Oncorhynchus nerka (sockeye salmon): 115126301
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Entry
115126301 CDS
T07952
Name
(RefSeq) tetratricopeptide repeat protein 28-like isoform X1
KO
K24936
tetratricopeptide repeat protein 28
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
one03037
]
115126301
Cilium and associated proteins [BR:
one03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
115126301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_1
CHAT
TPR_8
TPR_2
TPR_10
TPR_MalT
TPR_16
RPN7
TPR_17
TPR_NPHP3
TPR_11
TPR_14
TPR_9
PUB
TPR_19
Motif
Other DBs
NCBI-GeneID:
115126301
NCBI-ProteinID:
XP_029511774
LinkDB
All DBs
Position
LG4:complement(29399569..29491492)
Genome browser
AA seq
2591 aa
AA seq
DB search
MEKHRPKKERFSLFGPRSSTRATNPHSSSSSSSTSARPIPPPLCQTDPHPCIPPGPTILS
KAEFLEAVRRSNQACQRGQYSLAVQLYGEALSADPQNCILYSNRSAALLHLGQYQTALDD
ALKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSP
LRDSLEPTYHQLQRMKLDKSPFVVVCVIGQELLTAGYHGASVVVLEAGLKIGTCSLKLRG
SVFSALSSAYWSLGNAEKSTGYMQQDLEVAKTLGDQSGECRAHGNLGSAYFSKVNYREAL
TNHRHQLVLAMKLKDREAASAALSSLGHVYTAIADYPNALASHKQCVLLARQTQCPLSEA
RQLGNMGAVYTALGDFTNAMQCHQQHLDIAKTLGNGPEEARAYSNLGSAHHSQRDFDKAV
SYHTLVLQLAQELEDRTIQMRAYAGLGHAARCMQDLERAGQYHQQQLDIAEELQDRAAQG
RASSNLGIIHQMKGEYDAALKLHKAHLCLVQELGDYAAQGRAYGNMGNAYNALRMYDQAV
RYHRQELHISLEVNDRPSQASTHGNLAVAYQALGAHDQALQHYLHHLTIARELRDTQSTA
RALGNLGNFHCCRGEYAPAVPYYQQYLTLSPQLQDLEGEGKVCHNLAYTHYCLGQYREAV
RYYEQDLALAKDLGDKLSQAKAYCNLGLAYKALGEYSKAEDCQRYLLSLAQALNNSQAVF
RALGNLGDVCVCRGDVAGAVRFYQQQLTLAQEVKEHKMEADAYSALGSAHRLLRQYDLAL
SFHQQELSARTALDDQRGQCGALGRLAAVHMALTDYPTAFQCYQAQLTLTQGLRDACVEA
QVQGNMGIAKMNMGVLEEAIGYFEQQLAMLEQLSGAECVLDRGRAYGNLADCYDSLGDFE
EAIKYCEMFLTVAQSLNHIQDQERAYRGLGNAHRSLGSLQQALVCFEKRLVVAHELGGSG
GGEGGSGGRKAQAQAYGELGDLHSQLGNYEQALSCLEHQLNIASTAGDRALEGEASGALG
GVYQLMGENETALQWHQRALEIAEETGSVRSQGRAYGNLGLTYEELGNYERAVACQEQHL
SVAAQNNDLTAKTLAYGSLGRTHHALQNYTQAVMYLQEGLRLAEQCGRREEEARIRHRLG
LSLWASNNLEEAQNQLYRASALFESIRHEAQLSSDYRLTLFDLQTSSYQALQRILVSLGH
YDEALAVAERGRTRAFADLLVERQQGHQPLTSDPYTPTPDPYSPVTVEHILNTVNSQKSL
VLYFSLAAGYLYSWLLAPGTGIVKFHEVYLGEGGAELQASEIQGGGVSGCQTLEQHITAA
REALGVDDYYSSGETESEAGDLLEQQFEERLSSASDPTGYLRMVSRNNLFNRDSRSSSCL
VSSTVSPVSETPSLPCRPPPSPLGKPPLRALHHLLIAPMEGVLMPSSGAVGRHRQLVLVL
EGELYLVPFALLKGSSSNEYLYERFNLLAVPSLGSLGPVAKSYPRRGAPFLYNGGGSMTA
