Oncorhynchus mykiss (rainbow trout): 110531729
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Entry
110531729 CDS
T07259
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy02010
ABC transporters
omy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110531729
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110531729
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
omy02000
]
110531729
Transporters [BR:
omy02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110531729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DrrA1-3_C
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
110531729
NCBI-ProteinID:
XP_021470746
Ensembl:
ENSOMYG00000012761
LinkDB
All DBs
Position
9:complement(20633242..20860765)
Genome browser
AA seq
2254 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTSQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCVNHSTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSILT
KIQTLSDDVDQWVLILPTSNREKGQPIPLRSILNDNEMFTTYLRENLSLSSTVADGLITS
NIRLNEMMGISRQDDLRITLCSGTALDRYVEFTSAFDKEAFQKVSCSLTAQQLRQTREVF
LQNLDPRKMLTNLPSALDLAPSETFGLVRKTTEDAFTVIDEMNKLQNSMLFKAADRLDFR
ADAFGSLNILLCGKVSNSNSTKTTMNFPAFGAMRNDTENKARSSNSSAFCKVLIDTLEGT
PGLRIVWRTFRPLIQGKILYTPDTPATRLMVKEANRTFNALAMLKELLEAWEDFEPRGWN
YFQNGPQVSALRAFLDNPAFAAALNHGLEGTRWTEELLANFLYNGPPEDRPAGMPPNDWR
DVFNTTRQILDLLKKFIGCLDLDKFEAVDSEGHLVARALELLENDTYWAGIVFEDLDPAA
SHPPPYVKYKIRLDIDEGESTNKIKERGWSPGARDSFNNLRYIWGGFAYLQDMMDHGIIR
VHTNKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMTIKGLVLEKELR
LKEVQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFVFLLVFC
VATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMGFQVKIAVSLLSCVA
FGYGCENFAKYEEQGIGIQWSNIAQNPEDGDRYSFIVSIIMMLVDSLIYWLLTWYIENVF
PGQYGIAKPWYFPFTASHWCGTSPVPNDDPSQFKDPIEYTGYLEKPPLNMKAGVSIRNLV
KIYKTGKKLAVDGLTVDFFENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYDIR
SDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSRDEVKTEIDQMIEDVGLPHKR
KEFAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWDLLLKYKQGRTIIL
STHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDGQMTNQCTGVE
QRQVKEETGESLRRTSLVEGIARQNWSNSEPTDVSKVVCRHVPEAVFLESIGQEITYILP
YGGAKDGTFALLFKELDLKMADIGVTNYGISDTTLEEIFLKVAEDTGVDAEIPAINAALV
RDKTRSSRESKRQRQSLTKVGDTSDEMPGKSAEDEMKVKFTSRVEDVERVANVNGKGSSV
ITGWELIRRQFLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYPNLE
LQPWMYGLPQTTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKW
FTPSVDPSISNIFVNGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDT
LQDMTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLRSLLNSSQD
NTTDQMLLNTEMLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREY
GISSSSHPLNLTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHL
QFVSGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLSNLPALILLLMMYGW
SITPMMYPASFIFNVPSTAYVVLTCINLFIGINGSVATFVMELFADDNITKINGIVKQVL
LIFPHFCLGRGLIDMGKNQAMATLYDSFGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTIT
LLIQYKFCCKSRLISGESFSKEDEDVDVARERARIHKGGSEKDLLRICDLSKVYSGKKIP
AVDRVCVGVPAAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDVHQN
MGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVPMVAEWGIQKLGLVKYSNKSAGTYSG
GNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEEC
EALCTRMAIMVNGQFKCLGSIQHLKSRFGEGYTVIVRVGGSPPALGPVEEFVHESFPGSI
LKEKHHNTLQYQLPHSEGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEE
DNQALQAYDNKVDVSDEMPMETRISTDSTVPERV
NT seq
