Oncorhynchus masou masou (cherry salmon): 135520813
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Entry
135520813 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04518
Integrin signaling
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135520813
04518 Integrin signaling
135520813
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135520813
09142 Cell motility
04820 Cytoskeleton in muscle cells
135520813
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omm04147
]
135520813
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135520813
Exosome [BR:
omm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135520813
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135520813
Hyaluronan
Extracellular matrix or blood plasma proteins
135520813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Kunitz_BPTI
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
135520813
NCBI-ProteinID:
XP_064802678
LinkDB
All DBs
Position
29:83726636..83762233
Genome browser
AA seq
2728 aa
AA seq
DB search
MEGTQGLLAIFTIATCFLVNGAQKTVCKEEAVADIVFLVDGSWSIGSENFKQIRQFLFTL
VNSFDVAPDQVRIGLVQYSNTPRTEFLLNTFQDKQDILQYITNLRYMGGETNTGLGLDFL
LNELFVDRAGSRVNENVPQIGVVITDGESMDNVGLHALKLKKQGVTLYAIGIKEADEDQL
KEIATTPHNHHVYSVSDFAALQGISQSLIQVLCTTVDEAKRPISKVVQECLNATVADIVF
LVDGSTSISPTNFQEVRRFLHSFIEGLDIGADKVRVGLAQFSNEIQKQFHLGEHTDQRAL
LEQVDRLPQLGGGTATGKAITVLREEFFTKANGSRADQRVPQIAVVLTDGESADNITLPA
KALRQQGVIVFAIGVGAANINELKYIANRPHEHFLVNIESFQALQTLSQGLLQTVCVSME
NQRMALIPKFSDIFFLVDSNMIQADFQLVRTLLMRLVNQLNPSTKTMRLGLAQFAQDTKV
EFLLNSHNTKEEYLAALRKFRLPLRPNRSRHLGDALEYARAHFFTTESGGRNEQGYRQFL
VTVTGGDSKDNVMKVARTIKSEGTTIVSIGLGESTLPELKLMATSPFFYQTTSITSVLKT
VFETEEVVTVTDDCSEASLADIVFIVDESSSNRTANFQLVRGFIHKIVDGLDIDFNRVRV
GIVLYSNKASAQVYLNSFQEKTNILQFIKILPYRRGLTYTGEALEYARENMFIKERGSRK
EQGVQQVAIVITGKSQDNVTSHAAALRRAGVTVYAVGIKDADENELRQIASDPPNKHVLH
VDSFAKLKTLEKSLKKSVCYNILKKAVKDNARTYTAKQSCLQTDEADMFFLIDHSGSIEY
PDFADMKTFINKFINTFHIGPHHVRVGVVKFSNTPALEFDLTTYPDKPSVEKAVDGIIQL
GGGTKTGLALNSMGPHFDRAKATRSNKVREYLIVITDGESEDNVKDQAAKLRAQGITIYA
IGVKLANDTQLLEIAGSQEKKFFVNNFDALKPIKNDIITDICSPDICKDMKGDVLFLIDS
SGSINKPDFQKMKVFMQSIINKSDIGLDKVHVGIIQFSISQQVIFPLNKHNDKEGMLQDL
QTMQQIGGGTHTGKALSYTSQFFDPLKGGRTNVKQFLIVVTDGEAQDEVKSPAKKLQDKG
VIIYAIGVVNANNTQLLEISGAQERVYSERDFDALKALDSQLALAICDPERECVRTEIAD
IIFLVDGSTSISSDNFDIMKNFMMSVVNETSVGEKQTRYGLIVFSDNPESKFTLNEYKSK
RDVNSAITKLREPSGDTYTGKALKYSLGYFGAQYGGRKALNVPQWLMVITDGEATDPYSL
AGPAKELRDNGIIVYSIGVVGANKQELELMAGDTNKVFFVDDFHKLDTLHKNISFEFCQT
