Oncorhynchus nerka (sockeye salmon): 115119918
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Entry
115119918 CDS
T07952
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115119918 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115119918 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115119918 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
one00535
]
115119918 (col9a2)
Proteoglycans [BR:
one00535
]
Extracellular matrix (ECM) proteoglycans
Others
115119918 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115119918
NCBI-ProteinID:
XP_029504675
EnsemblRapid:
ENSONEG00000018463
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MSGLSAVLKSWVILQTLCLALAQVNGPPGPQGNPGPPGPSGTPGSDGIDGEKGPPGPSGP
QGLKGDPGEPGPDGRPGENGIDGLMGPKGDGGPIGNPGPKGQPGPGGEPGPTGPGLPGLA
GAPGPIGLPGEIGQTGPTGILGEPGPPGIPGPPGKPGPPGKFLGGEEGSADFQCPINCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGTKGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKAEAGPRGYKGINGPVGQPGPPGEEGPQGPPGEAGEKGDLGGRGIKGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGQAGRPGGPGHQGTAGLPGSPGTKGGPGGKGEPGPRGHV
GMSGAPGPQGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGIVGKAGNKGMRGPMGVPGAQ
GISGTKGDKGFQGKVGSKGDFGDPGVEGLAGEKGEKGLGGEPGPKGQQGVRGETGFNGPT
GDSGKPGDQGPGGLPGPRGLNGERGVPGMPGIVGAAGRDASDQHIIEVVLKMLQERLAAV
AVSAKRAVLGGAGVMGPPGPPGLPGAPGAQGPHGLTGARGIPGMFGASGQIGNTGLKGKR
GAKGDRGDPGKPHAGQPGPPGITGPPGIDGVARNGKPGDRGPQGSAGEAGRPGKAGPTGL
PGFCEAAACLAASAYTSPRLQDSARVKGPGV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctggactctcggcagtgttgaagagctgggtcatcctgcagactctgtgcctggcg
ctggcccaagtgaacggtcctccaggacctcaaggcaatcccggtccgcccggtccctct
ggcacccccgggtctgatggcattgatggggaaaaaggacctcctggaccttctggccca
caagggttgaagggggacccaggtgagcctggtccagatggacgtcccggagagaacggc
atcgacggtttgatgggaccaaagggagacggcggccctatcgggaaccctggacctaaa
ggccagcctggacctggtggtgaacctggacccactggacccggactgcctggactggct
ggagccccaggcccaatcggccttcccggtgagattggacagactggacctacgggcata
ttgggagaacctggacctccaggaattccaggacccccaggaaaaccaggtcctccgggg
aagttcttgggaggagaggagggcagtgcagacttccagtgtccaatcaactgcccagca
ggacctaagggtccccagggactgcagggggtcaagggacacaaaggtcgtgctggtgtg
ctgggagagcctggcagcattgggaaactgggtacgaagggagaggtcggcatctctggt
gagcagggaatcccaggacccccgggtcctatgggattgaggggttacccaggaatgatg
ggccccaaggcagaggcgggccctcgtggttacaagggcatcaatggaccagttggccaa
cctggaccgccaggtgaggagggacctcagggaccacctggagaggctggggagaaagga
gatttaggtggtcgaggtatcaagggcccacaaggagctgttggcaagaagggagagaat
ggtctgcctggtatcgacggaaaggatggcactcctggcatccctggaatcaagggtgcc
ccagggcaggctgggaggcctggtggtcccggtcaccagggaacagcaggtttgcctgga
agccccggaaccaagggtggacctggaggcaagggagagcctggtcccagaggtcatgtt
ggaatgtctggtgccccaggacctcagggtgagcctggtcttcctggtgaagctggtatg
gagggcgttcctggacctaagggtgacagaggccagaggggagctgtagggccacagggt
attgtcggcaaggctggcaacaagggtatgagagggcctatgggtgtcccaggggctcaa
ggcatctcaggaaccaagggagacaagggattccaaggaaaagttgggtcgaagggagac
tttggtgatcctggtgtagaaggcttggctggggagaaaggagagaagggtttgggtggt
gagcctggacccaaaggacagcaaggagtgaggggagagacagggttcaatggccccaca
ggagactcaggcaaaccaggagaccagggaccaggaggactgcctgggcctcgcggtctc
aatggggagagaggagttccaggcatgccaggcattgtgggggcagcaggacgggatgca
tcagaccagcacatcattgaggtggttctgaagatgctgcaagagcgtctggcggctgta
gcggtgagcgctaagcgtgccgtactgggtggagccggtgtcatgggtccccctggtcct
cctggactcccaggagctcccggtgctcagggcccacacggcctcaccggcgcccgcggc
atccctggcatgtttggagcctccggacagatcggcaacaccggactgaaaggaaagaga
ggagcgaagggagacagaggagatcctggtaaaccacatgctggccagccaggacccccg
ggaataacaggaccccctggtattgacggagtggctcgaaacggtaagcccggtgatcga
ggcccccagggctcggcaggagaagctggccgtcctggtaaggcgggccccactggtctt
ccagggttctgtgaggctgcagcctgcctagctgcctcggcctacacctcccccagacta
caggactccgccagggtcaagggccccggagtctaa
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