Oncorhynchus nerka (sockeye salmon): 115111296
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Entry
115111296 CDS
T07952
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115111296 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115111296 (ttc37)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
115111296 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_17
TPR_8
TPR_16
TPR_14
TPR_11
TPR_9
TPR_12
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_15
ANAPC3
TPR_EMC2
ARM_TT21_C
HAT_PRP39_N
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
115111296
NCBI-ProteinID:
XP_029493069
LinkDB
All DBs
Position
LG27:complement(4919244..4955118)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEAIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGANKAELLQLWQQMTCLLSDSMEDHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKIKEACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGAGEEALGQKLLRLRLEALVRTGD
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAVQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMNEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARCLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRACVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLENYG
LAQHSFIKSVQVEPNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQALI
AEMVGSYDTMDLFRHTTELRTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAVSA
AQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFSLG
SYGRALCNTGQWEEAVHVYSSTPLEVLHDLAGLALAYCRAGLIPESISSYEKALMVTSTE
KEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLASAA
LTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSRLV
PQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQRAV
LLCPDDPAAWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPLAQ
ALEGWVLQQAVTGLTIGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHHLLSSAGTA
LPASVLEQLSSAVSANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLYSGKM
ACLLRLALLALSPCMSKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMSARE
TRRLLERLVYFSSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDSRLLEFH
TRLTSC
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggctctaaaacactgcaaggctgtcctgaaactagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttctgacaaaacaaaatgttatgaggcgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctaacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggatcacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctctgacaatgtgcctggcgaggac
catcggaagctctcagctgattacctcaaatgcctttcacaactttcgcatgaggagtgt
aaaattaaagaggcctgtgagtccattttggccctctatccctcacaaacatttcctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgaggacgcaggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtggggctggagaa
gaggcactgggacaaaagctcctgaggctgaggctagaggcccttgtgaggactggggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcctatttgcaaaaaggccaagttgaccaagtg
ctccaggtgtccacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggacatcaccaactagcagaacagagcctcctgcag
gctgcagtccagagcccagcctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaatgagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagaatacctgcagatcatagcccaggaggactatgtg
cctgcactcaaaggtcttggggagtgtctgctgtccttggccagatgcctgatggaggac
tatagagatggaggagccatagacctcatccagcaggccatccagtacctcttcagggct
gtagagctgcgcccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcctgcgttgtggtgccaggacccctggccgggtta
caacccccagaccagggccaccttctcaaccaaggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagatggagcacaacacc
ctgctactggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagtagtaac
catagctactggaacgccctgggagtggtcgccatgagcaaaggacttgagaactatggc
cttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgttgcttgg
acaaacctgggtgctttgtatctgaagaaagacagtgttgagctctcccatgaagcattt
aagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcccttatt
gcagagatggtgggcagttatgataccatggacctgttcagacacaccacagagctcagg
acacatacggagggggtaaagggctatgcttactgggtttgtgccactctgctggataag
agtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtgtctgcc
gctcaggtggctttgagcaagtacacagagcgcatccagacagaccctgatgccttcgtc
atgctgggtttcctcaacgagcacctgcagctaaagaagcaggcagtgctggcttaccag
agagctgtggagttgctgcaggcgacgccttccgtggagttactggccttctccctggga
agctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcacgtttactct
tccacacctctagaggtgctccacgacttggctggcctggcgctggcctactgcagagca
ggactcatcccagagagcatcagttcctatgagaaggctctgatggtgacctctactgag
aaagagaaggcctacattctgacttctctggctctgctgcagcacagactggggaacatg
gactctgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgccagagtct
ctgctgtgcctgtgtgctctggggcttgtccatggggacagcaccctggccagcgcggcc
ctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaacgctgcctg
ctcacctgcaccctgctggccctgcagggcaactacagcgctgtgcagcgagaggcctcc
agggccgtccacagtaaccctggcaacccttccctgtgggccctgctttccagactggtg
ccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgttgcgtgtctc
tccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctggcatgt
ggcaggcactctggagaagatcgcagcaggaacgccctgaagaccatgcagagggctgtg
ctgctctgccccgatgacccggcggcgtgggcggggctaatggctgcttgtcacacagag
aacacagcctgctccctttctggctccacccctggcagacgaggcttggagcaggtgctc
atggccgtggtgtcagagaaagtacggaatgtggaggaggtggaacagcctctggcccag
gctctggagggttgggtgctgcagcaggctgtgacaggactgacaattggaggccagcta
gagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcaccccgctgta
gtcctgctgttgaggcaggtgcaatgtgaacaccacctcctgtctagtgccggtactgcc
ctgccagcttctgtcctggagcagctcagcagtgccgtctcagccaatcacacctcagtg
gccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacaggcagta
atggcctacagacaaagcctgcagctggcctcccagcttgacctctacagtgggaaaatg
gcatgtcttctgcgcctagccctgctggccctcagcccctgcatgtcgaaagtccctggt
gatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggcccctcc
cctgtagctctccttgttcaggccctgctacacttcgccaccaagatgtccgccagggag
acgaggcgtttgttggagaggctggtgtacttctcctcccaaggttacccagagactgtg
gcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacctggagctg
atggacaccctggtggatgacgccaaagccagtggagacagcagactgctggagttccac
acacggctcacctcttgctga
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integrated database retrieval system
