Oncorhynchus nerka (sockeye salmon): 115109609
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Entry
115109609 CDS
T07952
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
115109609
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115109609
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
115109609
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
115109609
NCBI-ProteinID:
XP_029490576
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Position
LG25:complement(34607119..34635149)
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AA seq
1340 aa
AA seq
DB search
MFNWVVKVVPQPPDAPGSLGQETVNPTPASPQKVSKGEVKKEVNAKPATLKEEVISEDNG
IQSQSGVMTWLSNGFTSALPQPTGSPNLSRSNSVSRSLQEVQREDERNGVIKWIAEGLSK
VVPQPDDKYREDIREEEEEETETHEEYIAEPCVYNMKDVPDAEPLPHIPVVEIFSDDEEE
DRVPQFPLKVVNWIKNVIPQPVMLPAGYVEAQSKAQSKRSSLDKVLSPPPESLKGDEDSQ
NSNVVGWFVTGLGLKMPQPVVRSRDDVEVVQNISKQPKAVDLVLEEVVEADLKDLNQEAP
SKAMQSEPPQPFKPAQTTQPTQTTQSQPAQPKQPVKPEEPEQTLPNVPESTTPSLEDAET
QTGRWTPFIESIKREAEGVAMATMEERMTQERVDLVRMAEEVARHTAETAIRQMQEAQSI
KLSIHSQEAILEEDEDPELHMLREEESEVEHTKNKMTECQVCPAKEQPVDAAKSAAQSER
DFASPNVEPEPQEELESQRASPSPPLSPEPDPVKRAEPEPKPKAQDAKVAPEPVTQQPQK
AEGAEDGTAPDTTTKEEGETAEEGGCGASSRLSVHPAVNVEDVDSGGGGHRRHIRQILTP
QDPNLKTLTVPRVSKASRQSKVADKEKNLHSQSEDDDEEETETAVRAWPSQSSILSGDDG
LKERPASSASQASYVVNERLQELVKMFKERTERAKEKLIDPDDSDDDSPTASPARAPTPP
PAPPEEPEEEAQPASPEREMEEQQPQSRLCCKVTPPRWIRALLQYRFPSSIDPFTNLVYV
LWLFFVTLAWNWNVWLIPMRWAFPYQTPSNIYLWLLADYLCDLIYILDIMVFQPRLQFVR
GGDIVFDKKDMRKNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPRLLKVMSFFEFND
RLEAILTKAYVYRVIRTTSYLLYCLHCNACLFYWISAYEGLGSTKWVYDGKGNSYIRCYY
FAVKTLITIGGLPEPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVGAATSGQTYYRACM
DNTVKYMASYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMRLDIAVDVNYDIV
SKVSLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGKT
VFVTLKSGSVFGEISLLAVGGGNRRTANVVAHGFANLFILDKKDLNEILVHYPESQKLLR
KKARNMLTKDKKPKEPPKEPAQVIPPRTETPKLLKAALEMAHQKTGLKRTLAKIKENTNI
SSISLQPSMSSSLTPLSPVTPVSSLDPERKSSIMSPTSDSSTWLRPASHCHRGETLSKEQ
DNVAEEEAGESGKRKEKRKP
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggttcctcagccccctgacgcccctggctctctggga
caggagacagtcaatcccacacctgcatcaccacaaaaagtgtctaaaggtgaagtcaaa
aaagaagtcaatgcaaaaccagccacactgaaggaagaggttatttcagaggacaatggt
attcagagtcagagtggagtgatgacctggctctccaatggcttcaccagtgctctgcct
caaccaacaggcagccctaacctcagcagatccaactctgtatccaggtcactgcaggag
gtacaaagagaggatgaaaggaatggggtgattaagtggattgcagagggactgagcaag
gtggtgcctcagccggatgacaagtacagagaggatattcgagaggaggaggaggaggag
acagagacgcacgaagagtatatcgcagagccatgtgtttataacatgaaagatgtgcca
gacgcagagcccctcccacacatacctgtggtggagatcttttcagacgatgaggaagag
gatcgggtaccacagttccccctcaaagtggttaactggattaagaatgttattcctcag
cctgtgatgctccctgcaggttacgtagaggcccagagtaaggctcagagcaagaggtca
tctcttgacaaagttttatcgccacctcctgagtctctcaaaggtgacgaggactcacaa
aactccaatgtcgtgggctggtttgtgacgggcctcggcctcaagatgccacagcctgtc
gtgagatcaagagatgacgttgaagttgtgcagaatatctctaaacaacccaaagcagtg
gatctggttctggaggaagtagtagaagcagacttgaaggatttgaatcaggaagcgcct
tccaaggctatgcagtcagaaccaccacagccttttaagcccgcacagacgacacagcca
acacagacgacgcagtcacagccggcacagccaaaacaaccagtgaaaccagaagagcct