VVGAPRLPSRVMERWLWGPLPSAHDEALRLGELLGCQPLTGTQATKDRVIAAMGQAECVH
FATHVSWKLAALVLSPSQDPGMDSGTRPKESAPCGGSLSSETGDVGARTEQQEDGSEDGG
SVCDAESVCDSPPLQEFLLTAADILDLRLPIKLVVLGSYQECVSRVTADGVVGLTRAFLA
AGVQCVCVSLWPVPMAASKVFTHTFYTALLNGTKASAALTEAMKTLQSSTHFSHPSNWAG
FMLIGCDVKLNSPSSLIGQALAEILQYPERARDSLRVLLHLVEKSLQRIQSGQSNAMYTL
QQSVENKVGGVPGWQALLSAVGFRLDCPGTGSGLPAAVFFPTADPGDRLQLCSTTLQSLL
GLPHSAFQALSKLVIAAETGEQLINKAVKNMVGMLHQVLVQQQTCDKEQEFSLAPIQVSI
SVQLWRLPGCHEFLAALGFDLCEAGQEEVLLKTGKQACRRTMHFALQSLLALFDSTELPR
RLSLDSSSSLESLSSSQCASVPLNLPQPPFSPPLGGPDSLSCDAISLYSLSSLASSLSFL
SRPEPAGSDGISQRSRQQELERHRGGVSHRHTGDVSRNRLTNHRGVGRGTEGEDKYEGFS
IISSEPLGGGGRECDTLPFPGGHRHIRGAGRGGAAGRGYPVSISSKGSVSTPTSPLKVLP
PPLAIPPSPNTHVKSQGSQSLSEGQVVSTEAVLSESDQSSTETDSTVKSQEDKPPFTPLD
PQELATRILEETQSHMQALESLQRGRTGRAGNGGGEKGLRGQECTPSSTLAPLTPTGGGL
GFRSSESSAFSRPSSRASLQARASPLSLSSPLSPLPATLSPISTPLLSTRPKPPSRCSSL
QKISSGYNSPALSSLSSSLSFSHPHPSPSRTPDPHIHAQLRLKYPSSPYTPHISHSPNSI
SISPSSGHPSPAGSLLSLAASPALSLAPSPALSYSSTGSTASRSSLAETSALHRLKQAGL
VDERVQAIHNLKTFWSNATQRQEVPGPGRVFRDGGKKMSTVQKDVLGLLHLSPRHGSNNK
NQDAEGPQSPINPLNGHRMLGSKPPVAPPPQTATDSSRGGSPGAPPHPVRLPSGNGFKFP
SPGKFFPSSKC
NT seq
7776 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacatcgaccgaagaaagaaaggttctcactcttcggccctcgctcttctacc
cgcgccaccaaccctcattcttcctcctcttcgtcctctacctctgctcgccccatccct
ccccctctctgccagacagaccctcatccttgcatccctcccgggccaacaatcctttct
aaggcagagtttctggaggcagtacgtcgcagtaaccaggcatgccaacgggggcagtac
agcctggcagtgcagctctacggtgaggccctgtctgctgaccctcagaactgcatcctg
tacagtaaccgctctgcggcccttctccacctgggacagtaccagaccgccctggacgac
gccctcaaagcccgcctgcttaaccccaaatggcccaaggcatacttccgtcagggtgtg
gccctgcagtaccttggtcgccatgccgacgccctggcagcgtttgcctctggtctagcg
caggaccccaagagtctccaactactggtgggcatggttgaggctgccatgaagtcccca
ctacgagactctctagaacccacctaccatcagctgcagaggatgaagctggacaagagt
ccattcgtggtggtgtgtgtgattggtcaggagctgctgaccgctggttaccatggcgcc
tcagtggtggtcctggaggcggggctaaagatcggcacatgctctctgaagctccgaggt
tcagtgttctctgctcttagctcagcctactggtcgctaggcaacgcagagaagagcaca
ggatacatgcagcaagacctggaggtggccaagacgctaggtgaccaatcaggcgagtgc
cgagctcacgggaacctaggctctgcctacttctccaaggtcaactacagggaggctttg
accaatcacagacatcagctggtcctcgccatgaaactcaaggacagagaggctgcgtcc
gctgcgctgagcagccttggccatgtgtacacagcgatcgcggactatcccaacgccctg
gccagccataagcagtgtgtgctgttggcacggcagacccagtgcccgctgtcagaggct
