Oncorhynchus nerka (sockeye salmon): 115103896
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Entry
115103896 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 54-like
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
one01009
]
115103896
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115103896
Protein phosphatases and associated proteins [BR:
one01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115103896
Membrane trafficking [BR:
one04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
115103896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
SBP_bac_6
Motif
Other DBs
NCBI-GeneID:
115103896
NCBI-ProteinID:
XP_029480793
LinkDB
All DBs
Position
LG21:complement(10206960..10224238)
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AA seq
1019 aa
AA seq
DB search
MFRLCLCFVLILSDSELFLLTQLASVERCTDAMASHSSSPVPHPSSGGSEGIFRKDRDPS
SRHYRPVHSLPDVCPKEPTGEAARGLCEGPSVVADQHRWTVYNSKVNLPAALNDPRLAKR
ESDFFTKSWGLDFAETEVMPSFYLPNITKEHFGPYLQETAQREKIHERCKNICPNKDELD
AVSSITNNHDKSRTELEQVPKIFMKPDFALDDPTTFNAVLPWSHFNSAGRKSSRDMASSR
LLQEKLSHYLDVVEVSIARQISLRSEAFFHAMSSQHELQDRLTETARAVAVLRGRTAAIE
RIMCEGPLRALRQALTRSNCARLHNKLKLMAAVHQSQPTVQLLLSTSEFVGALELIATTK
EVLQQELQGIHSFRHLGSQLCEMEKLIDKMMVEDFSMYSRSDLSRSLEDDGQVMEKDRLE
SLVFGLLRQRKLDFLDIYSDEMILAAKSIVTQSVVDSVSQIEEIDTDIVTKLADQMRLMT
FRQWFELLKFVFENFILFLKRIKATLSVVRNVVLEALDSNQKSRLLERAAAGSLAEAPGT
PLNQGEAELAYLTHEGLFISDALNDAQLHLGAGGGQEQSSTVGPRQALSRLDGCGSDSAS
GTTESSSSREHALQPGGAAGISSSEDMMPSDLELGRVANNIQELLYTASDVSHDRCVKVL
MARAKDGSLERLSSAEFVFLSQAVEGFVRDTEELCCRRSVXLRGALQSQANRFVHRFHEE
RKTKLSLLLDNERWKQAEVPAEFQDLVNSIADGRITLPERKPQGTEERKPSDYLHIDGQK
YAVVGTVLLLIRIFLEYCQCVNDIPSISTDMLTRLSDLLKHFNSRSCQLVLGAGALQVVG
LKTITTKNLALASRCLQLVVHYIPVIRAHFETKLTPKQYSVLRHFDHITKDYNDHIAEIS
AKLVSIMDSMFEKVLSKYEVKAPMPSACFRNVCKQMAKMHEALYELLPEEQAQMLFLRIN
ASLKIHLKRQLARLGVHHDGGPQHGLVTVDVAFYTENVQSLRTLEKLDLNMAEIWEQKR
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgtttaggctatgtctttgttttgtattgatactctctgactcagagctatttttgcta
actcagctagcctccgtggagaggtgcaccgatgctatggcctcccacagctcctcccca
gtgcctcatcccagcagtggtggcagcgaggggatcttccggaaggacagggacccttcc
tcacgacactacaggcccgtccactccctgcccgacgtctgccccaaggagcccacgggc
gaggcagcccgggggctgtgcgagggcccgtcggtggtggccgaccagcacaggtggacg
gtgtacaactccaaggtgaaccttccagccgcgctgaacgacccacggctggccaagagg
gagtctgacttcttcaccaaatcctggggcctggactttgccgagacggaagtcatgccc
tccttctacctccccaacatcacaaaggaacactttggcccctacctgcaggaaacagct
cagagggagaaaatccatgagcgatgcaagaatatctgtcccaacaaggatgagctggat
gcggtctccagcatcacaaacaaccatgataaatcaagaacagagttggagcaggttccc
aagatcttcatgaagcctgactttgcactagacgacccaacgacctttaacgcggtccta
