Oncorhynchus nerka (sockeye salmon): 115144059
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Entry
115144059 CDS
T07952
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04622
RIG-I-like receptor signaling pathway
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115144059 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115144059 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
one04054
]
115144059 (ifih1)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115144059 (ifih1)
Pattern recognition receptors [BR:
one04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115144059 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115144059
NCBI-ProteinID:
XP_029540612
EnsemblRapid:
ENSONEG00000029970
LinkDB
All DBs
Position
LG1:complement(12713887..12731007)
Genome browser
AA seq
1002 aa
AA seq
DB search
MAADKDNTANISLIENFRPRLRKLIEIEFVLDHLNFLDNDNKDLIRTKARKESNLKAVDL
LIDTIIRIRPLPKGWFREFVDALSAGGCKHAATYVEDSPPCPALEAENDNCVRLIELLLP
SLLGMKTTDVCWDCFSKGILTTEDREIILAECQNRGNMGGARELLRRIVRFPPGWFSTFL
KALQVTEHKDLCKELTGESPGDNLIDEPGVLMAVNEAPGNVDPMVEEGPVEAVGKSFLPE
QETLDSSVTSMNLDEPSEADSEIADLYSGTEEPMENGKPENSLDLSMSGCIAPAAESPPK
AVIVLRDYQMDVARPALEGKNIIICLPTGSGKTRVAVYITKEHLDSRRKEGRPGKVVVLV
NKVPLVEQHYSTEFWKFLKNKYKVERVSGDSQLKISFTDIVQKNDIVICTAQLLENYLER
AHSGDDDGIKLSDLSLIVIDECHHTQKGGVYNHIMIRYLKQKHKNAKLKKEQKDTVAIPQ
ILGLTASPGVGGAKKIDKAEEHILRICANLDAYKIMTGNLGENKKEPHKKIATAEERKED
PFGDVLKGVMNAIHIHAELNPTCDLGTQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYN
EALYLGKTIRMWDAFSFLDKYFDEELKKKVAPEDEEAIIKTDTERFLFTLFKDSKVKLQE
LAKLPQYENNSLAKLRTKILHEFTSREKARGIIFTKTRRSAIALAQWVQENSKFEEVGVK
ACHVIGGGGQSVVKPMTAAEQRDVLNKFQNAEINLLIATTVAEEGLDIAACNFVIRYELV
TNEIAMIQARGRGRAEDSSYTLVAGEGSGVAERESVNEYREKMMSKAIDKVKKLDQEEYE
KRIKEFQIQAIMEERVRTTKKKQKGMKKESPSKVKFSCRSCNKPVCSGEDVEIIENMHRV
NVTPQFKELFIQRENTSLVKRLLDYETNGFIACKDCGQRWGSMMLYRGIECPCLHVKNFL
VTYDEKRKNVNKWSELGIQLPAFDYAEHARSVAESSEDEESM
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgacaaagataacaccgccaacatcagtctgattgagaacttcaggcctagg
ctgcggaaactcattgaaatcgagtttgtactggatcacctgaacttcttagacaatgac
aacaaggacttgatccgaactaaggcgagaaaagagagcaatctaaaggcagtggatcta
cttattgatacaatcatcaggatccggccacttccgaaaggttggttcagggagtttgtg
gatgcactgtcagctgggggttgtaaacatgctgccacctacgtggaggatagccctcca
tgtcctgctctggaggcagagaatgacaactgcgtcagactaattgaacttctgttgcca
agtcttttggggatgaagactactgatgtttgctgggactgtttttcgaaaggtattctc
accacagaggaccgtgaaattattttagctgaatgtcaaaaccgaggaaatatgggtggt
gctcgtgaactgctcaggagaatcgtgagattcccgcccggatggttctccaccttcttg
aaggccttacaggtcactgaacacaaggacctgtgtaaagaattgacaggggagtcacct
