KEGG   Oncorhynchus mykiss (rainbow trout): 110525567
Entry
110525567         CDS       T07259                                 
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110525567
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:omy03041]
    110525567
Spliceosome [BR:omy03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    110525567
 Complex B
    110525567
 Complex C
   U2 SnRNP specific factors
    110525567
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 110525567
NCBI-ProteinID: XP_021461458
Ensembl: ENSOMYG00000028723
LinkDB
Position
6:complement(24032069..24041920)
AA seq 787 aa
MPPGPVQMVQLEPNNRADESTEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLP
QKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLIKLKRESENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEEDDEREERDDGRPTQPDQDTQLQDMDEGSDDEEDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHQSPLISSAPLLPKPSPPMNTMARAPPSMLPPVRTTLLSAVPVIPRPPMAPVQ
MRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTSFVPAPPVPQPPRPDP
QPPSHPPPRHDDEPATKKMKTEDNLIPEEDFLRIYKGSVSVKVQVPNMQDKTEWKLSGQA
LNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALK
ERGGRKK
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgtacaaatggttcaactggagcccaacaacagggcagatgagtca
acagaggaaaccccagcaacaaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacatcgtcgacaagactgccagttttgtagccaggaatggaccagagttcgaggca
aggatccgtcagaatgagatcaacaacccaaagtttaacttcctgaaccctaacgaccca
taccatgcttactaccgccacaaagtcaatgaattcaaggagggcaagggccaggagccg
tctgcggccgtaccaaaggtcatgcagcagcaggccctgcagaactcacagcagcttcct
caaaaggtgcaggctcaagtgattcatgagacagtggtgccaaaggagcctccacctgag
tttgagttcattgctgaccctccttcaatctcagcattcgacctggatgttgtcaagctg
accgcccagtttgttgctcgcaacgggcgccagttcctcacacagctcatgcagaaagaa
cagcgaaactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggacttctgataaagctg
aaaagagagtctgagaaccccagggaggtgctggaccaggtgaggtaccgtgttgaatgg
gcgaagttccaggaacgtgaaaggaagaaggaggaggaggagcgggagaaagaacgtgtg
tcctacgcccaaattgactggcatgactttgtagtggtggagaccgtggactttcagcct
aatgaacaaggccacttccccccacccaccacacctgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagtgaggaggtggagatggaggttgaaagt
gaggatgaggaggacgatgagcgggaggagcgggatgatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgatgaggaagatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccccctactccagaccaggtcatt
atccgcaaggactatgaccccaaagcctccaagccacagcctccagccaagactctggat
gagtacctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcac
atgcgcattgggctactggatccccgctggctggagcagagggaccggggcatcagagag
aggcaaatcgaggacgaggtttacgcccctggcatggacattgagagcagcctgaaacag
ttggctgagaggcgtactgatatctttggcgtggaggagacagccatcggtaagaagatt
ggagaagaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagc
atggcacgtactcagcaagcagcacaggccaacatcaccctacaggagcagattgaggcc
attcacaaggccaagggactggtgcaggaggatgaaagcaaagagaagattggaccgagc
aagcctgagctttaccatcatcatcaatcacccctcatctcctctgccccccttctgccc
aaacccagccctccaatgaacacgatggctcgggcccctccttccatgctgccccctgta
cgcaccactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtgcag
atgcgcctggccccagggcaggttctaacacccatgcctcccatgatgcatgctccccgc
atcaacgtggtacccatgccccaaccacctcacatgatggcccccagaccaccccccatg
gtggtaccaacttcatttgtccctgcccctcctgtcccgcagcccccccgccctgaccct
cagccaccttcccacccacccccacgccatgatgatgagcctgccaccaagaagatgaag
acagaggacaaccttataccagaggaggatttcctccgcatatacaagggttcggtgtcg
gtcaaagtacaagttcccaacatgcaggacaagacggaatggaagctaagtggacaagcg
ctcaacttcactgtcccactcacagatcaggtatctgttattaaagtcaaaatccatgaa
gccactggcatgccagctggaaaacaaaagctacagtatgagggaattttcatcaaagat
tccaactcgctggcctactacaacatgaacaacggttcagtcatacacctggcactgaag
gagagaggtgggagaaagaagtga

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