Oncorhynchus mykiss (rainbow trout): 110539011
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Entry
110539011 CDS
T07259
Symbol
cacna1aa
Name
(RefSeq) voltage-dependent P/Q-type calcium channel subunit alpha-1A isoform X1
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy04010
MAPK signaling pathway
omy04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110539011 (cacna1aa)
04020 Calcium signaling pathway
110539011 (cacna1aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
omy04040
]
110539011 (cacna1aa)
Ion channels [BR:
omy04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110539011 (cacna1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
110539011
NCBI-ProteinID:
XP_036794759
LinkDB
All DBs
Position
12:complement(84859212..85036879)
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AA seq
2518 aa
AA seq
DB search
MARFENEMPSRYGGGHGHGPGHGHGPGGPGRGGSRQGGPPGGPGGQRVYKQSMAQRARTM
ALYNPIPVRQNCFTVNRSLFIFSEDNFVRKYAKKITEWPPFEWLILATICANCIVLALEQ
HLPDGDKTPLSERLDDTEPYFIGIFCFESGIKILALGFAFHKNSYIRNGWNAMDFVVVCT
GILSTVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILM
FAIIGLEFYMGKFHTTCFDIHTDEIREEVPCGTEAPSRLCPNGTTCRKYWLGPNYGITQF
DNILFAVLTVFQCITMEGWTDLLYYSNDASGSAWNWMYFIPLIIIGSFFMLNLVLGVLSG
EFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILADDEDPDAFDGIFPSTR
RRPTIKNHKNKTDLLNPEDGNGDLALGSPFARASLKSSKLEGSNFHKRERRLRFFIRRIV
KTQYFYWSVLCLVGLNTMCVAVVHYDQPEPLSDFLYFAEFVFLSIFISEMGIKIYGLGSQ
PYFHSSFNCFDCIVICGSIFEVLWGFIQPGTSFGISVLRALRLLRIFKVTKYWASLRNLV
VSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFESGTPSTNFDTFPAAIMTVFQI
LTGEDWNMVMYDGIESQGGVNNGMVFSVFFIVLTLFGNYTLLNVFLAIAVDNLANAQELT
KDEQEEEAASKKNALQKAKEVAEVSPQSVANMSIAAEKVNSTGHNASDPFLDCKEQQKNN
KGGNKSVWEQRTKELRKQTLMTSREALYNELDPEDRWKVNYSRHIRPDMKTHTDRPLVVD
PQENRNNNTNKTTKEPDPRLSQQHADELVRKQTHVHERGGGGSGSGSGPGRPYERADSTE
SRRSRKESKEHQELQHHHSSHTRLDATMLGQSGEERPQRRHHHPRGQVGSSEHRKPRQHR
MPPEDEEGGGGGGGGGGGGGERRHKSRGTEGEGEGEQEGGDGGERRQRRHRHGTQSGCDG
EGKRTRQHRRKDGPNLSTTRPIQKSLCRQDSQYSEDMDNVMNSKLATSQPKLHPGYTQQP
CPASGLPSPANHTTPGPGFGPAGLNTHLTNSSSHLGLDGSLVPAYGSSTRIPDHTAVDIP
PMFPSHNAILQVNKNANTEPLPKKEDKEDDDDEKGDEDGPKPMPPYSSMFILSTTNPFRR
LCHYIVTLKFFEFGILSTIAMSSIALAAEDPVWPESPRNNVLRYFDYVFTGVFTFEMLIK
MVDLGLVLHQGSYFRDLWNILDFIVVSGALVAFAFTSSSGGSSKGKDISTIKSLRVLRVL
RPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVVAVQLFKGRFFYCTDESK
EFERDCRGEYLVYERNNEVKAQKREWKKYDFHYDNVLWALLTLFTVSTGEGWPQVLKHSV
DATYENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEDYSLEKN
ERGCIDFAINAKPLTRHMPKNKQSCQYRMWEFVVSPPFEYTIMAMIALNTIVLMMKYDGA
SPAYEAVLANLNIVFTSLFSMECVLKIIAFGVLNYFKDAWNIFDCVTVLGSITDILVTEL
GMNNFINLSFLRLFRAARLIKLLRQGETIRILLWTFVQSFKALPYVCLLIGMLFFIYAII
GMQLFGNIGMEEEEGSAINEHNNFRTFFQALMLLFRSATGEAWHDIMLSCLGGKLCDPLA
GNTEPECGSQFAYLYFVSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEYVRI
WAEYDQAACGRIHYKDMYSLLRVIDPPLGLGKKCPHRVACKRLLRMDLPVADDNSVHFNS
