Oncorhynchus nerka (sockeye salmon): 115109384
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Entry
115109384 CDS
T07952
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115109384 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115109384 (edc4)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115109384 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
115109384 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
Pdc1_Ge1
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
115109384
NCBI-ProteinID:
XP_029490074
LinkDB
All DBs
Position
LG25:18689527..18724410
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AA seq
1403 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPCESQRKTSFNGELNGLLPGAGSRSTMD
ESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLPPDEESESMTAEGIQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSSFLPHS
NDGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPALPAPADFMSPTGAAAMPKLMTPD
AFMTPSASVPASPGSSASSLKIVTAMTSNSDSGARGGEELTQNPKMSVENSSSLTLSVST
SSPRASSLLISGLGDNMPVLPSPNPPLSLDPQAIEPMLIQHASPTLARSPDVISSASTAM
SQDIPEIASETLQRSLGVVSGAESRDPLPALHTDSMASAASALHHLSPRNRNNSDHGHLT
LELGAGAVEAEQRLSNTPSLLENALSQENAAASCSDNNTSHPWPAAPDITRETRNSLRDN
GLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNCGARSS
QRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEHHNHQHQMNPEVQEELLMLLR
NQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERILAEGQNR
NQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLEPVTAQMNNTIAAKLT
AVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQ
QINDSFKQGTHEYIQQLETHVKSRKQHEQEGQDPMIGQLQQMIDTFQNSTDQLATTVTAS
VRSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSAAGTPVP
TPLLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQHPCPLIQ
PVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKLFQFLQQ
DPHSPLSKRARRLVMMLQGLVNH
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtagacgcatctccatgtgagagtcaaagaaaaaca
tctttcaatggcgaattgaatggacttctgccgggagctggcagcaggtcaacgatggat
gaatccacaggccctaattcagagaacatgaatacccaagagtgccagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatccaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcatatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgccgagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggactccaccctgctgggatgtgttgatgaagccggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcctttcatcctagag
gacaatgaagagaatcctgaggatgctagccagaccctggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggacggcgttataaccataaaaggacataccgagcgtataagtgaaggt
gccctgtctccagatggtacagtcttggccacagccagtcatgatggttatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgat
cagaaccaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcagg
ttctctccagacccgttcaactcctcagtcctgcccagtctaaaggccagcctggacctc
tctgcagaatgcctcatcctcagcgacgtacagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtctgagttcctgctcaca
caccctgtactcagctttggtgttcaggacgtcagccgcagccgcctgcgccacacagag
gtcctccccccagatgaggagagcgagagtatgactgcagagggcatccagggcccaatg
gaatccagagctgggatccaaataaagctatactgtgtccacacaaagtctcttcaagat
gtgcagatctggttccagccaaaccttgggtctggctcttcctcatttctgcctcactca
aacgatggctttggtttttcggatcacttgacagacatgagcatggaaggtttgagctct
gacaaggagtctggatgtggctcccaaaatgatctccggaagattcccgcccttcctgct
cctgctgacttcatgtcccccactggcgctgccgctatgcccaagctcatgacccctgac
gccttcatgacccccagtgcttcagtcccagcctccccaggcagcagtgccagcagcctg
aaaattgtgacagccatgaccagcaactctgacagtggcgccaggggaggagaggagctg
acccagaaccccaagatgtctgtggagaacagtagcagtctgaccctcagtgtgagcacc
agcagccccagagccagctcccttctcatctcaggcctaggggacaacatgccggtgctt
ccctctccaaacccgcccctctcgctggacccacaggccattgagcctatgctgattcag
catgcctctcccaccctggctcgctctccagacgtcatctcatctgcctccacggccatg
tcccaggacatccctgagatcgcctctgagacgctgcagcgaagcctgggggttgtgtct
ggagctgaatcccgagaccctctcccagccctccacacagacagcatggcttcagcagcc
tcagcccttcaccacctctctccacggaaccggaacaactctgaccacggccacctgacc
ctggagctgggtgctggagcagtggaggcggagcagaggctcagtaacactccttcacta
ctggagaatgccctgtcacaggagaatgccgctgcctcctgctctgacaacaacacaagc
cacccctggcctgcagctcccgacatcacacgggaaacgcgcaacagcctgcgggacaac
ggcctaggagactgctcaagggaggaaatgaaggacagacacatgtcctctccataccac
agacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaacaaagtgac
catgatgacgaggtggccagtctagcgtcgtcctccgggaactgtggagccaggtcgtct
caaagactgccagtgaaggaatggaagagctctcccagaggctcccctaaactcaagagg
aagagtaaaaaagatgacggggatgcatctcatgcctctcagtccaggcagcctgagcat
cataaccatcaacatcagatgaaccctgaggtgcaggaagagctgctgatgctgctgcgt
aaccagcagagggagctagcggatctccgtcagagtcagctagagctgctgcagagagtg
acgggccacatggacgccgtgcagagctctgtcatagcccatgtggagcacgtcatggtc
agccagcaggagcatgaacagaggagaatggagagaatcctagcagagggacagaaccgt
aaccagcaactccaggaacatctctcccagcagctggctcaaactctcaacaacaccctg
tgtaatcgtctggacaagactctccgagaggagatgaagaaaactgttcctcccactatt
atcaagagtctggagcctgttactgcccagatgaataacaccatcgctgctaagctgacg
gctgtggaggcagcactgaaggagaacgttagcaaagtcgtcaagtcaaagaacaccaca
gatgcaataggccgggcagctgctgaggcaatgcaggggcctatccaggctgcctacaag
gatgcgttccagagcattgtgctgcctgtgtttgagaggggctgccagtctatgttccag
cagatcaatgacagcttcaagcagggaacccatgagtatatccagcaactggagactcat
gtgaagagcaggaagcagcatgagcaggagggccaggaccctatgattggccagctgcag
cagatgattgacacgttccagaattctacggatcagctggccaccactgtcacagcaagt
gtccgctcggaggtccagcaccagctcaacatgacggtgggaaacctgcaggaatcgatc
ctgacccaggtgcagcgcatagtgaagggtgaggtgagcatggccatgaaggagcagcag
gcagctgtgacctccagcatcatgcaggccatgcgctctgctgcaggcacgcccgtccct
accccactcctcgactaccaggcccagcaggccaacatattgcagctgctgcagcaggga
cagctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctggttctgtat
gtgtgcgagaccattgactcccagcaggtgtttggccagcatccctgccccctgatccag
ccagtgctgctgtccctcatacagcagctgtccactaacctggccacacgctctgagctc
aagatcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacgaga
gaccacatgagtactgtgctgtcccaggtccgacagaaactgttccagttcctgcagcag
gacccacacagtcctcttagcaagagagcccggcgcctggtgatgatgcttcagggcctt
gtcaatcactag
DBGET
integrated database retrieval system
