Oncorhynchus nerka (sockeye salmon): 115130343
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Entry
115130343 CDS
T07952
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04518
Integrin signaling
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115130343
04518 Integrin signaling
115130343
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115130343
09142 Cell motility
04820 Cytoskeleton in muscle cells
115130343
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115130343
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115130343
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115130343
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115130343
Hyaluronan
Extracellular matrix or blood plasma proteins
115130343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
115130343
NCBI-ProteinID:
XP_029517297
LinkDB
All DBs
Position
LG1:2082698..2161361
Genome browser
AA seq
3005 aa
AA seq
DB search
MRKHRLLPLCALLGVLFAGLLPKLDAQGQEAQESADLVLLIDGSENVGAANFPRVRDLAM
KVIEGLDVGRDTIRVAVALYSADLEIQFFLNSYDTKAAVLDAVKALQFTGGDEANLGAAL
ENVAGSLLTPASGGRAEEGVPQALVVISAGPSNDDFSAGDRALKAASIITFGVVVGGEAT
AELETIATDKSFVLSAPDFRAVASLGDQLLPYVNAVAQRTIVIQNEFTEALEVGKRDIIF
LVDTTMGATLINSLREFIRKFVDTMPIGPDQVQVGVTQFSNTATDEIELNAYGSKEDLSA
ALGRLKPKQGQVVNIGAALDFVRTNTLRADKGSRIKQGVPQLVLLLTSKKSSDSVGQAAE
ALQRMGVLTLAAGSKTADEQELKQIAFDESLVFMLKDFRALIRNPKLIVSPLSTLSGVVV
IEGPTEPVVEITTVQTQRVVRDIVFMVDGSSYIGGANLPYVRDFIASVVNQLDVRPDRVR
IGLMQFAENPKIEFYLNTHNTKQDVLASLGELRLMGGSALNTGAAMDYALTNMFQASTGS
RKRQGVQQVLLLITGGPSQDEVKRIADKVAVAGVLTFTVSAGQADEDYLKTVAFVPNLAY
HESRFADLPSVVEQIMTPLTTVVGDTDITEIEITEEPAVIGGERDVAFLIDGSDNVRADF
PYIRDFIIKVIEPLDIGQDRVRISVVQHSERPAPNFYLNTYKDKAEVLRAVNDLRLSGGR
SLNTGMALKFMKDTILSPVHGSRAAQNVPQFLIVLTGGKSKDSVKESAGALKTDGVVPFG
VGVKDADPKQIEAISHNPSFAFNVKEFSQLSTVQQKLNSYVSLSKEKLKVVLEEAESQGP
KKDIVFLVDGSDGVGREFPIIQEFISSIVKNLNVGENKIRIGVVQYGDSPNADIYLNSHT
TKEGVMNAVKGLRQRGGRERNLGQAVEFVSSEVLNVRRGGRKEEGVPQFLIVVSGGRSTD
DIRRPATSLKKSGVLPFSIGTRDVNSQELQVVSYVPNFAYTVDDLPGLYTVQDKLISTLT
EMSDDDIARLRPVFPTPDVIVPTGGEKRDVVFLIDGTTAVRSEFPAIRDMIGRVVEKLDV
GLDRVRVSVVQYSDDAKTEFLLNEHSTKDEVRQATRKIQSRGGNRLNTGRALDWVSKNIY
QRSAGSRIEEGVPQFLILVTGGKSNDDVSGPANQLKTNLVAPLAIGAKNADPNELRQISL
KPEFAYSINNFGQLPTVEQQLIASVNTMTTTDISTSFVPPVLDIANLNMGRKDIIFLIDG
SDTTGSSGIAHIRDFILNIVQQLDVQPDQVRIAVVQYSDKVKTDFSLNSHNNKPAVLSAI
KRLRQQGGRSSDLAKAIEYVIRNELKSSAGVRLAEASQHLVVLTGGRSPTDVSVYGPLLK
GSRVNCIGIGAGGADSRQLNQIATSSADVLQVPTFPGLPTIKERFIARLNGTIPEEAPTE
IDDPTSGLPKAKAADIVFLVDGSINLGKDNFKEVMEFILNLVDLFFTERDNLQIGLAHYA
TDVTDVFYLNTYKTKDDIINALSRTEYKGGRRINTGAAIRHVQENHFIKDKGSRKDEGIP
QILMIVTGGKSSDDGKTAALGLKATGVRIYAVGVGDIEDELNNLASEASTVARASTFMEL
SELNEQILETLDDEVKGIKLCTGVSQEPSKACSLEVLVGFDVSSQNIFQAQRILESKMGA