SKPVCEKTQGDLVLLIDSSGSISTTDFTIMKKFATDLVSSFNIAEQSFRVGVAQFSSDPK
KEFFLNEYYTEAEVNNQINNMMQIRYTTNIGKALDYVRTEYFQPARGSRINAKVSQNLVV
ITDGRSDDDVVHAAEELKAMNIEVFAIGIGKDHKPVELGQITLNPERVFSVQDFASLDKI
KKKVVDTICSSKVPDTQAGCTIDIAMGFDITHRATAQGLFDGQAQLQAFLPQIIRYVSNL
KGLCCVAGDGSIETNIGFRVVEQDGKVLYDYNFEKYDEKIVEKVMALQTSQTTYFNSFLL
RSFSDKFQKSNAGVKVLVIFSDGLDDDVMKLEQESELLRTKGKGINALLTVALEGVQNAN
LLQMVEFGRGFGYKQPLNIGMHNLGNTLLTQIDTVAERECCNVMCKCTGHEGIRGNRGRP
GTKSQPGLKGHPGFPGEEGGIGERGPPGPTGPQGLQGCSGRRGLKGSRAYRGDRGDDGDH
GLDGVDGEQGLIGTAGAAGERGNPGRPGNSGLIGEPGVKGQRGLRGDPGDSGVDSIVAGP
KGGRGNPGLPGDPGEEGSRAESGIVGNPGPQGRRGLPGPNGTPGDPGVAGLQGIPGPSGP
QGIRGDLGQPGPRGLQGLPGPQGTPGTMGGKGSTGRRGINGQKGQPGDLGVNGALGTLGP
TGMPGLDGSDGHGPPGPQGMKGESGFHGYPGLQGESGDFGVKGGPGSKGNRGRGGNSGRS
GESGDPGSIGPPGHTGSRGRPGERAMSECQLTTYIRDNCACSQGQAACPAYPTELVFALD
MSQDVEPATFERMRSALLSILDDVAIAESNCPTGARVAVVSYSANTKYLIRFQDYQRKPE
LLEAIQNIALERTSNQRHLGEAMHFVGRHVFKRTRKALTMRKVAVFFTNGPSVDSAAIVT
AAMEFKALNIAPAVIAMRNSPDVQRAFEADDTGSFILVRLVDRSQDQNAVLTRIKNCVIC
YDHCKPAQGCDFTDAQRPLVVDMDLILVVDGSREIRADQYAGVQELLGSVVKQVAWSPKP
SVADGRARVALLQTSGSLLPQTSQAVKVEFDLQKYHNHIGLQTHLRSMQQQGGVSSLGQT
LEYALSKVFLKATRPRKSRVVLAVVGAETAHWDQAKLAYISQKAKCQGVSLFVIAVGDHY
NSTQVEELASTPSEQHLLHLWHVKEWERGYAQRFFRAFLRVLSKGRNSYPPAHLKLKCEL
MLGQEHGQGQGQAEWDVWKEEEEYTDEEEFLEHTGVFPTQIALDQVDTIHAFSRGDGAPS
PPRPQPNSNDHTTLLRTEESTVLNQDACFFKQDKGGCENYTLKWYFDTTQSECSRFWYGG
CGGNGNRFETEEACEGLCLRRNSTHVKP
NT seq
8187 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacacagggcctcttggccatcttcaccatagcaacatgttttctggttaac
ggagcacaaaaaacagtctgcaaggaagaggccgtggctgacatcgttttcctggtggac
ggttcatggagcatcggctcagagaacttcaaacagattcgccagttcttgttcacgctg
gttaacagctttgacgtggcccccgaccaggtgcgcatcggtctggtccagtacagcaac
acaccgcgcaccgagttcctcctcaacaccttccaggacaaacaggacatcctgcagtac
attacaaacctgcgttatatgggtggtgaaaccaacacgggtctgggcctggacttcctg
ctgaacgagctctttgttgaccgcgcagggagccgggtgaatgagaacgtgccccagatc
ggcgtggtcatcactgacggtgaatcaatggacaatgtggggctgcatgcccttaagctg
aagaagcagggcgtcacgctgtacgccattgggatcaaagaagcagacgaagatcagctg
aaggagattgccactacacctcacaaccaccacgtgtacagcgtgtcggactttgctgcg
ctgcaggggatctcccagagcctcatccaggtgctatgtactaccgtagatgaggcaaag
agaccaatatccaaagtggtacaagagtgcctcaacgccacagtggcagacattgtgttc
cttgtggatggctccaccagcatcagccctacaaacttccaggaggttcggaggtttctc
cacagcttcatcgaggggcttgatatcggagcggacaaggttcgcgtaggactggcccag
ttcagtaatgagatccagaagcaattccatttgggggaacatacggaccaaagggcccta
ctggagcaagtggacaggcttccacagctcgggggaggcacagccaccggtaaagccatt
actgtcctccgggaagagtttttcaccaaggccaacggtagccgcgctgatcagagggtg