TLMALIRTALDIKIAKGTEGGVDKHQMDAELRKEMMAIWPNLSQKTLDLLVTPHKSATDL
TVGKIYAAMMIMEYYRQSKAKRSQARLEAEQNRTTLLFQRVEPPSPIQDVPLSLPPTQPA
DPVNTLPVEGGVPESQSWVTVRAQEMSQRVGSWSPEGQHSEDGLDSRHNSQTVEMREMGR
DGYSDTEHFQPMEGHGRAASMPRLPGDNQQRRKGRQRGNNLSTITDNSPMKRSASSLGHS
RSGRGQRERGGGDDYAMEYVIPEEGGAPRHSHRRRDRSHRASERSLCRYTDADTAGLGTD
LSTTTQSGDLPPKEKDRDRDRDRGRQKDRKHHHHHHHHHSGSVDKERYTPDRADRADRGG
EHGGHRQPRGDRDYDRDREHDRRWSRSPSEGRECMTHRQGSSSVSESPAPSTSGTSTPRR
GRRQLPQTPATPRPHVTYSPVVRKAMATPPGAQPLGRNPAPHRFSPEPPQGPSPPHHGSP
NQACHLPPRWGDGGGEGGGGESGSLEGDGCFYNQDYQDYDREHHKPPPYEQSPTQGNPHK
PHPLNHPTLPVLNHPPTPQQQHPINPHPNNPHPNNPHSRTSPRTSRHAPPPNTTPTHQGQ
QPPPTRRLPNGYRASSPSSQHHHGPTHPGPHKVPPPQPRGPRTKDLHEPYNNTDDNRC
NT seq
7557 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggttcgaaaacgagatgccgtccaggtatggcggcggccacggccatggacca
gggcatgggcatggacctggaggccctggccgcggcggcagtcggcagggtggcccgcct
ggaggccccgggggacagcgggtctacaagcagtccatggcgcagagagcccggaccatg
gccctgtacaaccccatcccggtgcgtcagaactgcttcaccgtcaaccgctcgctgttc
atcttcagcgaggataactttgtgagaaaatacgccaaaaagattacagaatggcctccg
tttgagtggttgatcctggccaccatctgtgccaactgtattgtcctggctctggagcaa
catctgcctgatggagacaagactcctctgtctgaacgcctggatgacactgagccctac
ttcatagggatcttctgttttgagtcaggcattaagatcctggctctaggatttgccttc
cataagaactcctacataaggaacggatggaatgccatggacttcgtagtagtatgcaca
gggatcctgtctacagtgggatcggacttcgatttgcggactctgagagcggtccgtgta
ctgagacccctcaaactggtgtctgggatacccagcctccaggtggtcctcaagtccatc
atgaaggctatgattccactgctgcagatcggcctgttgctattcttcgccatcctcatg
ttcgctatcatcggcctggagttctacatgggcaaattccatactacctgcttcgacatt
cacacagatgagattcgtgaggaagttccgtgtgggaccgaagccccgtcgagactatgt
ccaaacgggaccacgtgtcgaaagtattggctggggcctaactacggcatcacccagttt
gacaacatcctgtttgccgtgctcactgtcttccaatgtattaccatggagggatggact
gacctgctctactatagcaacgatgcctcagggagcgcgtggaactggatgtacttcatt
cccctcatcatcatcggctctttcttcatgttgaacctggtcctgggtgtactgtctggg
gagtttgccaaagagagagagcgagtggagaacaggagtgagtttctaaagctgaggaga
cagcagcagatagagagagagctcaatggatacctggaatggatttgtaaagcagaagaa
gtgatcttagcagatgatgaagaccctgatgcctttgacggtattttcccaagcacccgc
aggagacccaccatcaaaaaccacaagaacaaaacagatctccttaacccagaggatggg
aatggagacctggcactgggttctccctttgcgcgggccagtctgaagagttcaaagctg
gagggctctaacttccataagagggagcgtcgtctgcgtttcttcatccgacgcattgtg
aagacccagtatttctactggagtgtactgtgtctggtgggacttaacaccatgtgtgtg
gctgtagtacactatgaccagcctgaaccactctcagacttcctctactttgcagagttc
gtcttcttgagtatcttcatttctgagatgggtataaagatttatggactggggtcacag
ccttactttcactcctcctttaactgctttgactgcattgtaatatgtggcagcatattc
gaggtgctgtggggttttatccagcctgggacatcctttggtatcagtgtattacgagct
ctaaggttactgagaatcttcaaagtcaccaagtactgggcgtctttgaggaacctggtt
gtatctctgctcaactccatgaaatccattataagcctgctcttcctcctcttcctcttt
atcgtcgtcttcgctctgttgggcatgcaactcttcggaggacagtttaattttgaatct
ggcactccctcgaccaactttgatactttccctgcagcaataatgactgtgttccagatc
ctgaccggagaagactggaacatggtcatgtatgatggaatagaatctcagggaggagtc
aacaacgggatggtcttctcagtcttcttcatcgtgctcacacttttcggcaactacact