ILQRITKMTGISCSSGQIPSIQVGILAMDSASEPVHLEFTDNADMLFEAFRALRNRGPYV
LNAKTISAYGSRFKSRAADAVKVVIHLTDGLDGQYNEMKRGVEELKISGVNSFILVGLER
VPRFEEAVLLEFGRGFRYTRPLRVNVMDLDYELLEELDNIAERECCAVPCKCTGTRGDRG
AVGLGGSKGSPGGAGGAGHPGDEGGPGDRGPPGVNGTQGFQGCPGQRGIKGGRGYSGEKG
EYGEIGLDGINGEEGKSGVAGPPGDRGHSGRRGPKGTKGHAGDIGDTGIRGDPGTTGQDN
NVAGPKGDPGDVGPVGEPGEDGKKGGPGEPGRTGSDGRRGPPGQAGNPGKPGGDGVQGEP
GIGGSRGQAGPIGAPGTRGEDGNPGPRGPGGAQGTPGDKGRRGALGRKGEPGEPGPKGIV
GPLGPRGEPGEDGRDGFGIAGPKGRKGDEGFPGFPGPKGAAGDGGNNGGPGPIGNRGQRG
VSGEIGTPGQKGEVGYPGPYGQKGPRGPGVVQCDLVKKIRDNCPCCYGQQECPLYPTELA
FALDASDGVGRPAFNNMRDAVLRLVGNITISESNCPRGARVALTLYNNEVTTEIRFADAL
KRRSLVQRVEGLQALQTRKQRSLETAMNFLAQNTFKRVRSGFLMRKVAIFFVNGPVKDQR
AVSAAALRLYDSGIASVFLVNKEDGQLTRALKMNNTGSALGQVIVLPNPGSAQYNSAIQK
VMSCHICLDSCAPDQMCDYVPPQQSRDRRSSTTDVDIDMAFVMDSSETTYPTVFTEIKRY
VAHIVEQLEVSSDPMASIHHARVAVIQQAPYEFLRNSSGSPIRVDVGLTDHRSAQDIRNF
LLDKTPQLEGGRALAAAIEHTVEQVFERAPHQRDLKVLTLFVTGPVEEDEERLVAVATDA
KCKGYFLVILGVGEKLSAGDARVMMRMASEPSDVFFKRLTSTSHFYDKHIQNFGRLLPKY
LSIENAFYMSPEVSKNCHWYQSDQPFPKFPFPKSHHSQEKHQKHHENHQAVHPRKHKDQE
ELHVANTTSSGLTLRWASPDPKLIAYFEVVVTRLRDHTLVLRRNVTGTELTVGGLESAQT
YHAVVTTRTAQGHVAATHKGIITTKAAAEHKIASPMEVTGIIATTPLDKPEIANELTDPC
SLDFDPGLACKNHQAKWFFDRKNGICTQFWYGGCEGNGNRFETEAQCLKCCMRSEPEQQV
EQLQTEILSVPAALTGVEICQLPKEEGACAKFVLKWHYDALSKSCSRFWYGGCGGNQNRF
ETQEECEKACGKAALPRGQKAWDWLDESRANPERHSQRRVRMKGKRRKGSLGAPVNQGVI
AAIRT
NT seq
9018 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacaccggctgttaccgctgtgcgctcttctgggtgtcctgttcgcaggactt
ctgcccaaacttgatgcccagggtcaggaagcacaagagtcagctgaccttgtactctta
attgacggatctgagaacgttggagcggccaacttcccccgcgtgcgcgatttggctatg
aaagtcattgagggcctcgatgtgggcagggacacaattcgggtggctgtggctctgtac
agcgcggacctagagattcagttctttctaaatagctatgacaccaaagccgctgtcctg
gacgctgtgaaggcccttcagttcacaggcggcgatgaggctaaccttggagccgccttg
gagaatgtcgccgggagcctgttgactccggcatcagggggcagggcagaggagggggtg
ccccaagctctggtggtgatcagtgccgggccgtccaatgacgatttcagtgcgggtgac
agggctcttaaggcagcgagcattatcacgtttggcgtggtggtcggcggcgaggctaca
gccgagctggagactatcgccacagacaagagctttgttctgtcggcccccgatttcagg
gcagtggcaagcttgggtgaccagttgctaccatatgttaatgcagtggcccagcgcacc
attgtcattcagaatgaattcacagaagccttggaagtgggaaaaagggatatcattttt
ctcgttgacaccactatgggtgccacattgatcaactctcttcgtgagtttatcagaaag
tttgttgacaccatgccgatcggaccggatcaagtgcaagtgggtgtgacccagttcagc
aacactgccacggatgagattgagctgaacgcatatggatccaaggaagacctgagtgca
gccctgggtagactcaagccaaaacaaggacaagtggtgaacatcggggcggccctggac
tttgtgaggaccaatacgctgagggctgacaaggggagtcgtattaagcagggcgtgccc
cagctggttctgttgttgaccagtaagaagtccagcgacagtgtggggcaggctgctgag
gcactgcagcgcatgggggttctgaccctggctgctggctctaagacggccgatgagcag
gagctgaagcagattgcctttgatgagagcttggtgttcatgctgaaggacttccgcgca
ttgatccgcaaccccaagttgattgtctctcccctctccactctatcgggggttgtggtg