cctcagattgctgtggtgctcaccgacggggagtctgcggacaacataacgctgccagcc
aaggcgctaaggcagcaaggggtcattgtgtttgctattggagttggggcagccaacatc
aacgagctgaagtatatcgctaacaggccccatgagcatttcctggtcaacatagaaagt
ttccaggccctacaaacactttctcagggtctgctgcagactgtctgtgtctccatggag
aaccagaggatggctctaatcccaaaattctctgatatcttcttcctggtggacagcaat
atgatacaggcagacttccaactggtcagaacccttctgatgcgactggtcaaccaactc
aacccgagcactaaaacgatgcgcctgggtctggcccagtttgcccaggacaccaaggtg
gagttcttactgaacagccacaacaccaaggaagagtacttggcagctcttaggaaattc
aggctgccgctgcgtcccaacaggtctcgtcacctgggcgatgccctggaatatgcccgt
gcacacttcttcaccacagagtctggtggccgtaatgaacaaggctaccggcagtttcta
gtcacggtgacagggggggattcgaaggataatgtgatgaaggtggcacgtactatcaaa
tctgaagggacaaccattgtgtctatcgggttgggtgaatctacacttccagagctaaag
ttaatggccacctcgccattcttttaccagactacatccatcacctctgtgctaaagact
gtctttgagactgaagaggtggtcactgtgactgatgattgcagtgaagcttcactggct
gacattgtgtttatagttgatgagtcttcgagcaatagaactgcaaacttccagctggtt
cgtggattcatccacaagatagtagacggcctagatatagacttcaacagggtgagggtg
ggcatcgtcctctatagcaacaaggcctcggcccaggtctacctcaactccttccaagaa
aaaacaaatatccttcagttcatcaagatcctgccctaccgtcgcggtctcacatacact
ggcgaggccctggagtatgccagggagaatatgtttatcaaggagaggggcagccggaaa
gaacagggggtgcagcaggtggcgatagttatcaccggaaagtcccaggacaacgtaact
tctcatgccgctgcactgcgcagagctggcgtcactgtctatgcagtggggatcaaggat
gctgacgagaacgagctgagacagatcgcttcagatccccctaacaagcacgtattgcat
gtggacagctttgccaagctcaagacactggagaagagcctgaagaagagcgtgtgctac
aacatccttaaaaaagcagtcaaagacaatgcaaggacgtacactgccaagcaaagctgt
ttgcagacagatgaagcagacatgttcttcctgattgaccactcagggagtattgaatat
ccagactttgctgacatgaagacatttattaacaaattcataaacacattccacatcgga
ccgcatcatgtccgcgtgggtgtggtaaagttctctaatacaccagctcttgagtttgat
ttgacaacctaccccgacaaaccttcagtggagaaagcagtggatggtatcatccaactt
ggaggcgggacaaagaccggattagcgctgaactctatgggtccccactttgatcgggct
aaggccacccgtagtaacaaagttcgcgagtacctcattgtcatcacagacggagagtct
gaagacaacgtgaaggatcaagcagcaaagctgagggcgcagggcatcaccatatatgcc
attggggtgaagctagctaacgatacacagctgctggagattgctggcagccaagagaag
aagttctttgtcaacaactttgacgctctgaaaccaataaaaaatgacatcatcacagat
atctgctcccctgatatttgcaaggacatgaagggggacgtcctcttcttgatcgacagc
tcaggtagcatcaacaaaccagacttccagaagatgaaggtcttcatgcaatccatcatc
aacaaatctgacataggcctggataaagtgcacgtgggcatcatacagttcagcatcagc
caacaggtgatcttccctctcaacaagcataatgataaggaaggcatgttgcaggattta
caaacgatgcaacagataggcgggggcacacacaccggcaaagccctgtcctacacctcg
cagttctttgacccactaaaaggagggcgcactaacgtgaagcagttcctgattgtcgta
accgatggtgaggcgcaggatgaggtaaagtctcctgccaagaaacttcaagacaagggt
