Oncorhynchus nerka (sockeye salmon): 115108633
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Entry
115108633 CDS
T07952
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115108633
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
115108633
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
Na_trans_cytopl
PFF1_TM
GPHH
Zip
IQ
FraC
New_glue
Motif
Other DBs
NCBI-GeneID:
115108633
NCBI-ProteinID:
XP_029489055
LinkDB
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Position
LG3:34857747..34913456
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AA seq
1711 aa
AA seq
DB search
MVFEGPLPCNMNVFFPELHKLYCNCEFSCRYVTEFVNLGNVSALRTFRVLRALKTISVIP
GLKTIVGALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRNKCLRIPLNSTNLFDDS
VDFNGTELNKTSSFNWTYYMNDPRNYYYLPGKKDALLCGNGSGAGLCPEGFWCIKAGRNP
DYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLI
LAVVAMAYDEQNQATIEEAQQKEEEFQKLKRQQEDAQAAAAVTAGESGEFSERGELTDTS
SEASKLSSKSAKERRNRRKKKKQREEEERGDNDKFHRSESEGSMQKSRFRFSIDASNLLN
YDMRCSTPHQGNTTEPEYRKARCESYHASMNFLEDPGARQRAFSVASVITNTMEELEESR
QECPPCWYKFANTFLIWDCCPAWLRIKKTVKMIVMDPFVDLTITICIVLNTVFMAMEHHS
MSGDFKKMLSVGNLVFTGIFTAEMCFKIIALDPYCYFKEGWNIFDGIIVSLSLMEIGLAN
VSGMSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQL
FGKNYRDCVCKISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIV
FMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIGRIHQGIAFVKALVC
HSFHSICLRKKKGSLNEDKPLDDLHRTNYNSNHTTVEIMKDPEYVKDDNGTTGGVGMGVG
SNAAGKYIVNDNTDYMQFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDIEGSKEQLS
KDRPLSSSEGSTVDIRPPGEREGSVDMEPEESMEAEGCFTDGCVRRFQCCQVNVEEGKWK
MWWTLRKTCFRIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEFADKIFTYI
FILEMLLKWVAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYAELSAIKSLRTLRALR
PLRALSRFEGMRVVINALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCINMTTR
ERFEVRDVANKTECLALKGTHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRN
LDDQPDYEVNLYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKK
YYNAMKKLGSKKPQKPIPRPVNKFQGFVFDFITKQAFDIVIMILICLNMVTMMVETDDQE
NDIRKILYNINLVFIVMFTGECILKMISLRQYYFTIGWNVFDFIVVILSIIGMFLSEVIE
KYLVSPTLFRVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAI
FGMSNFAYVKKESGIDDMFNFETFGNSMICLFQITTSGGWDGLLAPILNKGEPDCDSRKE
HPGSTYKGGDCGNPSVAIIFFVSYIIICFLVVVNMYIAVILENFSVATEESAEPLSEDDF
EMFYEVWEKFDARATQFMEYDKLSDFADALDPPLRISKPNKIQLSSMDLPMVSGERIHCL
DILFAFTKRVLGEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKLEDMSALVIQRA
FRRYLLKRIVKRASAMYKEKIQSGGTLLDKEVLVIDKFNEISPSDRTDMTPSTASPPSYD
SVTKPEKNKYEKDKRKKEVKEKKKYMDVGKI
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgaggggcccttgccatgtaacatgaatgtcttttttcctgaactacacaag