attgagggaccgacagagccagtggttgaaattacaacagtgcagacccagcgagtagtc
agagacatcgtctttatggtggatgggtctagctacattgggggtgccaaccttccgtac
gtgcgggatttcattgccagtgtggtaaaccagctggacgtgcggcccgacagggtgcgc
atcggtcttatgcaattcgcagagaacccaaaaattgaattctatctgaacacgcacaac
acaaagcaagatgtgctggctagcctgggtgagctcaggctaatgggagggtctgctttg
aacacgggagcggcaatggattacgcacttaccaacatgttccaggcctcgactgggtca
cgtaagaggcaaggtgtccaacaggtgcttctcctgatcactggaggcccatcccaggat
gaggttaaaaggatagcagacaaagtggccgtggcgggtgtactgaccttcacagtcagt
gctggccaggcagatgaggactacttgaagacggtcgcttttgttccaaacttggcttac
catgaaagcagatttgctgacctgccaagtgttgttgaacagatcatgactcctttgact
actgtggttggagatacagacatcacagaaatagaaataaccgaggaacctgcagtcatt
ggaggcgagagggatgttgcgttcctgattgacggatctgataatgtccgagcagatttc
ccctacatccgggactttatcatcaaagtcattgagcctcttgatattggacaagataga
gtgcggatttcagttgtccagcatagtgagaggccagctcccaatttctacctgaataca
tataaggataaggctgaagttttaagggctgttaatgatctaagactgtctggtggacgg
agtctgaacaccggaatggctttgaaattcatgaaggacaccatcctgtccccagttcat
ggtagtcgggcggctcaaaatgtaccccagtttttgattgttttgaccggaggcaagtct
aaggatagcgtgaaggagtctgctggtgctttaaagacagatggagtggtaccatttggc
gttggtgtcaaggatgcagaccctaagcaaatcgaggctatttctcacaacccatccttt
gctttcaacgtgaaggaattcagccagctcagtacggtccaacaaaagctcaatagctat
gtgagcctttccaaggaaaagctgaaggtcgtcttggaggaagctgagtctcagggtccc
aagaaggatatcgtcttccttgttgatggctcagatggcgttggaagggagttccccatc
atccaggagttcatcagctcaatcgtgaagaacctcaacgtgggcgagaacaagatcagg
attggtgtggtgcagtatggcgactcccccaatgcagatatctacctaaactcccacaca
accaaggagggtgttatgaatgctgtcaagggactgaggcagcgaggtggccgggaacgt
aacctgggtcaggcagtggagtttgtcagcagtgaagtgctgaatgttcgacgtggcggc
aggaaggaggagggtgttccacagttcctgattgtcgtttctggtggaaggtccacagat
gatatccgtcgacctgcgacctcactgaagaagtcaggcgttttgcccttcagcatcggg
accagagatgtaaactctcaggagcttcaggttgtttcctatgttcccaactttgcatac
actgtggatgacctccctggcctgtacacagtccaggacaaactgatctccacgctcaca
gagatgtccgatgacgacattgccaggctacgtcctgttttcccaactccggatgtcata
gtacccactggcggagaaaagagggatgtggttttcctcattgacggcacaacagctgtg
cgcagcgagttccccgccatccgtgacatgatcgggagggtcgtggaaaagctggacgtg
ggtctggatcgggtgagggtgtcagtggtgcagtacagcgacgatgccaaaacggagttc
ctcttgaacgagcactccaccaaagacgaggtccgccaagccacgaggaagattcagagc
aggggtggaaaccgtctaaacactggccgtgccctcgattgggtctccaagaacatctat
cagagatcagccggtagccgcatcgaggagggtgtgcctcagttcctcattctagtcacg
gggggaaagtccaacgacgacgtctctggaccagccaaccagctgaagaccaacctggtt
gcccctcttgccatcggggcaaagaatgccgaccccaacgaactgaggcagatctccctg
aagccagaattcgcctactccattaacaactttgggcagcttccaacagtggaacagcag
cttattgcttcagtcaacaccatgaccaccactgacatctccactagttttgtccctcct
gttttggatattgctaacctcaacatggggaggaaggacatcatcttcctcatagacggc
tcggacaccacagggtccagtggcatcgcccacatccgtgacttcatcctcaacatcgtt