ctgctgaatgtgttcttggccattgctgtggacaatctggccaacgcacaggaactcact
aaggacgagcaggaagaggaagctgcttccaagaaaaatgctttgcaaaaagccaaggag
gtggccgaagtcagccctcagtctgtagccaacatgtccatagcggccgaaaaagtaaac
agcacaggtcacaacgcttccgacccctttctggactgtaaggagcagcagaagaacaat
aagggtggtaataagtccgtgtgggaacagaggaccaaggagctgaggaaacagactcta
atgaccagcagagaggccctctacaacgaactggacccagaggaccgctggaaggtgaac
tactcccgccacatccgtcctgacatgaagacccacacagaccgccctctagtggtggac
ccccaggagaaccgcaacaacaacaccaacaagaccaccaaagagcctgacccccgcctc
agccagcagcacgccgacgagctggtccgcaagcagacacatgtccacgagagaggaggt
gggggctcagggtctggttcaggccctggaaggccttacgagcgggcagactctacggag
agccgcaggagccgtaaggagagcaaggagcaccaggagctccaacaccaccactcctcc
catacccgcctagatgcaacgatgctgggacagagtggagaggagaggccccagagaagg
caccaccacccacggggccaggtgggatcatcggagcacaggaaaccccgccagcaccgc
atgcccccagaggacgaagaggggggaggtggaggtggtggaggaggaggaggaggaggg
gaaaggcgacacaagagcagggggacagaaggagaaggcgagggggagcaagaggggggt
gatggaggtgaaaggaggcagagacggcatcgccatggcactcagtcagggtgtgatggt
gaggggaagaggacgcggcaacaccgcaggaaggatggtcccaacctgtccaccacacgg
cccatccagaagagcctctgtagacaggacagccagtacagcgaggacatggacaatgtc
atgaacagtaaactggccaccagccagcccaagctacacccaggctacacccagcagccc
tgcccagcctcgggcctccccagcccagccaaccacactaccccaggcccaggcttcggt
cctgcaggcctcaacactcacctgactaacagcagctcccacctgggcctagatggaagc
ctggttcctgcatacggaagtagcacccggataccggaccacacggcagtggacatacca
cccatgtttccttcccacaatgccatattgcaggtcaataagaatgctaacacggagcct
ctgcctaagaaggaggataaggaggatgatgatgatgagaagggtgatgaagatggaccc
aaaccaatgcctccctatagctccatgttcatcctctctaccaccaacccgttccggaga
ctatgccactacattgtgactctgaaattctttgagtttggaatcctgtctaccatcgct
atgagcagtatcgccctggcagcagaagaccccgtctggccagaatcacctcgcaacaat
gttctgcgctactttgactatgtgtttacgggagtgttcacttttgagatgttgattaag
atggtggatctgggcctggtgttgcaccagggctcctatttccgtgacctgtggaacatc
ctggactttatagtggttagtggtgctctggtggccttcgccttcacgagcagtagcggg
ggaagcagtaaggggaaagacatcagcacaatcaagtctctgagggttctgagagtgttg
cgacctctgaagactatcaagcgtcttccaaagctcaaggctgtgtttgactgtgtggtc
aactccctgaagaacgtcctgaacatcctcatcgtctacatgctcttcatgtttattttt
gctgtggtggccgtgcagctgttcaaaggaagattcttctactgcactgacgagtccaaa
gagtttgagcgcgattgcaggggcgaatatctagtctatgagcggaataatgaagtgaag
gcgcagaagcgggagtggaagaagtacgatttccactacgacaacgtgctttgggccctg
ctcaccctcttcaccgtttctaccggagaggggtggccgcaggtgctgaaacattcagtg
gatgcgacctatgagaatcagggcccgagcccggggtaccggatggagatgtccatcttt
tacgtggtgtacttcgtggtcttccccttcttcttcgtcaatatcttcgtagctctcatc
atcatcactttccaggagcaaggagacaagatgatggaggattacagtttagagaaaaac
gagagaggctgcatagacttcgccattaatgccaaaccgttgacgcgacacatgcctaag
aacaagcaaagctgccagtaccgcatgtgggagtttgtggtgtcgccgccattcgagtat
acaatcatggctatgatcgcgctcaatactatcgtacttatgatgaagtatgacggagcc
tctccggcctacgaggctgtgctggccaacctgaacatcgtgttcacctcgctgttctcc
atggagtgtgtgctcaagatcatcgcctttggagtgctgaattacttcaaagatgcctgg
aacatttttgactgtgtgacagtcctgggcagcattacagatattttagtgactgagctc
