Oncorhynchus masou masou (cherry salmon): 135520432
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Entry
135520432 CDS
T10723
Symbol
skic3
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135520432 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135520432 (skic3)
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
135520432 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_19
TPR_14
TPR_8
TPR_11
TPR_17
TPR_9
TPR_12
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_15
ANAPC3
TPR_EMC2
ARM_TT21_C
Fis1_TPR_C
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
135520432
NCBI-ProteinID:
XP_064802108
LinkDB
All DBs
Position
1:complement(15814196..15853631)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEAIR
KLADIFHMEKDYLQVARLWRRLIQLKEGEGANKAELLQLWQQMTCLLSDSMEDHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRXLSADYLKCLSQLSHEECKIKEACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGAGEEALGQKLLRLRLEALVRTGD
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDMAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMNEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARCLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELRTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVHVYSSTPLEVLHDLAGLALAYCRAGLIPESISAYEKALMVTS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSSG
TALPASVLEQLSSAVSANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMSKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFSTKMSA
RETRRLLERLVYFPSQGYPETVACVARWYLLRHLHAKDDFELMDTLVDDAKASGDSRLLE
FHTRLTTS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcagctttaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggcgctaaaacactgcaaggctgccctgaaattagagaagaacaattac
aatgcctgggtgttcattggtgtggctgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaggcgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccaggttgtggcga
aggctgattcagctgaaggaaggagaaggtgctaacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggatcacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctctgacaatgtgcctggcgaggac
catcggnagctctcagctgactacctcaaatgcctttcacaactttcgcatgaggagtgt
aaaattaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtggggctggagaa
gaggcactgggacaaaagctcctgaggctgaggctagaggcccttgtgaggactggggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgat
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtgtccacggagctgctgaactctcaccctgacatggctgagggactggcgctg
aggggactggcacacattgcacagggacatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccagcctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccagaggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaatgagggggacatggac
actgccctggctgtgctccagtcagtgattcagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagaatacctgcagatcatagcccaggaggactatgtg
cctgcactcaaaggtcttggggagtgtctgctgtccttggccagatgcctgatggaggac
tatagagatggaggagccatagacctcatccagcaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccggatta
caacccccagaccaaggccaccttctcaaccaaggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagatggagcacaacacc
ctgctactgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaacgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagacagtgttgagctgtcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcaggacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcaactaaagaagcaggcagtgctggct
taccagagagctgtggagttgctgcaggctacgccttccgtggagttactggccttctcc
cttggaagctatggccgtgccctctgcaacacaggccaatgggaggaggcggtgcacgtt
tactcttccacacctctagaggttctccacgacttggctggtctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtgacctct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactctgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggcttgtccatggggacagcaccctggccagc
gcggccctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaacgc
tgcctgctcacctgcaccttgctggcactgcagggcaactacagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccctgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgttgcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcatgtggcaggcactctggagaagatcgcagcaggaacgccctgaagaccatgcagagg
gctgtgctactctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctttctggctccacccctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagagaaagtacggaatgtggaggaggtggaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtctagttccggt
actgccctgccagcttctgtcctggagcagctcagcagtgccgtctcagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgacctccacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcccctgcatgtcgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccactgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaagccctgctacacttctccacaaagatgtctgcc
agggagacgcggcgtttgttggagaggctggtgtacttcccctcccaaggttacccagag
actgtggcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacttt
gagctgatggacaccctggtggatgacgccaaagccagtggagacagcagactgctggag
ttccacacacgactcaccacttcctga
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