6765 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagctgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccagccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttccgccggggtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgtaaaccattccacgccaggagaagcaccgggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagttacagtcacttctggcgaacagatccatcttaacc
aagatccagacgctttccgatgatgtggaccagtgggttttgattctaccgacatctaac
cgtgaaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggaaaacttgtccctgtcatcgacggtagccgacggtctgattacctca
aatattcgcctgaatgagatgatgggcatttcaaggcaagacgatctgaggatcaccctt
tgcagtggaacagctcttgatagatacgtggaattcaccagcgcctttgacaaggaggcc
tttcagaaagtcagctgctccctcacagcacagcagctgagacaaaccagagaagttttc
ctacaaaacctggatccaaggaaaatgctcaccaatctaccttcagctttggatttggct
ccgtccgagacctttggattagtgagaaaaactacagaggatgccttcaccgtgattgat
gagatgaacaagttgcagaactcaatgttgttcaaggccgctgataggctggatttcaga
gcagatgcatttggcagtctgaacatcctactttgtggtaaagtatcaaactccaactcc
acaaagaccaccatgaatttccctgcttttggagcgatgaggaatgacacagaaaacaag
gccaggagcagcaattccagtgccttctgcaaagtactgattgacactcttgagggaact
cctggcctacgtattgtttggaggacatttcggcccctaatccaagggaagatcctctac
acccctgacacacctgcaactagactaatggtgaaagaggcaaataggactttcaacgca
ttggccatgttgaaagagttgttggaagcttgggaggattttgaaccacgtggttggaac
tactttcaaaatggcccccaagtcagtgcactgcgggcctttctggataacccggcgttt
gcagccgcactcaaccacgggctcgaaggcacgagatggacggaagaactgctcgccaac
ttcctgtacaacgggccccctgaggaccgccccgcgggcatgccgccgaatgactggcgc
gacgtgttcaacaccaccagacaaatcctggacctcctgaagaagttcattgggtgcctg
gacctggataagtttgaggctgttgacagtgagggacatctcgtggctagagccttggag
cttctagaaaacgatacgtactgggctggtatagttttcgaagacctcgaccctgccgcc
agccacccccctccttacgtcaagtacaagatccgcttggacatcgatgagggggagagt
accaataagattaaagaaaggggatggtctcccggggcccgtgactccttcaacaacctg
cgctatatatggggaggcttcgcctatctgcaggacatgatggaccacggcattatacgg
gtgcacacgaacaaatcacagccgctcggcgtgttcgcccagcaaatgccgtatccctgc
tacgtggacgacgtcttcctcgcgagtatcggaaccatgcttcccatgtacctggtgctg
gccttcatgtacaccgtctgcatgaccatcaagggcctcgtcctggagaaggagctcagg
ctcaaggaggttcagcgggccgttggagttcagaacggtgccatttggttcgcgtggttc
accgagaactttgtcctgctcatggtcccatgcgcatttataagtgtcatggttaagtat
gggaaggtgctgcagtacagcgacccctcagtgatcttcgtcttcctgctggtcttctgc
gtggccaccataatggagtgtttcttcatcagcgtcttcttctccaaggccaacctggcg
gcggcgtgcggaggcctcatctacttcgtcctctacctgccgcacctcctctgctatgcc
tggagggacgtcatggggttccaggtcaaaatcgctgtgagtttgctgtcgtgcgtggcc
ttcgggtatggctgtgagaactttgccaagtatgaggagcagggcatcggtattcagtgg
agtaacatcgcccaaaatcctgaagacggagaccggtatagcttcatcgtgtccatcatc
atgatgctagtcgactccctcatctactggctgctcacgtggtacatcgagaacgtcttc
ccaggccagtatggaatagcaaagccgtggtacttcccattcaccgcctcccattggtgt
gggacttcaccggtgcccaatgatgaccccagtcagttcaaggaccccattgaatacacc
ggttatttggaaaagccaccactcaatatgaaggcaggggtctcaatcaggaaccttgta
aagatctataaaactgggaaaaagcttgctgtggatggactaactgtggacttcttcgag
aatcacatcacctctttccttggtcacaatggggcaggaaaaacaaccaccatgtcgatc
ctgacaggactcttcgctccgacgtcggggaccgctctaataaacggttatgatatccgc
tcagacatggacaccattagaaagcatctgggaatgtgccctcagcacaatgtcttattc
aatgacctcacagtggaggaacacatctacttctactccagattaaagggacgaagccga
gatgaagtgaaaacggagattgaccaaatgatcgaggatgtcgggctgccacacaaacgc
aaggaatttgccaagaacctgtcagggggaatgcagaggaaattgtcggtggcaatcgca
ttcgtgggagggtccaacatcgtcatcctggatgaacccacagcgggggtggacccatac
gcccggagggggatatgggacctactgttgaagtacaaacaaggtcgcacaatcatcctc
tccactcatcacatggatgaggccgacatcttgggagaccgcattgccattatctctcac
ggcaagatgtgttgctatggctcctccctgttcttgaagaaatactttggcagtggctac
tacctcactctggtcaaggccggagacgggcaaatgaccaaccagtgcactggagtcgag
cagcgccaggtgaaagaggagactggtgagtcattgaggagaaccagtctggttgaaggg