ctctattgtaattgtgaattttcctgcaggtatgtaacagagtttgtaaacctaggcaat
gtttcagctcttcgcactttcagagtactaagagctttgaaaactatttcagttatccca
ggcctgaagaccattgtgggagcgctgatccagtcagtgaagaaactgtcagacgtgatg
atcctcactgtattctgcctaagtgtctttgccctagtagggctgcagctgttcatgggg
aatttaagaaacaaatgtttaaggatccctcttaactcaaccaacctctttgatgattca
gtcgactttaatgggacggaactcaacaagaccagctcgttcaactggacctattacatg
aatgatcccagaaattattactacctcccaggtaaaaaagatgctttgctttgtggaaat
ggcagtggtgccgggctgtgcccagagggattctggtgcatcaaagcgggccggaaccca
gattacggctacaccagttttgacacgttcagctgggccttcctgtctctgttcagactg
atgactcaggactactgggagaacctctaccagcagaccctgagggctgctgggaagcca
tacatgatcttctttgtgttggtcatcttcctgggctccttctatcttatcaacctaatc
ctggctgtggttgccatggcctacgacgagcagaaccaggccaccattgaggaggctcag
cagaaggaggaggagtttcagaagctgaagagacaacaggaggacgcacaggcggcggca
gcggtgacagcaggtgagagtggggagttcagtgagagaggggagctcactgacacctcc
tccgaggcctccaaactcagttccaagagtgccaaagagagacgcaacaggcgcaagaag
aaaaagcagagagaagaggaggagagaggggacaatgacaagtttcacaggtctgagtct
gagggcagtatgcaaaagagtcgtttccgcttctccatagatgcctccaacctgctcaac
tacgacatgagatgttccacaccacaccagggcaacactacggagccagagtacagaaag
gcccgatgtgaatcgtaccatgcctctatgaacttcctggaggacccaggggccaggcag
agggccttcagtgtagctagtgttataactaacactatggaagaacttgaagagtcgaga
caggagtgccctccttgctggtacaagttcgccaacaccttcctcatctgggactgttgt
ccggcatggctgaggatcaagaagacagtcaagatgatcgtgatggacccgtttgtagac
ctgactatcaccatatgtattgttctcaacacagtgttcatggctatggagcaccactca
atgtctggggatttcaaaaaaatgctttctgtgggaaacctggtgttcacaggtatcttc
acagctgagatgtgtttcaagattattgctttggatccgtactgttattttaaggaaggc
tggaatatatttgatggtatcattgtcagtttgagcttgatggagattggcttggccaac
gtgtctggaatgtctgtcctcagatcattccgattgctgagagtgttcaaactggccaag
tcttggcccacactgaacatgctgatcaagatcattggtaactcagtgggggctctgggt
aacctcaccctggtcctggccatcatcgtcttcatcttcgcggtggtgggcatgcagctg
tttgggaagaactacagagactgtgtgtgtaagatctctacagactgcacactgccccgc
tggcacatgcatgacttcttccactccttcctgattgtgttccgggtgctgtgtggggag
tggatcgagaccatgtgggactgtatggaggtggctggccagagcatgtgtctcatcgtc
ttcatgatggtcatggtcatcgggaacctggtggtcctgaatctgttcctggccctgctg
ctgagctcgttcagtgctgataacctggcggccacggatgatgacagcgagatgaacaat
ctgacggtggccataggccgcatccaccagggcatcgcctttgtcaaggccttggtgtgc
cactccttccacagcatctgtctgaggaaaaagaaggggagcctgaatgaggacaagccc
ctggatgacctccacagaaccaactacaactccaaccacaccactgtggagattatgaaa
gaccctgaatacgtgaaggatgacaatggcaccaccggtggggtaggcatgggagtgggt
agcaatgcagcagggaagtacatagtcaacgacaacactgactacatgcagttcatccac
aaccccagtctgaccgtcacggtgcccatcgctgtgggggagtcggactttgaaaacctc
aacactgaggacttcagcagcgattcctcggacatagagggaagcaaagagcagctaagt
aaagaccgtccactgagctcatcagagggcagtacagtggacatcaggcccccaggagag
agagagggctcggtggacatggagcctgaggagtccatggaagctgaaggatgcttcact