gggatgaataacttcatcaacttgagtttcctgagactgttcagggctgccaggctcatc
aaactgctccggcagggagaaaccatccgcatcctgctctggacctttgttcaatccttc
aaggcgctgccgtacgtgtgcctgcttatcggcatgctgttcttcatctatgccatcatc
gggatgcagctgtttgggaacatagggatggaggaggaggaagggagcgccatcaacgaa
cacaacaacttcaggactttcttccaagctctcatgctgctcttcaggagtgccacgggc
gaggcgtggcatgacatcatgctgtcgtgtcttggagggaagctctgtgatcctctggca
gggaacactgaaccagagtgtggcagccagtttgcctacctctactttgtgtccttcatc
ttcttctgctccttcctgatgcttaatctgtttgtggctgtcatcatggacaactttgag
tacctgaccagagactcctccatcctcggcccacatcatctagacgagtatgtcaggata
tgggctgaatatgaccaagcagcttgcggtcgcattcattataaggatatgtacagttta
ttgcgagttatcgacccgcctcttggcttaggaaagaaatgcccccatagagtggcctgc
aagaggctgctgcggatggacctcccggtcgccgacgacaactcagtccacttcaactcc
accctgatggccctgatccgcacggcgctggacatcaagatcgccaagggtacggaagga
ggtgtggacaaacaccagatggatgcggagctgaggaaagagatgatggcgatttggccc
aatctctcccagaagaccctggacctcttagtcacgccacataagtcagcaacagacctg
acggtggggaagatctacgctgccatgatgatcatggagtactacaggcagagcaaggcc
aagcgctctcaggcgcggctagaggcggagcagaatcgaacgacattactgtttcagcgc
gtggagccgccctcccccatccaggacgtgcctctcagcctccctcctacccaaccggca
gaccccgtcaacaccctaccggtggaggggggggttccagagagccagtcgtgggtgaca
gtgcgggctcaggagatgtcccagagagtaggcagctggagtcctgagggacagcactct
gaggatggcctggacagcaggcataactcgcagacggtagagatgagagagatggggcgt
gacggttactcggataccgagcactttcagccaatggaaggccacggaagggccgcttcc
atgccacgccttccaggcgacaaccaacagcgaaggaaagggaggcagcgtggaaataac
ctcagtactataacagataatagtcctatgaagcgctcggcctcctcccttggtcacagt
cgatctgggaggggccagagggaaaggggggggggcgatgattatgcaatggagtatgtg
atccccgaggagggcggagcaccgaggcacagccaccgacgccgtgaccgaagccaccgg
gcctccgagcggtcactgtgtcgatatacagacgcagatacagcaggactgggcacagac
ttgagcaccaccactcagtcaggtgacctgccacccaaggagaaggaccgtgaccgcgac
agagaccgcggtcggcagaaagaccgcaaacaccaccaccatcaccaccaccatcacagc
ggctctgtggacaaggagcgctacacaccagaccgtgccgaccgcgccgaccggggggga
gagcacggtggtcacagacagccccgaggagacagagactacgaccgggatagggagcac
gaccgtcgctggtcacggtcacccagcgagggcagagagtgcatgacacacagacagggc
agtagttcggtgagcgaaagtcccgctccctctacctcggggaccagtaccccgagacga
ggccgtcggcaactccctcagaccccggcaacgccccgcccacacgtcacctactctcct
gtcgtccgtaaagccatggccacacctcccggagcccagcccctggggcgcaatcccgcc
cctcaccgcttttcccctgagcccccccagggaccttccccaccccaccatggctcaccc
aaccaagcctgccacctccctccccgctggggggacgggggaggagaaggaggaggagga
gagagtgggtcgctggagggcgacggctgcttctacaaccaagattaccaggattacgac
cgtgagcaccacaaaccgcctccctacgagcagagccccacacagggcaaccctcacaaa
cctcaccccctcaaccaccctactctccccgtgctaaaccatcccccaaccccacagcag
cagcaccctatcaacccgcacccaaacaacccccaccccaacaacccccactcccgcacc
tcgcccaggacttcccgccacgcgcccccacccaacaccacccccacccaccaagggcag
cagcctccccccactcgacgcctccccaacggctaccgtgcctcttccccctcctcgcaa
caccaccacggccccacccaccccgggccccacaaggtcccccctccccagcctagaggg
ccccgcactaaagacctgcacgaaccctacaacaacacggatgacaacaggtgctag
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integrated database retrieval system
