
ctagggcatccggtgtgtttccctgccaaggagaggtgtaactaccagctgtactgttct
gatgggagtgatgagagagactgttctatatgtcaacctgggaccttccactgcgacagt
gacaggtgtgtttttgagagctggcgctgtgacggccagctggactgcaaggacgggaca
gacgagctgaactgcaccgtgaccctacctcccaaggtcgtcacctgcgggggcctcctc
cagaccttctatgggacgttctcccctccttccatcaggggcccccctctgttctgtgtg
tggaccctggacccccaggactctaggcctctgaagctggacctgcggctgctggagctg
gggcctggagacacggtcaccatcactgacagacagcagggcaccggggaactcctcaaa
actatcactaatgcgtccaattacaagaccatccaggtcgagtcccggaccggcctcctc
tccctgacctatcgtacgctccccggctctgaggggctaggcttcaacgccacctaccgt
gttgggggctactgccccccctgggaaggtaaatgtgggggtgccgcagggggctgctac
acccaggaacagaagtgtgacgggcactgggactgtcccgagacgggacatgacgaagca
gggtgcaggggatgtccccgggaccagtttgcctgtggagtggctgggcagagggcactg
ctggtggggcatagcttcctagggcgtccggtgtgtttccctgccaaggagaggtgtaac
taccagctgtactgttctgatgggagtgatgagagagactgttctatatgtcaacctggg
accttccactgcgacagtgacaggtgtgtgtttgagagctggcgctgtgacggccaggtg
gactgcaaggacgggacagacgagctgaactgttccgtgaccctgcctcggaaggtcatc
accgcggcaaccgttggcagcttggtctgtgggctgttgctggtcatcgctatgggctgc
acctgcaagctttactcactgcgcacccgagaatacagtatgtttgctccaatcagccgc
caagaggcggcgctgatccagcagcaggctcctccctcctacggtcagctgattgcccag
ggcatcatccctccagtggaggacttccccacagagaaccccaatgagtcttcctctctt
actctgagaggtatcctccagctcctcagacaggacaccgccaactctccacgtcgccgc
cgccggccccgattcgtccgccgtgctgtccgtcgcatgcggaggtggggcttaatccct
agaaccgcctccaggccctcccagccttctagttccnacccccagcagacagatcccacc
tctactggtgcagagcccagtcaatcaactcccgcaacttcctcattggctgtggaagcc
gtcaatctgccgttgccacagaaactaggcttgctccctcagacggtgcagcacccacca
ccgccgcctcccgcctcccttcctccacccctcgtctctatcccagccaccccccagagc
ttccctgtggctgcccctcccacccccagtagcccctccctggcctcgctctttcactct
ctggggcgcggtatctctcgcttccgcgcctcaccgttctcctcctcccccaccaactcc
ctgcccctctccgcatccccctctttctcctcttcggaggatgaggtgctgcttatcccc
ctctcggaggacatgacctcggaggatgacgtccccctgctaacccttgatccctga
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