cagcagctggatgtgcaacctgaccaggttcggatcgctgttgtccaatactctgacaag
gtcaagacggatttctctctcaattcccacaacaacaagccagctgtgctctctgccatc
aaaagattacgccagcagggtggcagatcgtccgatctagccaaagccatcgagtatgtg
atcaggaacgagctgaaatcctcagcgggtgtccggcttgcggaggcctcccagcatcta
gtggtcctcaccggcgggaggtcccccactgacgtttctgtgtatggccctctgctcaaa
ggctctcgggtcaactgcattggcattggggctggcggagcagactccaggcagctcaac
cagattgccaccagctctgccgatgttcttcaggtacctactttccccggcttgcctacc
attaaggagaggttcattgccaggctcaatgggacaatccccgaggaggcccctacagaa
attgatgacccaacttcaggactcccgaaagccaaggctgctgacatcgtgttcttggtg
gatggctccatcaaccttggcaaggacaacttcaaggaagtgatggagtttatcctgaac
cttgtagacctcttcttcaccgagcgtgacaacctgcagattggcctggcccactatgcc
accgacgtcaccgacgtcttctacctcaacacctacaagaccaaggatgacatcatcaac
gcccttagtcgcacagagtacaagggtggccgcaggatcaacacgggtgctgccattcgc
cacgtgcaggagaaccacttcatcaaagataaaggcagcaggaaggatgagggcatcccc
cagatcctgatgatcgtcactggcggaaagtcatctgacgatggcaagactgccgctctg
gggttgaaggccaccggtgtccgtatctacgccgttggcgtgggcgacattgaggacgag
ttgaacaacctggcaagcgaggcctccacggtggccagggcgagcacgttcatggagctc
tctgagctcaacgagcagatcttggaaacattggacgacgaggtgaagggaatcaagctg
tgcactggcgtgagccaggaaccctcgaaagcctgcagtctggaggtgttggtgggcttc
gacgtgtcctcgcagaacatcttccaggcccagaggatcctggagtccaagatgggtgcc
atcctccagaggatcaccaagatgacgggcatcagttgctcatcgggacagatcccctcg
atccaggtgggcatcctggccatggatagcgcctcggaacctgtccacttggagttcacg
gacaacgccgacatgctgtttgaggcattccgggccctgcgcaatcgcggcccctatgtc
ctcaatgccaagaccatttccgcatacggttcgaggttcaaaagccgagccgcagacgca
gtcaaggttgtgatccatctgactgacggtctggatggccagtataacgaaatgaagaga
ggagttgaagaacttaagatttcaggtgtgaacagcttcatcctggtgggtctggagcgg
gtacccaggtttgaggaggctgtgctgctggagtttggccgaggcttcaggtacaccaga
cccctccgagtcaatgtcatggacctggactacgagcttctggaggaactggacaacatt
gctgagagggagtgctgtgcagtgccatgtaaatgcaccggcacaaggggagaccgagga
gcagtcgggcttggaggatccaagggcagcccaggtggagcaggcggagcaggacatccc
ggagatgagggaggacccggagacagaggtcctcctggtgtcaatggaacgcaaggtttc
cagggctgtcctggacagaggggcatcaagggcggtcgtggatactctggagaaaagggg
gaatatggagagatcggcctggatggcataaacggagaagagggcaagagtggagtcgct
ggacccccaggagacagagggcactctgggagaaggggacccaaaggaactaaaggacat
gcaggagacatcggggatacaggaatcagaggagatcctggaaccacaggtcaagataac
aatgtggctggacctaaaggagacccaggcgatgtcggcccagtgggagagccaggggag
gatggtaagaagggaggccccggtgaaccaggcaggacgggttctgatggtagaagaggc
ccacctggacaagctggaaaccctggcaaacccggaggcgatggtgtgcagggagagcct
ggtattggaggatccagaggccaagctggaccaatcggtgcacctggaaccagaggtgag
gacggaaaccctggaccaaggggtccaggaggagcccagggaacccccggagacaagggc
aggagaggagctctgggtcgcaagggtgagccaggagagcccggaccaaaaggcatcgtg
ggacctctgggacctcgtggtgagcctggcgaagatggtcgagatggatttggtatcgca
gggcccaaaggaagaaagggtgatgagggcttcccgggattcccaggaccaaagggggcg
gcaggtgatggaggaaacaatggcggaccaggacccataggaaaccgtggccagaggggt