cgccagctgggcaatatgggcgctgtctacaccgcactgggagacttcaccaacgctatg
cagtgtcaccagcaacacctggatatagctaagaccctgggtaatggtcctgaggaggcg
cgggcgtacagtaacctgggcagtgcccaccacagccagagagactttgacaaggctgtg
tcctaccacaccctggtgctgcagctggctcaggagctggaggacaggactatacagatg
agggcttacgccggcctgggacatgctgctcgctgcatgcaggacttggagagggcaggc
cagtaccaccagcagcagctggacatagcggaggagctgcaggacagagctgcacaggga
cgagcttcatccaacctgggtataatccatcagatgaagggggagtacgatgcagcgttg
aagctccacaaggcccacctgtgtttggtccaggagctgggggactatgctgctcagggc
agggcctatgggaacatgggaaatgcctacaacgctctgaggatgtatgaccaagctgta
cgctaccaccggcaggaactgcacatatcactcgaggtgaatgaccgtccctcccaggcc
tctacccatggtaacctggctgtagcttatcaggcgctgggcgctcacgaccaggctctc
cagcactacctgcaccacctgaccatcgcacgcgagctacgagacacgcagagcacggcc
agggcactaggtaacctgggcaacttccactgctgtagaggggagtatgccccggcggtt
ccgtactaccagcagtacctgaccctgtcacctcagctacaggacctggagggagagggc
aaggtctgccacaacctggcctacacacactactgcttgggacagtacagggaggccgtc
aggtattatgagcaggacctggccctggctaaagacctgggtgataagttgtcccaggct
aaagcctactgtaacctgggtctggcctacaaagccctgggggaatatagcaaggctgag
gactgtcagagatacctgctgtccctggctcaggctctgaacaacagtcaggcagtgttc
cgtgccctgggaaacctgggggatgtgtgtgtgtgtaggggtgacgtggccggggcggtg
aggttctaccagcagcagctcaccctggctcaggaggtcaaagaacacaagatggaggct
gacgcctactcagcgctaggctctgcccacagactcctccgtcagtacgacctggccctg
tccttccaccagcaggagctgtctgcccgcactgctctagacgaccagcgggggcagtgt
ggtgctctgggccgcctggcagccgtccacatggccctgacagactaccccacagccttc
cagtgttaccaggcccagctcaccctgacacagggcctcagagatgcctgcgtggaggca
caggtccagggcaacatgggcatcgccaagatgaacatgggcgtcctggaggaggccatt
gggtattttgagcagcagttggccatgctggagcagctgagtggggctgagtgtgtgctg
gatagaggcagggcctacgggaacctagcagactgttatgactctctgggagactttgag
gaagctataaagtactgtgagatgtttctgactgtggctcagagtctcaaccatattcag
gaccaggagagagcctacaggggactgggtaacgcacacagatctctaggtagtctccag
caggcgttggtgtgttttgagaagcgtctggtggtggcccatgagctgggcggatcggga
ggtggagagggaggaagtggaggaaggaaggcccaggcccaggcatatggggagctggga
gacctacacagccagctggggaattatgaacaagccctatcctgcctggagcatcaactc
aacatcgcctccaccgcaggggaccgggcactagagggcgaagcgagcggggcgttgggt
ggagtgtaccagctgatgggagagaatgagacagctctacagtggcaccagagggcatta
gagattgcggaggaaacaggaagtgtgaggagtcaggggagggcctacgggaacctggga
ttgacttatgaggagctgggaaactacgaaagggctgtggcctgtcaggagcagcacctg
agtgtggcagcgcagaataatgacctcacagccaagacactggcgtatggcagcctgggg
aggacacaccatgcgctacagaactacacacaggctgtcatgtacctgcaggaaggtctg