gtgatcatctacgctattggggtggtcaatgccaacaatacacaattactggagatcagt
ggcgcacaggagagggtctactccgagagggactttgatgcactcaaggctttggatagc
caactggcattggcaatctgtgatccggagagagagtgtgtgaggacggagatcgcagac
attattttcttggtggacggctccaccagcatcagctcagataattttgacataatgaaa
aacttcatgatgtccgtggtcaatgaaacctctgttggggagaagcagacacgctatggt
ctgattgtcttttcagacaaccccgagtctaaattcacactcaacgaatacaaatctaag
cgagacgtcaatagtgccatcacaaagcttagagagcccagtggagacacctacactgga
aaggcactcaagtattccttgggttattttggtgcacagtacggcgggcgaaaggcccta
aatgttccccagtggttgatggtgatcacagatggtgaggctactgacccctatagccta
gctgggccagccaaggagctacgggacaatgggatcatagtctatagcatcggagtggtt
ggagcaaataagcaagagcttgagctcatggcaggggacacgaataaggttttctttgtg
gatgacttccataaactagacacactgcacaaaaatatttcctttgaattctgccaaacc
agcaaaccagtctgtgaaaaaacgcagggggatctggtcctgttgattgacagctcaggg
agcatcagcaccaccgacttcactatcatgaagaagtttgccacagaccttgtttccagc
ttcaacattgcagagcagtccttccgggtgggagtcgcccagttcagcagtgatcctaaa
aaggagttcttcttgaatgagtattacacagaagcagaggtgaacaaccagataaacaat
atgatgcagattaggtacacaacgaacatcggaaaggccctggactacgtccgtacagag
tacttccaaccagctagagggagccgtatcaatgccaaggtctctcagaacctggttgtg
atcactgacggacgttcagatgatgatgttgttcatgcagcagaggagctcaaggccatg
aacattgaggtgtttgccatcggtatcgggaaagaccacaaacctgttgagcttgggcaa
atcactctcaacccggaaagggtcttctctgtacaggactttgccagcctggacaagatc
aagaagaaggtggtggatactatctgctcctccaaggtaccagacactcaagcgggctgc
accatagacatcgccatggggttcgatattacacacagggccaccgcccaggggctcttc
gatggccaagcccagctacaggccttcctgccacagatcatccgctatgtgtccaacctg
aagggcctgtgctgcgtggcgggagatggttccattgagactaacattggcttccgcgtg
gtggagcaggacggaaaggttctctacgactacaacttcgagaagtacgatgagaaaatt
gtggagaaggttatggccctgcagacctcccagacaacatacttcaactccttcctcctg
cgctccttcagtgataagttccagaaatctaatgctggcgtcaaggtgctggtgatcttc
tcagacggactcgatgatgacgtgatgaaactggagcaagagtcggaacttctccgcact
aaaggaaaaggtatcaacgccctgcttacagtcgccttagaaggggtccaaaatgccaac
cttcttcagatggtggagtttgggcgaggatttggctacaagcagccgctcaacattggc
atgcacaatttaggaaacaccctgttgacacaaatagacacagtggctgagagggagtgc
tgcaatgtgatgtgtaagtgcaccggacatgagggtatccgtggcaacagaggacgccca
gggacaaagagtcagccaggactgaaaggacatcctggcttccctggcgaggagggggga
attggcgagagaggtccaccaggtcccactggcccacagggactacagggctgttctggg
aggagaggcctcaagggctcaagagcctacagaggggacaggggtgatgatggagaccat
ggccttgatggggttgatggtgaacagggtctgattggaacagctggagctgcaggagag
agaggaaacccaggaagaccaggcaacagcggtctcataggagagccaggagtgaagggg
cagcgtggactgagaggtgaccctggagactctggagtggacagcattgtcgcgggtccc
aaaggaggaaggggaaatccaggactaccgggagacccaggagaagagggcagtcgagca
