Oncorhynchus mykiss (rainbow trout): 110505057
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Entry
110505057 CDS
T07259
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03020
RNA polymerase
omy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110505057 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
110505057 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110505057 (polr2b)
03400 DNA repair and recombination proteins [BR:
omy03400
]
110505057 (polr2b)
Enzymes [BR:
omy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110505057 (polr2b)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110505057 (polr2b)
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110505057 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
110505057
NCBI-ProteinID:
XP_036826152
Ensembl:
ENSOMYG00000022919
LinkDB
All DBs
Position
31:complement(33613850..33629271)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatattcaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctattttgatgagaagggcctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtgcagaggatcgtggag
gatgccccgcccattgacctgcaggctgaggcccagcacacctctggtgaggtggaggat
ccgccacgctacttgctgaagtttgagcagatctacctttcaaaacccactcactgggaa
agagatggagccccgtcgcctatgatgcccaacgaggccagactcaggaaccttacgtac
tctgctccactgtacgtggacatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgcctgctcagcggcctgacagaccgtgatctgtgtgagctcaacgagtgcccactggac
cccgggggctacttcatcatcaatgggtcagagaaggtcctgatcgcccaggagaagatg
gccacgaacacagtgtacgtcttcgccaagaaggactcaaagtatgcgtacacaggggag
tgccgctcctgcctggaaaactcctcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaagtgcccatcatcatagtgttccgagccctgggctttgtgtcc
gacagagacatcctggagcacatcatctatgactttgacgaccctgagatgatggagatg
gtcaaaccatccctggacgaggcctttgtgatccaggagcagaacgtggcgctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaggagaggaggatcaagtacgccaaa
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacagactcctattagcggccctgggcagaaga
gagctggacgacagggatcactatggcaacaagagactagacttggctggaccgctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatctacgcccaa
aagtttattgaccgagggaaggacttcaacctggagttggccatcaagacacgaatcatc
tccgacggcctgaagtactctctggccacagggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgctgaaccgcttgaccttcgcctccaccctctct
caccttcgtcgtgtgaactcccccatcggtagggacggcaagctagccaagccccggcag
cttcacaacacgctgtggggcatggtgtgccctgctgagaccccagagggtcatgctgta
ggcctagtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
attgcggatgccacaaagatctttgtcaatggctgttgggtgggcatacacaaagaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacggacgccgggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacactctggaggaggagactgtaatgctggccatgacccctgac
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacataccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccacgtgctctactacccccaaaaacccttagtcacc
acccgctctatggagtacctacgtttcagagagctccctgcaggtatcaactcgattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagagcaggagtcaaag
aaaggcttcgatcaggaggaaatctttgaaaaacccacacgcgaaacctgttcgggcatg
aggcacgccatttacgacaagctggacgacgacggcttgatagctcccggagtgcgtgtc
tccggcgaggacgtcatcatcggcaagacggtgaccctgccggagaacgacgatgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttctgcaag
attagggttcgctctgttcgtatcccccagatcggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccacgccatcccctctcgtatgacagtcggccat
ttgatcgagtgcctgcagggcaaggtttcagccaacaaaggggagattggtgacgccacg
cctttcaacgatgcggtcaatgtgcagaaagtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggcttcaccggccgtaagattacctctcag
atcttcctcgggcccacatactaccagcgcctgaagcacatggtggacgataagatccac
tctcgggcccgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gacggaggtcttcgttttggggagatggagcgcgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtccgacccctaccaggtccacgtctgcaac
ctatgtggcctcatggccatcgccaacacccgcacccacacctacgagtgcaggggctgt
cgcaacaaaacacagatctccctggtcagaatgccgtacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgtatgatgaccagttag
DBGET
integrated database retrieval system