cgtttagcagagcagtgtgggaggagagaggaggaggctaggatccgtcatcgtctgggc
ctgtcactgtgggccagcaacaacctggaggaggcccagaaccagctgtaccgagcttct
gccttgtttgagtcgattcgacatgaagcccaactcagctcagactacaggctgactctg
tttgacctgcagacatcatcataccaggctctccagaggatcctcgtcagcctgggtcat
tatgacgaggccctagccgtggcagagcggggtcggacccgggcgttcgccgacctcctg
gtggagcgacagcagggtcaccaacccctgacctctgacccttataccccgacccctgac
ccttactccccggtaaccgtagaacacatcctgaatacggtcaacagtcaaaagtcactg
gtgctgtacttctctctggccgcagggtacctctacagctggctactggcaccaggcaca
ggcatagtgaagttccatgaggtgtacctgggtgagggaggagccgagctgcaggcttca
gagatccaggggggaggagttagtggctgccagactctggagcagcacatcactgcagct
agagaggctctgggagttgacgactactacagcagcggtgagacagagagcgaagcgggt
gatctgttggaacagcagtttgaggaacggctgagctcagccagcgacccgacaggctac
ctacgcatggtttccaggaacaacctcttcaacagggatagtaggagttcttcctgtctg
gtcagttctacagtgtctccagtgagcgagaccccctctctaccctgtagacccccaccc
agccccctcggcaaaccccccctacgagcacttcaccacctgctcattgcacctatggag
ggggtgctgatgcccagtagtggtgcagtgggcagacatagacagctggtgttggtgtta
gagggagagctgtacctggttcccttcgctctgctcaaaggtagctcttctaatgagtac
ctgtatgagaggttcaaccttctagctgtcccatctttagggagcctggggcctgtagct
aagtcctaccctcgtcgcggggctcccttcctctacaacggtgggggttccatgactgca
gtagtaggggctccacgcctgccctccagggtgatggagcgttggctgtggggtccgctg
ccctcagcccacgatgaggccctccgcctgggggaactgctgggctgccagcccctcact
ggaacacaggccaccaaggaccgtgtgatagcagccatgggccaggcagagtgtgttcac
tttgctactcatgtctcctggaagctggcggccctggttctctcccccagccaggatcca
gggatggactctggaacacggcccaaggagagtgcaccgtgtgggggatcgctttcaagc
gagactggggatgtgggagcaaggactgagcaacaggaggatgggagcgaggacggagga
agtgtgtgtgatgcagagagtgtctgtgacagtccaccacttcaggagtttctgctcact
gcggcagacatactggacctgagactgcctatcaaactggtggtgctggggtcgtaccag
gagtgtgttagcagggtgacagctgatggggtggtgggtctgacccgtgccttccttgca
gcgggggtgcagtgtgtgtgtgtgtcactgtggcccgttcccatggcagcctccaaggtg
ttcacacacaccttctacacggcgctgctgaatgggaccaaggccagtgcagctctcact
gaggccatgaagactctacagagcagcacacacttctcacacccttctaactgggcgggc
ttcatgctgattggctgtgatgtgaagctgaacagcccctcgtctctgattggacaggct
ctggcagagatcctccaataccctgagagggctagagactccctgagagtacttttgcac
ctggttgagaagtctctccagcgtatacagagtggtcagagtaatgctatgtacaccttg
cagcagagtgtggagaacaaggttggtggcgtaccgggatggcaggccctgctgtcagcc
gtggggttccggttagattgtcccggtaccggcagtggtctccccgctgctgtcttcttc
cctacggccgaccctggagaccggctgcagctctgcagcaccactctgcagtcactacta
