Oncorhynchus nerka (sockeye salmon): 115128236
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Entry
115128236 CDS
T07952
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115128236 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115128236 (exosc7)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115128236 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
115128236 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115128236
NCBI-ProteinID:
XP_029513774
EnsemblRapid:
ENSONEG00000021134
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All DBs
Position
LG4:39386375..39396012
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AA seq
291 aa
AA seq
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MATVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETDMVSNTDGSAKVTLGHTDVLV
GVKAEMGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVD
LKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTHKGTVTCVR
KVGGGSLDPESIFEMTETGKRVGKALHAPLMELLQEEESLGKKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtacaagtcagtgaggctgaaaaggtgtatattttgcatggtgtacgggat
gacttacgggttgatggacgaggatgcgaggactacagacacatggagattgagacagac
atggtgtcaaatacagatggctcagccaaagtgacactggggcatacagatgtgctagtg
ggagtcaaagctgaaatgggaaagccaaggcccatggtcccagatgaaggctacctggag
ttttttgttgattgctctgccaatgccacaccagaatttgagggtcggggtggtgatgag
ctgggcatggagttgagcaacaccctgtacaaagtgttcaacaacagatacagtgtggac
ctgaaaagcctctgcatcagcccaggggaacactgctgggtgctctatgtggacgtgctg
ctcctgcagtgtgatggaaatctttttgatgccatctctgttgcaattaaagcagctctc
ttcaatacaaaaattcccaaagtgcacatctctgaggatgaggaaggagggaaggaaata
gagctgtcagatgacccctacgactgcatgcgactcaatgtggagaacgttccctgcatc
gtgaccttgtgcaaggtgggtcataggcacgtagtggacgccacgctgcaggagaaggcg
tgttcagtggccagcctgatcatctccgtcacacacaaggggacggtcacctgtgtcagg
aaggtgggcgggggcagcctggacccagagagcatctttgagatgaccgagacagggaaa
cgggtagggaaagccctccacgcccccctcatggagcttctgcaggaggaggagagtctg
ggaaagaagagacagaaagtgggctttcttggttag
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integrated database retrieval system