ggtgataacttgatagatgagccaggtgtcctgatggctgtgaatgaagctccagggaat
gtggatcccatggtggaggagggtcctgtagaagcagtggggaaatcttttctcccagag
caggagacattggatagcagtgtgaccagcatgaatctggatgaaccttcagaggctgac
tcagaaattgcagacctatatagtggcacagaagaaccaatggaaaatgggaaaccggaa
aatagcttggatctctcaatgtcaggctgcattgcccctgctgctgaaagccccccaaaa
gctgtcattgttcttcgagattatcagatggacgtggccaggcccgccttggagggaaaa
aacatcatcatatgcctcccgacaggaagtggtaaaaccagagttgctgtctatattacc
aaagaacatctggacagcaggaggaaagagggccgaccagggaaagtggtcgtcttggtg
aacaaggtgcccctggtcgagcagcattactccacagagttctggaagttccttaaaaac
aaatacaaagttgagagggtcagtggggactcccagctcaaaatctccttcacagacatt
gtccagaaaaacgatattgtcatctgtacagcccagcttctggagaactacttggaaagg
gctcacagtggagatgacgatgggattaaactttcagatttgtcactgattgtgatcgat
gagtgccaccacacacagaagggaggagtctataaccacatcatgatccgctacctcaag
cagaagcacaagaacgccaagttaaagaaagagcagaaggatacagtggccatcccacaa
atcctaggcttgaccgcctcacctggcgtcgggggagccaagaaaattgataaagcagaa
gagcacattctacgaatctgcgcaaatttggacgcatacaaaataatgacggggaacctt
ggggaaaacaaaaaagaaccacacaaaaaaattgccactgccgaagagagaaaagaggat
ccctttggcgatgttctcaaaggagtcatgaatgccattcacatccatgctgaactgaac
cctacctgtgacctaggcacccagaactatgagcagtgggtggtccagaaagaacaaaat
gctgcaaaagaggagaatcaaaaagtgcgagtttgtgctgagcatctacggcagtacaac
gaggccctgtacctaggcaaaaccatccgcatgtgggatgccttcagcttcctggacaaa
tactttgacgaggagctgaagaagaaagtggccccagaggacgaggaggccatcattaaa
actgatacagagcgattccttttcacactctttaaagatagcaaagtgaaactgcaggag
ttggctaagcttccccagtatgaaaataatagcctagctaagctgaggaccaaaatcctg
catgagtttacatctagagaaaaggctagagggatcattttcacgaaaacccgtcgcagt
gccatcgcattagctcaatgggttcaggagaactccaagttcgaggaggtcggagtaaaa
gcttgccatgtgattggaggaggaggccagagtgtcgtgaaaccaatgaccgctgcagaa
caaagggatgttttgaacaagtttcagaatgcggagatcaacttgctgattgcaacaaca
gtggctgaagagggtctggacatagcagcatgtaactttgtgatacgatatgagcttgtg
accaatgagatcgctatgattcaggcccgaggcagaggcagagctgaggacagtagttat
accttagtggcaggggagggttctggggtcgccgaacgagagagtgtcaacgagtaccgt
gagaagatgatgagcaaagctatcgataaagtcaagaaattagatcaagaggaatatgaa
aagaggattaaagaattccagattcaggcgatcatggaggagagagtgcgaacaaccaag
aagaagcagaaaggaatgaaaaaggagagcccgtccaaagtgaagttcagttgtagaagc
tgcaacaaaccagtctgctctggggaagatgttgaaatcattgaaaatatgcacagagtc
aacgtaacaccccaatttaaggaacttttcattcaaagagaaaacacctcacttgttaag
aggctactggactacgagaccaatggtttcatagcatgcaaagactgtggacagaggtgg
ggttcaatgatgctctaccgtggaatcgagtgtccctgtcttcatgtcaagaacttcctg
gtgacgtatgatgaaaagaggaagaacgtcaacaagtggagcgagctgggtatccagtta
cctgcctttgactatgctgaacacgctcgatctgtggccgaaagctcagaggatgaagaa
tcaatgtaa
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