Oncorhynchus nerka (sockeye salmon): 115142918
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Entry
115142918 CDS
T07952
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
one04020
Calcium signaling pathway
one04260
Cardiac muscle contraction
one04261
Adrenergic signaling in cardiomyocytes
one04270
Vascular smooth muscle contraction
one04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115142918
04020 Calcium signaling pathway
115142918
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
115142918
09153 Circulatory system
04260 Cardiac muscle contraction
115142918
04261 Adrenergic signaling in cardiomyocytes
115142918
04270 Vascular smooth muscle contraction
115142918
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115142918
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115142918
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
115142918
NCBI-ProteinID:
XP_029538627
EnsemblRapid:
ENSONEG00000002375
LinkDB
All DBs
Position
LG15:24790561..24823029
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AA seq
1832 aa
AA seq
DB search
MAESGGEPNLQSYIMDEETLKRKQKEKLKKLLATGGNPRPARSLFFLTLKNPFRKAAINI
VEWKPFEIIILLTIFANCVALAVFLPMPEEDSNNTNSNLESLEYIFLIVFSIECFLKIIA
YGFLFHENAYLRNCWNILDFVCVSVGLFAVIGDFITYISGVEAQPGDKGGGFDMKALRAF
RVLRPLRLVSGVPSLQVVMNSILKSMLPLFHISLLVFFMVTIYAIVGLELFKCKMHKTCY
YTGTNIIATVENEKASPCAQAGNGRRCTINGTECRAGWAGPNNGITHFDNLGFAMLTVYQ
CITTQGWTDVLYWVNDAIGMEWPWMYFLTLILVGSFFVLNLVLGVLSGEFTKEREKGKAR
GEYTEMRETQQLDEDLKGYMEWITQAEVMDADGEGQGLLTLEDGESEAGSLKDMDTMQKI
MYYYKLARKWNIFFRRKCLVYVKSRMFYWWVILLVFLNTLAIATEHHKQSQKLTEWQDTA
NKVLLSLFAIEMFMKMYALGLQQYFMSLFNRFDCFVVSTGILELVLVGMDVMTVMGISVL
RCIRLLRLLKVTKYWTSLSNLVVSLLNSTPSIACLLLLLFLFIVIFSLLGMQVFGGKFNF
PNAPKPRSTFDSFPQALISVFQILTGEDWNSVMYDGIMAHGGPTMPGILVSIYFIILFVC
GNYILLNVFLAIAVDNLAEAESLTMAQKEKSEEKKRKKLLRANMPDKATEEKALLAKKLA
AERAKIEGIPTTAKLRVDEFESNVNEIKDPFPPADFPGDDEEEEPDIPDTPRPRPMADLQ
LKEEVVPIPEASSFYIFSSDNKIRKLCHRIINATAFTNIILLFILLSSISLAAEDPIDPM
SFRNQVLASADVVFTSVFTVEVVLKMTVYGAIMHPGSFCRNSFNILDLIVVSVSLLSMLM
ESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLDFMFACI
GVQLFKGKFYACTDPDKMTEEECKGNYIRYQEGAIHPMTIHKREWINAELNFDNILEGML
ALFTVSTFEGWPKLLYKAIDSNMEDVGPVYNNRIAISIFFIVYLILIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRACVEYALKARPLRCYIPKNPYQYNVWYIVTSCYFEYLMF
LLIMLNTMCLGMQHCNQSTHVTDLSDMLNVIFTVLFTVEMVLKLMAFKAKGYFGDPWNVF
DFVIVIGSVVDVILSEVDAALASSGGLYCLHGCAEVNPMQAIADSENARVSITFFRLFRV
MRLVKLLNRSEGIRNLLWTFIKSLQALPYVALLILMLFFIYAVVGMQIFGKIALIDGTYI
NRNNNFQTFPHAVLLLFRCATGEAWQEVMLACLYGKRCDPKSDYLPGEEMTCGASFAIIY
FMSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKKIWAEYDPEATGRIKHL
DVVTLLRRIQPPLGFGKFCPHRVACKRLVSMNMPLNSDGTVTFNATLFALVRTALKIKTE
GNFEKANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQDYFRKLKKRQ
EEYYGFRPTKKNAKNEIQAGLRSIEEEEAPELQRAISGDLMNEEEMDRAMEDAAEEGIFR
RAGGLFGNHVDSFTMEEGTRDPNATQVTSQRPLQMSRSDDGEATSSPAYHANEDFFPSTP
NKTNNNNVNNNAGESFSCGTYDRVQVYTISTSRSPPDRDWQLQIVAGPRQDAEPHREPLS