gaaagtggaatcgttggaaacccaggtcctcaaggaagaagaggtctccctggtccaaat
ggaacaccaggggatccaggagtagcaggcctccaaggaattcctggcccttctggacca
cagggtataagaggagacttgggccagcccggacccaggggcctgcagggtttacctgga
cctcaggggacacctggaaccatgggtggcaaaggatcaacaggaagacgagggataaat
ggacagaagggccaacctggggacctcggagtcaacggagcccttggaacacttgggcca
acagggatgccgggtcttgatggcagtgacggccacgggcctcccggaccccagggaatg
aagggagagtctggtttccatggttaccctggattacagggtgaaagtggtgattttgga
gtcaaaggaggtccaggctccaaaggaaaccgaggcagaggggggaactcgggcagatcg
ggtgagtcaggagatcccggatccattggaccaccgggacacactggctctagaggcaga
ccaggagagagagccatgtctgaatgccagctgacaacctatatccgtgataactgtgca
tgctctcaaggccaggcagcgtgcccagcctaccccacagagctggtctttgctctggat
atgtcacaggatgtggagcctgccacttttgagaggatgcgctccgctctcctctccata
ttggatgacgttgccatcgccgagagcaactgcccgacaggtgcacgtgttgctgtggta
tcctatagtgccaacaccaagtacctgatccgattccaggactaccaacgcaagccggag
ttgttggaggccatccaaaacattgcattggaacgaacgtccaaccagcgccatcttggg
gaggccatgcactttgtggggcgccatgtcttcaagcgaacccgtaaagcgttgacgatg
aggaaggtggcagtgttcttcaccaacgggccctctgtggacagcgctgccatcgtcacg
gccgccatggagttcaaggccctgaacatcgctcctgctgtcatcgccatgaggaactcc
cccgatgttcaacgggcttttgaggctgatgacacgggcagcttcatccttgttcggctg
gtggataggtcacaggaccaaaatgctgtgctgacaagaataaaaaattgcgtcatctgc
tacgaccactgtaaaccagcccaggggtgtgattttactgacgctcagcggcccctggtg
gtggatatggacctgatcctggtggtggacggttcaagggagatccgggccgatcagtac
gctggcgtccaggagcttctaggctcagtggtgaagcaggtagcctggagccccaaaccc
agcgtggctgacggccgggccagagtggcccttctccagaccagtggttctctgctcccc
cagacttcccaggctgtcaaggtagagtttgacctgcagaagtaccacaaccacattggt
ctacagacacacctgaggagcatgcagcagcagggaggagtgtcgtctctggggcagacc
ctggagtacgctctgagcaaggtgttcctcaaggccaccaggcccaggaagagtagagtg
gtgctggctgtggtgggggccgagacagcccactgggaccaggccaagctggcctacatt
tcccagaaggccaagtgtcagggcgtttccctgtttgtgatcgcggtgggcgaccattac
aacagcacccaggtggaggagttggcgagcacgccgtcagagcagcacctgctccatctg
tggcacgtgaaggagtgggagagaggctacgcacagcgcttcttcagagccttcctcagg
gtcctcagtaagggaaggaacagctaccctcctgcccatctcaaactcaagtgtgagctg
atgctgggacaggaacacggacagggacaaggacaggccgagtgggatgtgtggaaagag
gaagaggagtacacagatgaggaggagttcctggagcacactggtgtatttccgactcag
atagctcttgaccaggttgacactatacatgccttctccaggggagatggagccccttca
ccgccccggccacagccaaactctaatgatcacacaaccctcctgaggacagaggaaagt
acagttcttaaccaggatgcatgtttcttcaaacaggacaagggaggttgtgagaactac
actctgaagtggtacttcgacacgacacagagcgagtgctcccgtttctggtatggcggc
tgtggcggcaacggtaaccgcttcgagacggaggaggcttgcgaaggcctctgtctgagg
aggaactccacacatgtaaaaccctga
DBGET
integrated database retrieval system
