Oncorhynchus masou masou (cherry salmon): 135517480
Help
Entry
135517480 CDS
T10723
Name
(RefSeq) collectin-12-like isoform X1
KO
K10062
collectin sub-family member 12
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
135517480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135517480
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
omm04091
]
135517480
Membrane trafficking [BR:
omm04131
]
Endocytosis
Phagocytosis
Opsonins
135517480
Lectins [BR:
omm04091
]
C-Type lectins
Asialoglycoprotein and DC receptors
135517480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COLEC12
Collagen
Lectin_C
Rod_CreS
UL45
Filament
AAA_13
Chordopox_A33R
Fib_alpha
Lipase_2
ENOX1
Laminin_II
Ly49
Alpha-2-MRAP_C
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
135517480
NCBI-ProteinID:
XP_064797878
LinkDB
All DBs
Position
28:28139334..28206235
Genome browser
AA seq
765 aa
AA seq
DB search
MPTDDFADEEEVQSFGYKRFGIQEGTQCTKCKNEWALKTSIALLYVLCTLLTIAVAVLGY
KVVQKVDNVSEGIESYGGKIIAVETDLKKLDDQTGEKSENTTTEIQAFKNNIRALQRQLS
EVAERSSSNRAALGRLQDSGLDMQGSQGSIQGLLDANTAALRSVNGTLRAYGGTMEGLQE
DTARLQTELQEQVRQQSQALLSIGNLNLTQAQQRGLISALQRSVDDTSQAIQKIRNDFQS
LEQTARQTKSDADWLKEKVQNLQVLASNASALAKSNNDSLEDVGSQLASLSGQLQNTSSL
AENHDQTLREIMDQQRDHDNLTSSKFDQLEIRLDESEGSIDRVTGNISFTTQLLGAINLN
LNELRTCAETVGRHSDYLSDLNATVSDVRSDATTLRSQQDDLVARLDKEVTSLSIIMEEM
KLVDSKHSQLITNFTILQGPPGPRGPRGDKGPQGGAGQPGQKGEKGDTGGPGVQGLRGEK
GFPGPPGIQGFKGQPGSRGNPGSKGSRGSGGRAGPPGANGEPGTAGLPGRDGQAGPQGPQ
GPSGDRGQVGPAGAQGPRGPVGPMGAPGPPGLPGFTARSAAAAAVPLVPFSMQSEAPAPT
VSAPGCPQEWVGFRDKCYHFSKELYNFDDAKKSCDAQTASMVIINDNDEQKWLQKQTSGK
GYFWMGLTDREEENAWRWLDGTEPAFSQWKPGQPDNWSHGHERGEDCAGLIHEGLWNDFF
CEDLISYICEKAMKYPKNSRIIAPSVEGAETEEAWLSQRRYDEHH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcccacagacgattttgcagacgaggaggaagtacagtcttttggatacaagaggttc
gggatccaggaggggacccagtgcactaagtgtaagaatgagtgggcgttaaagacctcc
atagcactactctacgtgctgtgcactctactcaccatcgctgtggctgtcctcgggtat
aaagtggtgcaaaaggttgacaatgtgtccgaaggtatcgagagctatggggggaagatc
attgctgtggaaacagacttgaaaaagctagatgaccagactggggagaagtcggagaac
actaccacagagatccaggcctttaagaacaacatccgagctctgcagcggcagctgtct
gaggtggcagagaggagcagcagtaaccgggcggccctgggtcgtctgcaggattctggc
ctggacatgcagggcagccagggctccatacagggtctgctggatgccaacacggccgcg
ctgaggtcggtcaatggcaccctgcgggcctacggtggcaccatggagggtcttcaggag
gacacggctcggctgcaaactgagctccaggagcaggttcggcagcagagccaggccctg
ctgagcatcgggaatcttaacctcacccaggcccaacagagggggctgatctcggctttg
cagagatctgtggacgacaccagccaggccatccagaagatccgaaacgacttccagagc
ctggagcagacggccaggcagacgaagtcggacgctgattggctgaaggagaaagtgcag
aacctccaggtgctggcctccaacgcctctgccctggccaagtccaacaacgacagcctg
gaggatgtgggatctcagctggcttcgctgtctggacagctccagaacacctccagcctg
gcagagaaccacgaccagactcttagggagatcatggaccagcagcgcgaccacgacaac
ctcacctcctctaagttcgaccagctggagatacgcctggacgagtcagaggggagcatc
gaccgtgtgacaggcaacatcagctttactacccaactcctgggcgccatcaacctgaac
ctcaacgagctgcgcacctgcgctgagacagtggggcgccactccgactacctgtccgac
ttgaatgccactgtgtcggacgtgaggtcggacgccaccacactgaggtcgcagcaggac
gacctggtggcccgcctggacaaggaggtcaccagcctctctatcatcatggaggagatg
aagctggtagacagcaaacactcacagctcatcaccaacttcaccatcctacagggtcca
cctggtccaagaggcccacggggagacaaaggaccccagggaggagccggtcagcccggt
cagaaaggggagaaaggggatacaggtgggcctggggtgcaggggctccgtggagagaag
ggatttccaggaccaccaggaatacaagggttcaaaggtcagccaggctcacgggggaac
ccaggttcaaagggctcccgagggtcaggaggcagagcaggacccccgggagcgaatggt
gagccaggcactgctgggctccctgggagagatggacaggccggtcctcaggggccacaa
ggtccgtcgggagaccgaggacaggtggggccggctggggcacagggacccaggggacca
gtggggcccatgggggccccagggccacctggactgccaggattcactgcccgatctgca
gcagcagcagcggtgcctttggtccctttctcgatgcagagtgaggcccccgcacctact
gtgtcggccccaggttgtcctcaagagtgggttggcttcagagacaaatgctatcacttc
tccaaagagctgtacaactttgacgatgcaaagaaaagctgtgatgcccagactgcgtca
atggtgatcattaacgataacgatgaacagaaatggctgcaaaagcagacctctggaaag
ggctacttctggatgggtctgacagacagggaggaggagaatgcatggcgctggctggat
ggaaccgaacctgccttctcgcagtggaagccaggacagccagacaactggagccacggg
cacgagagaggagaggactgcgctggcctcatccacgagggactgtggaatgatttcttc
tgtgaagatctcatcagctacatctgcgagaaagccatgaagtatcccaaaaactccagg
attatagcgccctctgtggaaggagcagaaacagaggaggcatggttgagtcagaggcgg
tatgatgagcatcattag
DBGET
integrated database retrieval system