LRQAQGPDSAFDTLIQEVLINGGLESLARDPRFVSVTKREMAETLNFDPVDMESSATELM
DGRRGSVVTPPIRPPRRSQRKANQSTTPRDVV
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagtggcggcgagcctaacctgcagtcctacattatggacgaggaaactctg
aagaggaagcagaaggagaagctgaagaagctcctggccacggggggaaaccctcggccc
gcacgctccctcttcttcctcacattgaagaaccccttccgcaaggctgccatcaacatt
gtggaatggaaaccttttgagatcatcatcctgctgaccatctttgccaactgtgtggcc
ctcgctgtgttcctgcccatgcctgaggaggacagcaataacaccaacagcaacctggaa
agtctggagtacatcttcctcatcgtcttctccatagagtgctttctaaaaataatagcc
tatggatttctatttcacgagaatgcgtatctgcggaactgttggaacatactggatttt
gtctgtgtatctgtggggctgtttgcagtcatcggggacttcatcacctatatcagtggt
gtggaggctcaaccaggggacaagggaggaggcttcgacatgaaggccctcagggcattc
agggtgctccggcccctcaggctggtctctggagtccccagcctgcaggtggtgatgaac
tccatcctgaaatccatgctacctctgttccacatctccctgctggtcttcttcatggtc
accatctacgccatcgtgggactggagctgttcaagtgcaagatgcataaaacctgctac
tacacaggcacaaatatcatagccacagtggagaatgagaaggcatctccatgtgcccag
gccggtaatggtcggcgctgcaccatcaacgggacagagtgtagggcgggatgggccgga
cccaacaacggcatcacacactttgacaacctgggcttcgctatgctcactgtctaccag
tgcatcactacccagggctggaccgacgtgctctactgggtgaatgatgccatcggtatg
gagtggccgtggatgtactttctaacactcatcttggttggctccttctttgtactcaac
ctggttctgggcgtgctcagtggtgaattcactaaggagcgagagaagggtaaggcgcgt
ggagagtacacagagatgagggagacccagcagctggatgaggatctgaagggctacatg
gagtggatcacacaggccgaagtcatggacgccgacggggagggacagggcctgctaacg
ctggaggatggagaatccgaggcagggagcctaaaggacatggacaccatgcaaaaaatc
atgtactactacaagctggctcgtaaatggaacattttcttccggcgtaagtgtcttgtg
tatgtgaagtcccgtatgttctactggtgggtgatccttctggtgttcctgaacacgctg
gccatcgctactgaacaccacaagcagtcccagaaactcaccgagtggcaagacactgcc
aacaaggtgctgctgtctctgttcgccattgagatgtttatgaagatgtacgccctgggt
ctccagcaatacttcatgtctctgttcaaccgcttcgactgcttcgtggtctccaccggc
attctggaactcgtcctggtcggcatggacgtcatgaccgtcatggggatctctgtgctg
cgctgcattcgactactcaggctgctcaaagtaaccaagtactggacgtctctcagtaat
ctggtggtgtccctgctgaactcaaccccctccatcgcctgcctgctcctcctcctcttc
ctcttcatcgtcatcttctctctgctgggcatgcaggtgttcggggggaagttcaacttc
cccaatgcgcccaaaccccgcagcacctttgacagcttcccccaagctctcatcagtgtc
ttccagatcctgacgggggaggattggaactctgtgatgtatgatggcatcatggcgcat
ggcggtcccaccatgcccgggatcctcgtcagcatctacttcatcatcctcttcgtctgc
ggaaactacatcctgctgaatgtgttcctggccatcgctgtggacaacctggcggaggct
gagagtctgaccatggcccagaaggagaagtctgaggagaagaaacgcaagaagctgctc
agggctaacatgcctgacaaggccacagaggagaaagccctcctggccaagaagcttgca
gcggaaagagccaaaatagagggcatccctaccacagccaagctgagagtggacgagttt
gagtccaacgtgaacgagatcaaggaccccttcccgcctgctgacttccctggtgatgat
gaggaggaggagcctgatatccctgacaccccgaggccacggccaatggcagacctgcag
ctgaaggaggaggtggtgcctattccagaggccagctccttctatatctttagctctgat
aacaagatccgtaagctgtgccaccgcatcatcaacgccaccgccttcaccaatatcatc
ctcctcttcatcctcctcagcagcatctccctggctgccgaggaccctatcgaccccatg
tccttcaggaaccaggtgctggcctccgctgatgtggtcttcacctcagtgttcactgtg
gaagttgtcctcaagatgaccgtatacggcgccatcatgcaccccggctccttctgccgg
aactcctttaatatcctggatctgattgtggtcagcgtatccctcctctccatgctcatg
