Oncorhynchus mykiss (rainbow trout): 110491896
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Entry
110491896 CDS
T07259
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110491896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110491896
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110491896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP43_N
TDP-43_C
RRM_1
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
110491896
NCBI-ProteinID:
XP_021421395
Ensembl:
ENSOMYG00000018103
LinkDB
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Position
16:complement(37622833..37634876)
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AA seq
399 aa
AA seq
DB search
MAELYIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPVSQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRSIEKTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKAGPDEPMRSRKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGAFGGQGYGGGRGGIGSSGSSGVN
FGGLSLNPAMMAAALQSSWGMMGMLANQQGQTNSAGTAAAGQTSATRDQSQAYSSNSTSY
SSPSSASLGWAAGTNSASGSGFSSGFGTSMESKSSGWGM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcagagttgtacattcgcgtggcagaggacgaaaacgaagagccaatggagatccca
tcggaggatgatgggactgttttgctgtcaacggttgcagcccagtttcccggagcgtgc
ggcctacgttacaggaaccctgtgtctcagtgcatgcgaggcgtccgtctagttgagggt
atcttgcatgcacctgagaatgactggggtagcctggtgtacgtcgtcaactacccaaaa
gataacaaaaggaaaatggatgaaatggatgctgcctctgcggttaaaatgaagaggagt
atcgagaaaacatcagacctcattatccttggtttgccttggaaaacgtctgagcaagat
ttgaaagactacttcgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtt
aagactgggaactcaaagggttttggttttgttcggttcactgagtacgagactcaatcc
aaagtgatttctcagcgacacatgattgacggaagatggtgtgactgcaaactacccaac
tctaaggcaggtcccgatgagcccatgcgcagccgtaaaatctttgttggccgctgcaca
gaggacataaccactgatgagctccggcagttcttcatgcagtatggcgaggtcactgat
gtcttcattcccaaacccttccgggctttcgcctttgtgactttcgcagatgaccaggtt
gcttcagccctgtgcggagaggacctgatcatcaagggtgtcagcgtgcacatctctaac
gctgagcctaagcacaataatagtaggcaaatgatggatcgtggggctggtgcgttcggg
ggccagggctatggcggtggtcgtggagggatagggagcagtggcagtagcggggtgaat
ttcggggggcttagccttaacccagccatgatggccgccgctctgcagagcagctggggc
atgatgggtatgcttgctaaccagcagggtcagaccaattcggcaggcaccgccgctgcc
gggcagaccagtgccacccgagatcagagccaggcctatagttctaatagcaccagttac
agcagccccagctcagctagcctagggtgggctgcaggcaccaactctgcctccggcagt
gggttcagctccggatttggcacctctatggagtcaaaatcatcaggttggggaatgtag
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