KEGG   Oncorhynchus mykiss (rainbow trout): 110491896
Entry
110491896         CDS       T07259                                 
Name
(RefSeq) TAR DNA-binding protein 43
  KO
K23600  TAR DNA-binding protein 43
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110491896
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omy03019]
    110491896
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     110491896
SSDB
Motif
Pfam: TDP43_N TDP-43_C RRM_1 RRM_7 RRM_3
Other DBs
NCBI-GeneID: 110491896
NCBI-ProteinID: XP_021421395
Ensembl: ENSOMYG00000018103
LinkDB
Position
16:complement(37622833..37634876)
AA seq 399 aa
MAELYIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPVSQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRSIEKTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKAGPDEPMRSRKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGAFGGQGYGGGRGGIGSSGSSGVN
FGGLSLNPAMMAAALQSSWGMMGMLANQQGQTNSAGTAAAGQTSATRDQSQAYSSNSTSY
SSPSSASLGWAAGTNSASGSGFSSGFGTSMESKSSGWGM
NT seq 1200 nt   +upstreamnt  +downstreamnt
atggcagagttgtacattcgcgtggcagaggacgaaaacgaagagccaatggagatccca
tcggaggatgatgggactgttttgctgtcaacggttgcagcccagtttcccggagcgtgc
ggcctacgttacaggaaccctgtgtctcagtgcatgcgaggcgtccgtctagttgagggt
atcttgcatgcacctgagaatgactggggtagcctggtgtacgtcgtcaactacccaaaa
gataacaaaaggaaaatggatgaaatggatgctgcctctgcggttaaaatgaagaggagt
atcgagaaaacatcagacctcattatccttggtttgccttggaaaacgtctgagcaagat
ttgaaagactacttcgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtt
aagactgggaactcaaagggttttggttttgttcggttcactgagtacgagactcaatcc
aaagtgatttctcagcgacacatgattgacggaagatggtgtgactgcaaactacccaac
tctaaggcaggtcccgatgagcccatgcgcagccgtaaaatctttgttggccgctgcaca
gaggacataaccactgatgagctccggcagttcttcatgcagtatggcgaggtcactgat
gtcttcattcccaaacccttccgggctttcgcctttgtgactttcgcagatgaccaggtt
gcttcagccctgtgcggagaggacctgatcatcaagggtgtcagcgtgcacatctctaac
gctgagcctaagcacaataatagtaggcaaatgatggatcgtggggctggtgcgttcggg
ggccagggctatggcggtggtcgtggagggatagggagcagtggcagtagcggggtgaat
ttcggggggcttagccttaacccagccatgatggccgccgctctgcagagcagctggggc
atgatgggtatgcttgctaaccagcagggtcagaccaattcggcaggcaccgccgctgcc
gggcagaccagtgccacccgagatcagagccaggcctatagttctaatagcaccagttac
agcagccccagctcagctagcctagggtgggctgcaggcaccaactctgcctccggcagt
gggttcagctccggatttggcacctctatggagtcaaaatcatcaggttggggaatgtag

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