Oncorhynchus masou masou (cherry salmon): 135531221
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Entry
135531221 CDS
T10723
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135531221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135531221
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
135531221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
TDP-43_C
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
135531221
NCBI-ProteinID:
XP_064815414
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MAELYIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPVSQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRSIEKTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKAGPDEPMRSRKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGAFGGQGYGGGRGGIGSSGSSGVN
FGGLSLNPAMMAAALQSSWGMMGMLANQQGQTNSAGTAAAGQTSATRDQSQAYSSNSTSY
SSPSSASLGWAAGTNSASGSGFSSGFGTSMESKSSGWGM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcagagttgtacattcgcgtggcagaggatgaaaacgaagagccaatggagatccca
tcggaggatgatgggactgttttgctgtcaacggttgcagcccagtttccaggagcgtgc
ggcctacgttacaggaaccctgtgtctcagtgcatgcgaggcgtccgtctagttgaggga
atcttgcatgcacctgagaatgactggggtagtctggtgtacgtcgtcaactacccaaaa
gataacaaaaggaaaatggatgaaatggatgctgcctctgcggttaaaatgaagaggagt
atcgagaaaacatcagacctcattatccttggtttgccttggaaaacgtctgagcaagat
ttgaaagactacttcgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtt
aagactgggaactcaaagggttttggttttgttcggttcactgagtacgagactcaatcc
aaagtgatttctcagcgacacatgattgacggaagatggtgtgactgcaaactacccaac
tctaaggcaggtcccgatgagcctatgcgcagccgtaaaatatttgttggccgctgcaca
gaggacataaccactgatgagctccggcagttcttcatgcagtatggcgaggtcactgac
gtcttcattcccaaacccttccgggctttcgcctttgtgactttcgcagatgaccaggtt
gcttcagccctgtgcggagaggacctgatcatcaagggtgtcagcgtgcacatctctaac
gctgagcctaagcacaataatagtaggcaaatgatggatcgtggggctggtgcgttcggg
ggccagggctatggcggtggtcgtggagggatagggagcagtggcagtagcggggtgaat
ttcggggggcttagccttaacccagccatgatggcagccgctctgcagagcagctggggg
atgatgggtatgcttgcaaaccagcagggtcagaccaattcggcaggcaccgccgctgcc
gggcagaccagtgccacccgagatcagagccaggcctatagttctaatagcaccagttac
agcagtcccagctcagctagcctagggtgggctgcaggcaccaactctgcctccggcagt
gggttcagctctggatttggcacctctatggagtcaaaatcatcaggttggggaatgtag
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