gagtccagtgctatctctgtggtgaagatcctcagggtgttgagggtgctgaggccccta
agggccatcaacagggccaagggcctcaagcatgtggtccagtgtgtttttgtggccatc
aaaactattggcaacatcgtgctggtcaccatgctgctagacttcatgttcgcctgcatt
ggagtccagctcttcaagggcaaattctatgcttgcacagatcctgacaaaatgacagag
gaggagtgcaagggcaactacattaggtaccaggaaggtgccatccatccgatgaccatc
cataagagagaatggatcaatgcagagctcaactttgacaacatcctcgaaggcatgctg
gctctcttcactgtctccaccttcgagggctggccaaagttgctctacaaggccatagac
tctaacatggaggatgtgggtccggtgtacaacaaccgcatcgccatctccatcttcttc
atcgtctacctcatcctcatcgctttcttcatgatgaacattttcgtgggtttcgtcatt
gttacatttcaggagcagggagagcaggagtacaagaactgcgagctggataagaaccag
cgtgcgtgtgtcgagtacgccctgaaagcccggccgctgcgctgctacattcctaagaac
ccgtaccagtacaacgtgtggtacatcgtcacctcctgctactttgagtacctgatgttc
ctgctcatcatgctgaacaccatgtgtctggggatgcagcactgtaaccagtcaacccat
gtgaccgacctgtcagacatgctgaacgtgatcttcactgtgctcttcactgtggagatg
gtcctcaaactcatggccttcaaagctaagggttactttggagacccttggaacgtcttt
gactttgtcatcgtcatcggcagcgtcgttgacgtcatcctgagtgaagtcgatgcagcc
ctggcctcctctggaggactatactgtctccacggctgcgctgaggtgaacccaatgcaa
gcaatagcagattctgaaaatgcccgtgtgtcaatcaccttcttccgactgttccgtgtg
atgcgtctggtgaaactgctgaaccgttctgaagggatccggaaccttctgtggaccttc
atcaagtccttacaggccctgccctacgtcgccctgctcatcctcatgctgttcttcatc
tatgctgtggttgggatgcagatatttggtaagatagcgctaatagacgggacgtacatc
aacaggaacaacaacttccagacgttcccccatgctgtgctgctgctcttcaggtgtgcg
acaggtgaggcgtggcaggaagtaatgttggcgtgtctgtatgggaagaggtgtgaccct
aagtcagactacctgcctggggaggagatgacctgtggagccagcttcgccatcatctac
ttcatgagcttctacatgctctgtgccttcctgatcatcaacctgtttgtggcggtcatc
atggacaactttgactaccttacacgtgattggtccatcctgggtcctcatcacctggac
gagtttaagaagatctgggcagagtacgacccagaggccacggggcgtattaagcacctg
gacgtggtgactctgctgcgtaggatccagcctcctctgggttttggaaagttctgcccc
catagagtagcctgcaagagactggtgtccatgaacatgccactcaacagtgacggaacg
gtcacctttaacgctacgctgttcgcactggtcaggaccgcgctgaagatcaagactgaa
ggcaactttgagaaggccaatgaggagctgagggccatcatcaagaaaatctggaaacgc
accagtatgaagctgctggaccaggtcatcccaccaatcggagatgatgaggtgaccgtg
gggaagttctacgccaccttcctgatccaggactacttcaggaagttgaagaagagacag
gaggagtactatggcttccgccccaccaagaagaacgccaagaatgagatacaggcaggt
ctgaggagcattgaggaggaggaggctccagagctgcagagagccatctccggagacctg
atgaacgaggaggagatggacagagccatggaggacgcagcggaggagggtatcttcagg
cgggcgggcggtctgtttgggaaccacgttgattccttcaccatggaggaaggaacccgt
gaccctaacgctacacaggtgaccagccagcgtcccctgcagatgagcagatcagacgac
ggggaggctaccagttcacctgcctaccatgcaaacgaggacttcttcccctcaacgcct
aacaaaaccaacaacaacaatgtcaacaacaatgccggggagagcttttcttgtgggaca
tatgaccgggttcaggtctataccatctcaaccagcagaagtcccccagacagagactgg
cagctgcagatagtagctggacccaggcaggacgctgagccccacagagagccgctcagc
ctccggcaggcccagggcccagacagcgccttcgatacacttatacaggaggtcttgata
aacggtgggctggagagcttggccagggaccctcgttttgtgtcggtgacgaaacgggaa
atggctgaaacgttgaactttgaccctgtggacatggaaagttccgccactgagcttatg
gatggtcgcagagggagcgttgtcacacctccaatcaggccccctcgcagatcacagaga
aaggccaaccaatcaacaacacccagggatgttgtgtag
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