gtttcaggtgaaatcggtactccgggtcaaaagggagaggttggataccccgggccttat
ggccagaaaggaccgagaggacctggcgttgtgcaatgtgaccttgtgaagaaaatcaga
gacaactgtccttgctgctatggtcaacaggagtgccctctctaccccactgagctagcc
ttcgccctggacgcctcagacggcgtgggtcggcctgccttcaacaacatgcgtgacgcc
gtgctccgcctggtcggcaacatcaccatctccgagagcaattgcccacgcggtgcccgc
gtggccctcaccctctacaacaacgaggtgaccaccgagatccgctttgccgatgcgctg
aagcgccgctctctggtgcagcgtgtggaaggcttgcaggcattacagacgcgcaaacag
cgcagcctggagacggccatgaacttcctggcacagaacaccttcaagagggtgcgcagc
ggcttcctcatgaggaaggtcgccatattctttgtcaacgggccagtgaaggatcagcgg
gcagtcagcgccgcggccctccgtctctatgactctggcatcgcctcagtgtttctggtc
aacaaagaggatggccagcttaccagagccctgaagatgaacaacactgggtcagcactg
ggtcaggtgatcgtactgcctaatcccggaagtgcacagtacaactcggctatccaaaag
gtcatgagctgccacatctgcctggactcctgtgctccagaccaaatgtgtgactacgtc
ccccctcagcagtcgagagacaggaggtcctccaccaccgacgtggacattgacatggcc
ttcgtcatggacagctccgagaccacctaccccactgtcttcaccgagattaaacgctat
gttgctcacattgtagagcaacttgaagtctcgtcagaccctatggcatccatccaccac
gctcgtgtggctgtgatccagcaggcaccctacgagttcctgcgcaacagcagcggctcg
ccgatccgcgtggacgtgggtctgaccgaccaccgctcggcccaagacatccgcaacttc
ctcctggacaaaacgccccaactggagggtgggcgggcgctggcggcagccatcgagcac
acggtggagcaggtgtttgaaagggcgccccaccagcgtgacctcaaggtgctgacattg
ttcgtgacaggcccagtggaggaggatgaggagcggctggttgccgtggccaccgatgcc
aagtgcaagggctatttcttggtcatcctgggcgttggcgagaaacttagtgctggggac
gcccgcgtgatgatgcgcatggccagtgagccctccgacgtcttcttcaagaggctgacc
agcacctcacacttctacgacaagcacattcagaactttggccgactgctgcccaagtat
ctcagcattgagaacgctttctacatgtcccctgaagtctccaaaaactgtcattggtac
cagagtgaccagccattccccaagttccccttccccaaatcacaccacagccaagagaaa
catcaaaaacaccatgaaaatcaccaggcagtccatccaagaaagcacaaagaccaagag
gagttgcacgtagccaacaccacttccagtggcctgaccctgcgctgggccagcccagac
cccaagctcatagcctacttcgaggtggtggtgacgcgcctgcgcgaccacacactggtg
ctgaggaggaatgtgacaggcacggagctcactgtaggcggcctggagagcgcccagacc
taccacgccgtggtgaccacacgcaccgcccagggccacgttgcggccacacacaaaggc
attattaccaccaaagcagcagcagagcataagatcgcttctcccatggaggtgactggt
atcatagccactacaccactggacaaaccagagattgctaacgagctcacagacccatgc
tctcttgactttgaccctggattggcgtgcaaaaaccatcaggctaagtggttctttgac
agaaagaatgggatctgtacccagttctggtatggtggttgtgaaggcaatggcaatagg
ttcgagactgaagcccagtgcttgaaatgctgcatgaggtcagaacctgagcaacaagtg
gaacagcttcagactgagatcctttcagttcccgcggccttgacaggagtggaaatctgt
cagctccccaaagaggaaggggcatgcgcaaagtttgttctcaagtggcactacgatgca
ctcagcaagagctgctcacgcttctggtacggaggctgtggcggcaaccagaatcgcttc
gaaactcaagaggagtgtgagaaggcctgtggaaaagcagctctgcctcgagggcaaaag
gcatgggattggttggatgaaagccgcgcaaaccccgagcggcactcacagcgacgagtg
agaatgaaaggaaagagaagaaaaggctcgctaggtgcacctgtcaaccaaggagtcatt
gccgcaatacgaacatag
DBGET
integrated database retrieval system