atcgcacgacagaactggagtaactctgaacccacagatgtcagtaaggtggtgtgtcgg
catgttcccgaggcggtgttcctcgagagcatcggccaggagatcacctacatccttccc
tatggcggggccaaggatggcacctttgcactcctcttcaaagagctggacctcaagatg
gccgacattggtgtcaccaactacggcatctcagataccacactagaggagattttcctc
aaagtggcagaggacacaggtgttgatgcggaaataccagctatcaacgcagctttggta
agagacaagacaagaagttcaagggaatccaagaggcaacggcaaagcctcaccaaagtc
ggggacacttcagacgaaatgcctgggaaaagtgctgaagacgagatgaaagtgaagttc
actagcagagtggaggatgtggagagagtggccaatgtgaatgggaagggctccagtgtg
atcacgggatgggaactgatccggagacagttcctggccctcttcatcaaacgctttcac
cacgcacgcaggagccgcaaaggcctcattgctcaggtgattctgcctgctgtcttcgtc
tgcctgtctctcatcttctccgtcatcgtcccgccttttgcggagtaccccaacctggag
ttgcagccttggatgtatggactgccccaaacgacattctacagcaatgatggaccgcca
aataacacagaggttgctcgggtggcggactctttggtgaataatcctgggtttgggact
cgctgcatggccaacaacccgataccaaatctcccatgtgtcccgaatgattctaagtgg
ttcactccctcagtggatccctctatcagcaacatcttcgtcaacggaaactggagcatg
gccaacccttctcctaactgccagtgcagcactcctcaaaagaccaccatgttgccagat
tgcccacctggagccggtgggctgcctccccctcagaggacccagaataccacagacaca
ctgcaggacatgacggggcggaacatgacagacttccttttaaagacctacaaggaagca
ggcagaaaaaggtatggagggatttctgtcggaggggtcaactcccaagtcaggatgact
gaaccggaaatagaagctgtgatcagggatttgaggagcctattaaattcctcccaggat
aacacaaccgatcagatgctcctgaataccgagatgctcctgaaagagctcgggaccagg
gataatgtcaaggtgtggttctacaaccaggcgtggcacggtattgtatcgttcctcaat
gtggccaacaacgccatcttgagaggcaacctgccgccgggtcatgaccccagggagtat
ggaatctcctcctcaagccaccccctcaacctcaccaaggctcagctttcctaccaggca
atggccgccacctccaccgatgtggtggtgtccatctgtgtcatctttgccatgtccttc
atcccagcaagcttcgtcctcttcctcatccaggagcgtgtcagcaaggccaagcacttg
cagtttgtcagtggcgtcaacccgaccgtctactgggtcgccaacttcgcctgggatatt
tgcaactacatagtcccgtgtctaatagtcatcgtcatcttcctgtgtttccaacaaaaa
gcctacgtgtccctttctaacttaccagctttgattctgctactgatgatgtatgggtgg
tctatcacacccatgatgtacccagcctcgtttatcttcaacgttcccagcacggcctac
gtggtgctgacctgcatcaacctcttcatcggcatcaatgggagcgtggccaccttcgtc
atggagttgttcgctgatgataacatcacgaaaatcaatggtattgtgaagcaggtgctg
ctgatttttccgcacttctgtctgggtcgagggctcatcgacatgggcaagaaccaggct
atggccaccttgtacgatagctttggggaagaccgttaccaggaccccctcagctgggac
atggtggggaagaacctctgtgccatggccatccagggggcagtcatgttcaccatcact
ctccttatccagtataagttctgctgcaaatccagactgatttctggagagtcattctcc
aaggaggacgaagatgtggacgtggcacgggaacgtgcacgcatccataaaggtggctca
gagaaagacctgttgagaatctgcgatctttctaaggtgtactcggggaagaagattcct
gctgtggacagggtgtgcgtgggcgttccagccgcagagtgctttggacttctggggatt
aacggggcaggaaaaaccaccaccttcaagatgctgacgggggacatctccatctccgga
ggggaggccttcctaaacggatacagcatacggacagagatgagggacgttcaccagaac
atgggctactgcccgcagtttgacgccctcaacgaccttctcaccggacgagagcacctg
gagttctacgccagactacgaggcgtaccggagaaagaagtccccatggtggcagagtgg
ggcatccagaagctaggcctggtcaaatactccaacaagtcagccggtacctacagtgga
gggaacaagcgcaagctctccaccgccatggctttgattggctgtcctcctgtggtcttc
ctggatgagccaacaacagggatggaccccaaagccagacgcttcctgtgggactgcatc
ctgagtgtcatcaaagagggacgctcagtcatcctaacatcacacagcatggaggagtgt
gaggccctatgcacgcgcatggccatcatggtgaatggacagttcaagtgtctgggcagc
atccagcatcttaagagcaggttcggagaaggctacactgtgatcgtgagggtgggcggc
tcgccccccgccctgggccccgtggaggagtttgtccacgagtccttccccggtagcata
ctgaaggagaagcaccacaacacgctgcagtaccagctcccccacagtgagggcgctctg
gccagcatctttagccatttcaccactcatcagcagaggctgggtgtggaggactactct
gtctcccagaccactctggatcaggtctttgtcaactttgcgaggtaccaacaggaggag
gacaatcaggccctgcaagcttatgacaacaaagtggacgtgtccgacgaaatgccaatg
gaaactcggatctcaaccgactcaactgtaccagagagagtctga
DBGET
integrated database retrieval system