ccatggtcccacttcaacagcgctgggcggaagagcagcagggacatggcatcgtcacgg
ttactacaggaaaagctgagccactatctcgacgtggtggaggtgagcatcgcgcgccag
atctccctgcgctccgaggccttcttccacgccatgtcctcccagcacgagctccaggac
cgcctcaccgaaaccgcccgcgccgtggcagtcctccggggccgcacggccgccatcgaa
cgcatcatgtgcgaaggtccgctgcgggcactgcggcaggcgctgacgcgctccaactgc
gcgcggctgcacaacaagctgaagctgatggcggcagtgcatcagagccagcccactgtg
cagctgctgctctccacctcggagttcgttggggccctggagctcatcgccaccaccaag
gaggtgctgcagcaggagctgcaggggatacacagcttcagacacctgggctcgcagctg
tgtgagatggagaagctgatagacaagatgatggtggaggactttagcatgtactccagg
agtgacctcagcaggagtctggaggacgacggacaggtcatggagaaggacaggctggag
tctctggtgtttggcttgctcaggcagcggaagctggattttctggacatctacagcgac
gagatgatcctagcagccaaaagcatcgtcacgcagtctgttgttgactcggtgtcacag
attgaagaaatcgacactgacatcgtcacaaagctggcagaccagatgcgtctgatgacc
ttccgccagtggtttgagctgctgaagttcgtctttgagaacttcattctcttcctgaag
agaatcaaggcaacgctcagtgtggtgaggaatgtggtgctggaggcgctggacagcaac
cagaagagccgtctgctggagcgggctgcagcggggagcctggctgaggccccagggacc
cctctcaatcagggggaagcagaactggcctacctcacccacgagggcctgttcatcagc
gacgctctaaatgatgcccagctgcacctgggggcaggcgggggccaggagcagagctcc
acggtggggcccaggcaggccctgtcacgtttggatggttgtggtagtgactccgcctca
gggaccaccgagtcgtcctccagcagggaacacgctctccagccaggaggagccgccggc
atctcgtccagtgaggacatgatgcccagtgacctggagctgggccgcgtggccaataac
atccaggagctgctctacaccgcctcagacgtcagccacgaccgatgtgtcaaagtcctc
atggccagagccaaggatggctccctggagcgtctgagctcggcagagtttgtgtttctg
tcccaggcggtggaaggctttgtgagggacacggaggagctgtgctgcaggcgcagtgtg
ntcctaaggggggcgctacagagccaggccaaccgatttgtccaccgcttccacgaggag
cgcaagaccaagctcagtctgctgctggacaatgagcggtggaaacaggcagaggtccct
gcagaattccaggacctggttaactccatagcagatggcaggatcacactacccgaacgc
aaaccccaaggcacagaagaaaggaaaccaagtgattatttgcacattgatggccagaaa
tatgctgttgtcggcacggtgttactactaatccggatcttcctggagtactgtcagtgt
gtcaacgacatcccttccatctccacagacatgctcacccgcctctcagacctactcaag
cacttcaactcgcggagctgccagctggtcctgggggcaggagcactacaagtggtggga
ctcaagaccatcaccactaaaaacctggccctggcctctcgctgtcttcagctggtggtt
cactacattcccgtcatcagggcccactttgagaccaagctgacgcccaagcagtacagc
gtcctcaggcactttgaccacatcactaaggactacaacgatcacatagcggagatctcc
gctaaactggtgtcgatcatggacagcatgtttgagaaggtgctgtctaagtatgaagtc
aaggctcccatgccgtcggcctgctttcgcaacgtctgtaaacaaatggccaaaatgcat
gaagccctctacgagctgctacctgaggaacaggcacagatgttgtttctgaggatcaat
gccagccttaaaattcaccttaaaaggcagctggcccgtctcggggtgcaccacgacggt
ggacctcaacatgggctggtgacggtggatgtcgcgttttacactgagaatgttcaatca
ctgaggacacttgagaagctagacttgaacatggctgagatctgggagcagaagaggtga
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integrated database retrieval system
