KEGG   Oncorhynchus mykiss (rainbow trout): 110535930
Entry
110535930         CDS       T07259                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    110535930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:omy03000]
    110535930
   04121 Ubiquitin system [BR:omy04121]
    110535930
   03036 Chromosome and associated proteins [BR:omy03036]
    110535930
Enzymes [BR:omy01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     110535930
Transcription factors [BR:omy03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    110535930
Ubiquitin system [BR:omy04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     110535930
Chromosome and associated proteins [BR:omy03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    110535930
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     110535930
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like DUF7885 F-box PHD Viral_cys_rich LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 110535930
NCBI-ProteinID: XP_036791657
Ensembl: ENSOMYG00000004978
LinkDB
Position
11:complement(52456437..52478127)
AA seq 778 aa
MALSLSADEEDYESESEQQHAANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGDCHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDSLEEEEDK
FNIMLMECSICSEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGF
KYASNLPGSLLREQKVVKEEGESTSTSTVKRKPERDETPRHRPEEWEPLHRQPPVLSPST
LPRPRPEDKLRKKRKLFDDDYEEDFDVRKKGKSDGHLFLNQIKTEEEEVDEEEKASLYQR
GLERRGRLGDTEEEAEYEDDEDTKTSLPRPPLKTPVLDSDQSHCSSPWAGPSSEGGSEPQ
EKGPRPKACRKRRLPNKELSKELSKALNQEIQKTEDCLANENRQPLKLEPESENEEPKRS
FRNGSDLGGERPHLWTKEINCTPWELRHFYPGQITPLGFNRSSPGTRPLPPRSPPKCVQM
ERHVIRPPPISPPPDRLPLVDGKTHAVQREVWVKIFGHITHKELCVCMRVCKTWNRWCCD
KRLWTIIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVLLLSG
CSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVMDL
RLAGLDITDTSLRLIIRHMPVLSQLDLSYCNHVNDQSVNLLTAAGTTTRDSLTEINLSVC
NRVTDHSLTFFKRCGSICHIDLRYCKQVTKTACEQFIAEMSVSVQFGLKEDKLLQKLG
NT seq 2337 nt   +upstreamnt  +downstreamnt
atggccttgtcactgagtgcagatgaagaggattatgaatcagaatctgaacagcagcat
gcagccaaccggccaaagcccaagatggggacgtcagcagcggtcaagctgccgtcgaat
cgcagtgcgtctggcgccagacgcaggagaacacgctgccgaaagtgtgaggcgtgcctc
cgaaccgagtgtggagactgtcacttctgtaaagacatgaagaagtttggaggaccaggg
cgcatgaagcagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacggct
gtgtgtgttgtgtgtggagaagcaggtaaggaggactccctagaggaagaggaggacaag
ttcaacatcatgctcatggagtgctccatctgcagtgagattgttcaccccaactgctta
aaggttaaagatgcctctggcgtggtgaatgatgaacttcccaactgttgggaatgtccc
aaatgcaactacgctgggaaaacaggcaaagtctgcaagcaaaaaaggggaccagggttc
aagtacgcgtccaacctccctggctctctgctgagggagcagaaggtggtcaaggaggag
ggcgagtccacctctacgtctacagtcaagaggaagcctgagagggatgagactcccaga
cacagacctgaggaatgggagccccttcacagacaaccccctgtcctgtcccctagcacc
ctgcctcggcccagacctgaggacaaactgaggaagaagaggaagctcttcgacgatgac
tatgaagaggactttgatgtgaggaagaagggaaagtcagatggacatctgttccttaat
cagatcaagactgaagaggaggaggtggatgaagaggagaaggcctctctgtaccagcga
ggcctggagaggagagggcgtttaggagataccgaggaggaggcagagtacgaggatgac
gaggacacaaagacaagcctgcccaggcctcctctcaaaactcctgttctagacagtgac
cagtctcactgcagctctccatgggctggccccagtagtgaggggggcagtgaaccccag
gagaagggcccacgtcccaaagcgtgccgcaaacgccgattaccaaacaaagagctgagt
aaagagctgagcaaagcactgaaccaggagatccagaagaccgaggactgccttgccaat
gagaaccgccagcccctgaagttggagccagagagtgagaatgaagagccaaagaggagc
ttccgcaatggcagtgacctaggaggggagcggccacacctctggaccaaggaaattaac
tgcactccctgggagctgcgccacttctaccctggccaaatcacccctctgggcttcaac
aggagctcccctggcacccggcccctgcccccacgctccccacccaagtgtgtccaaatg
gagcgccacgtcatccggccgccccccatcagccccccgccggatagattgcccctggtg
gacgggaaaacccacgcggtgcagcgagaggtctgggtgaagatcttcggacacatcaca
cacaaggagctgtgtgtctgcatgcgtgtctgcaagacatggaaccgatggtgctgtgat
aaaagactgtggaccataatcgatctgaaccgctgtaaatctatcactcccctcatgctg
agtggcatcatccgcagacagcccctctcactggacctcagctggaccaacatctccaag
aagcaactaagctggcttataaaccgcttaccaggtctgcgggtgttgctgctctccggg
tgctcgtgggtggctgtgtctgccctctgcacctctagctgccctctgctgcgcaccctg
gatgtgcagtgggtggaggggctcaaagatgcccagatgagggacctgctctcgcctccg
accgacaacagaccaggccagttggacaaccgttgtaagctgaggaacgttatggacttg
cgtctggccgggctggacatcacagacacctctctgcgtctgattatcagacatatgccg
gtactttcacaactggacctgagctactgcaaccacgtcaacgaccagtcggtcaacctg
ctgacggccgcagggaccacaaccagggactccctcacagagatcaacctgtcagtttgt
aatagggtgacagaccattcccttaccttcttcaagcgctgtggaagcatctgtcacatt
gacctacgctactgcaaacaggtgaccaagacggcctgtgaacagttcatagctgagatg
tctgtaagtgtacagtttggcctcaaagaggacaaattactgcagaaactcggctag

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