ggtctgcctcattcagcattccaggccctctctaaactggtcattgctgctgagactgga
gaacagctaatcaacaaggctgttaaaaatatggtgggaatgctccaccaggtattggtt
cagcaacagacatgtgacaaggagcaggagttctcattggctcccatccaggtatccatt
agtgtccagctgtggagacttcctggttgtcatgagttcctggctgcgctgggttttgac
ctgtgtgaggcaggacaggaggaggtgctattgaagactggtaaacaggcttgcagacgg
acaatgcactttgctctgcagtctctactggcactgtttgactccacagagctccccaga
cgcctcagcctggacagctcttcatctctagagtctctctcctcctcccagtgtgcctcc
gtcccccttaacctcccccagcctcccttctcgcccccgcttggtggcccagacagtctc
tcatgcgacgccatctccctctacagcctcagctccctcgcctcctctctcagcttcctg
tcccgccctgaacccgcaggaagtgatggcatcagccagcgttcgcggcagcaggaactg
gagcggcaccgcggaggagtctctcaccgacacacaggagatgtgtcgagaaacagatta
acgaatcacagaggagtaggcagagggacagagggggaggataagtatgaaggattctct
atcatcagcagtgagcctctgggaggaggggggagggagtgtgacaccttacccttccct
gggggacacagacacattagaggagcagggaggggaggggcggcagggagggggtacccc
gtctcgatctcctccaaggggagtgtcagcactcccacctcaccgctcaaagtcctcccc
ccgcccctggccataccccccagccctaacacacacgttaagtcccagggatctcagagc
ttgtctgaaggtcaggtggtcagtacagaggcagtcctctcggagtctgaccagtccagt
acagagacagacagcaccgtcaagtcccaggaagacaagccacccttcacccctctggac
ccccaggagctggccaccaggatcctggaagagacccagagccacatgcaggctttggag
agcctccagagggggaggacaggaagggcaggcaatgggggaggggagaaggggctaaga
ggacaagaatgtacaccctcctccaccttagcccccctgacccccactggaggtggtttg
ggcttccgttcgtctgaatccagtgctttcagcagacccagtagtagagccagcctacag
gcccgggcttcacctctctccctctccagccctctctcacccctccctgccactctctca
cccatctccacccctctcctctccaccaggcccaaacccccctctcgttgctcgtcctta
cagaagatcagctccggctacaacagcccggccctatcctccctctcttcctccctctct
ttctctcacccccacccctcaccctccagaaccccagacccccacatccatgcgcagctc
agacttaaataccccagctccccttacaccccgcacatctcacactcccccaatagcatc
tccatctcccccagctcaggccacccttctccagccggcagcctcctgtccctggccgcc
tccccagccctctccctggccccctcccctgccctctcctactcctctacaggctctacc
gcatcccgctccagcctggctgaaacctctgccctgcaccggttgaaacaggcaggcctg
gtggacgagagggtccaggccatccacaacctgaaaaccttctggtccaatgccacccag
aggcaggaggttcccggcccaggcagagtcttccgagatggggggaagaagatgagcacg
gtccagaaagatgtcctggggcttctccacctctctccaagacatgggtccaacaacaag
aaccaggacgctgaggggccccagagccccatcaacccgcttaacggacatcgaatgctg
ggttcaaaaccaccagtggcgcctcctcctcagactgctactgactcctccaggggaggt
agtcctggagcacccccacaccctgtcagactgccctctgggaatggcttcaagttcccc
tcgcctgggaagttcttcccctcctctaaatgctga
DBGET
integrated database retrieval system