gatggctgtgtccgtagattccaatgctgccaagtgaacgttgaggagggcaagtggaag
atgtggtggacgttgaggaagacctgcttcaggatagtggagcacaactggtttgagagc
tttatcatcttcatgatcctgctcagcagtggagcgctggcatttgaggacatctacatc
gaacagaggaagaccattaagacggtgttggagtttgcggacaaaatcttcacctacatc
ttcatcctggagatgttgctgaaatgggtggcctatggatttgccaaatacttcaccaac
gcctggtgctggttggactttcttattgttgacgtctctttggtcagccttgtggccaac
gccctgggctacgctgagctgagtgccatcaagtccctgaggacgctgcgagcgctgagg
cccctgagagcgctgtcccgcttcgagggcatgagggtggtcatcaacgctctgcttgga
gccatcccctccatcttcaatgtgctgctggtgtgcctcatcttctggctcatctttagc
atcatgggtgtcaacctgtttgcagggaaatactaccattgtatcaacatgaccacgagg
gagcgcttcgaagtcagagacgtggcaaacaagacagaatgtttggctttgaaaggtacc
cactggaagaatgtcaagatcaactttgataacgtgggagcaggctatctggcactgtta
caagtggctacattcaaaggctggatggatatcatgtatgcagctgtggactctcgcaat
ttggatgatcaacccgactacgaagtgaatctgtacatgtatctgtactttgtggtattc
atcatatttggatccttcttcacactcaacctcttcattggtgtcattatagacaacttc
aatcagcaaaagaaaaagtttggaggtcaagacatcttcatgacagaggaacagaagaaa
tactacaatgctatgaagaagctcggctcaaagaaaccccaaaagcctatccctaggcca
gtgaacaagtttcaaggatttgtttttgatttcattacaaagcaagccttcgacattgtc
atcatgattcttatatgccttaatatggtcaccatgatggtggagacggatgaccaggaa
aacgacattcgtaaaattctctacaatatcaacctggtgtttattgtcatgttcaccgga
gagtgtattctgaaaatgatctcactccgacaatactactttaccattggttggaatgta
tttgactttatcgttgttatcctgtcgataattggtatgtttctctcggaagtgatagag
aagtacttggtttcaccaaccttattccgagtcattcgactggcccgaattggccgtatc
cttcgcctcatcaagagtgccaagggaatccgtacactcttgtttgcgttgatgatgtca
cttcctgcattgttcaacattggtctcctgctcttcttagtgatgtttatctatgcaatc
tttggcatgtccaactttgcatacgtcaagaaggagtctgggattgacgacatgttcaac
tttgagacgttcggcaacagcatgatctgcctgttccagatcaccacgtcagggggctgg
gatggcctgctggcccccatcctcaacaagggagagccagactgcgacagccggaaagag
cacccaggaagcacgtacaaggggggagactgtggaaacccctctgtggccattatcttc
tttgtgagctacataatcatatgtttccttgttgtggtcaacatgtacattgctgtcatc
ttagagaacttcagtgtggccactgaggagagcgctgagcccctgagcgaggatgacttt
gagatgttctacgaggtctgggagaagtttgatgcgcgggccacccagttcatggagtat
gacaagctgtcagactttgctgacgccctagaccccccgctacgcatctctaagcccaac
aagatccagttgagctcaatggatttacccatggtgagtggggagcgcatccactgcctg
gacatcctgtttgccttcaccaaacgtgtcctgggcgagggcgaaggcttggacatcctc
cggggtcaaatggaggagcgctttatggcctccaacccctccaaggtgtcctacgaacca
atcaccaccacactacgccgcaagctagaggacatgtctgccctggtcatccagagagct
ttcagacgatatcttctcaagcgtattgttaagcgggcctctgccatgtacaaggagaag
atacaaagtggaggcacgctccttgataaagaggttctcgtcatagacaaatttaatgag
atctctccttcagacagaactgacatgacaccctccacagcttctcccccatcatatgac
agtgtcacaaaacctgaaaaaaacaaatatgaaaaagacaagagaaagaaggaggtgaag
gagaaaaaaaagtacatggatgttgggaagatttag
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integrated database retrieval system