gaacagactcttccaaatgtgccagagtctacaacaccatcgctggaggatgctgagact
cagacgggcaggtggactcccttcatagagagcatcaagagagaggctgagggcgtagct
atggctaccatggaggaacggatgacccaggagcgcgtggatttggtgcgaatggcagag
gaggtggccagacacacagctgagacagccatcaggcagatgcaagaggcacaatcaatc
aagctttccattcacagccaggaagccattctggaagaagacgaggacccagagttacac
atgctacgggaggaggagagtgaggtggagcacactaagaataagatgacagagtgccag
gtgtgtcctgctaaggagcaaccagtggatgcagcaaagagtgccgctcagtcagagcgc
gactttgcatcacccaacgttgaaccagagccccaggaagagctagagtcacagagggcc
tctccatcccctcctctcagcccagaaccagatccagtcaagagagcagagcctgaacct
aaaccaaaggcccaggatgccaaagtagcacctgaaccggtgacccaacaaccacagaaa
gcagagggggcagaggacggaactgcacctgacaccactaccaaggaggagggggagact
gcagaggagggtggctgtggtgcgagctccaggctcagtgtgcaccctgctgtcaacgtg
gaggacgtggattcaggcggaggggggcaccgtcgacacattcgccaaatcctcaccccc
caggaccccaacctcaagaccctgaccgtacccagagtgtccaaagccagccgccagagc
aaagttgccgataaagaaaagaacctgcactctcagagtgaggatgatgatgaagaggag
actgagaccgcagtgagggcgtggcctagccagtccagcatcctcagtggagacgatggg
ctaaaggagcggcctgcgtcgtccgctagccaggccagctacgtggtgaacgagcgccta
caggagctggtcaagatgtttaaggagaggaccgagagggccaaagagaaactcatagac
ccagatgactctgatgatgacagtcccactgcctcccctgcgagagctccaacacctcct
cctgcgcctccagaggagccggaggaggaagcacaaccagcctcccctgagagggagatg
gaggagcagcaaccccagtctagactgtgttgcaaggtgacacctcctcgctggatcaga
gccctgcttcagtaccgcttcccctctagcatcgaccccttcaccaatctggtctatgtg
ctgtggctatttttcgtcaccttggcgtggaactggaacgtgtggctgatcccgatgcgc
tgggccttcccctaccagacccctagtaacatctacctgtggctgctagccgactacctg
tgtgacctcatctacatcctggatatcatggtcttccagccccgcctgcagtttgtccgc
ggtggcgacatagtgtttgacaaaaaggacatgcgaaagaattacatgaaaactttccgg
ttcaagatggatgtcatcagtcttgtgccactggagttgttctattttaaaactgggatc
aacccactcctccgcttcccacggctactaaaggtaatgtcttttttcgagttcaacgac
cgtcttgaggccatcctgaccaaagcctacgtttacagagtgatccggaccaccagctac
ctgctgtactgcctccactgtaacgcctgtctgttctactggatttctgcgtatgaaggt
ctgggctccacgaagtgggtctatgatggaaagggcaacagttacatccgctgctactac
tttgctgtgaagactctgatcaccattggtggactgccggagcccacaacgctctttgaa
atcatctttcagctcatcaactactttgttggagtgtttgccttttccatcatgatagga
cagatgagagatgtggttggtgcagccacttccggacaaacgtactacagagcatgcatg
gacaacactgtcaaatacatggcctcctaccgtatccccaaagacgtgcaaaaccgggtc
aaaacctggtacaactacacctggcagtcccagggcatgctggatgaacaggagcttctg
gtccagctcccagacaagatgaggctggacatcgctgtggatgtcaactatgacattgtc
agtaaagtctctctcttccagggttgcgacagacagatgatctttgacatgttaaagagt
ctgaggtctgtcgtttacctcccgggggactatgtctgcaaaaagggcgaggttggacgg
gagatgtacatcatcaaggccggggaggtgcaggtggtgggcgggccagacggaaagacc
gtgtttgtcacactgaagtcggggtcagtgtttggggaaatcagcttgcttgcagtgggt
ggaggaaacaggagaacagccaacgtagtggctcatggcttcgccaacctgttcatcctg
gacaagaaggacctcaatgagattttagtgcattaccccgagtctcagaagctgctccgc
aagaaggccaggaatatgctgacaaaagacaagaagccgaaggagcctccgaaggagccg
gcccaggtgatccctcctcggacagagacacccaagctactcaaagctgctctggagatg
gctcatcagaaaacaggcctcaaaaggacccttgcaaagattaaggagaacaccaacata
tccagtatttcgctacagccctcaatgtcctcctccctgacccccctgtccccagtcact
ccagtctccagtctggacccagagcgcaagtctagcatcatgtccccaacctcagacagc
tccacgtggctccgccccgcctcccattgtcacagaggtgagacgctgtccaaggagcag
gacaacgtggcggaagaagaggcaggagagagtgggaagaggaaagaaaagagaaagcca
tga
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