Oncorhynchus nerka (sockeye salmon): 115144695
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Entry
115144695 CDS
T07952
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115144695
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
115144695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
Na_trans_cytopl
IQ
GPHH
PFF1_TM
FraC
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
115144695
NCBI-ProteinID:
XP_029541615
LinkDB
All DBs
Position
LG1:13156075..13207397
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AA seq
1747 aa
AA seq
DB search
MVIMFTILTNCAFMTLSQPPDWAKNIEYTFTGIYTFESLIKILARGFCVGKFTFLRDPWN
WLDFCVIVMAYVTSFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALVGLQLFMGNLRNKCLRIRPNSTNLLNDTLDFNGKEYNEGDFNETVPFN
WTNYTNNPDNYYYLPGKRDALLCGNGSGAGLCPEGFWCVKAGRNPDFGYTSFDTFSWAFL
SLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYDEQNQAT
MEEAQKKEEEFQAMLEQLRRQQEDAQAAATVMAAESGEFSERGDLTESSSEASKLSSKSA
KERRNRRKKRKQREEEEREDNDKCHRSESESSMKKSHFRFSMDASNLHNYDMSCSTPYQE
NSTETEYRKARYGSYQASMDFLEDPVARQRALSVASVITNTMEELEESRQKCPPCWYKFA
NTFLIWDCCPKWLRIKKIVKMIVMDPFVDLAITICIVMNTVFMAMEHYQMSGEFNTMLYV
GNLVFTGIFTAEMCFKIIALDPYIYFQEGWNIFDGIIVSLSLMELGLANVSGMSVLRSFR
LLRVFKLAKSWPTLNKLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYRDCVCK
ISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFLMVMVIGNLV
VLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIDRIHQGVAFVKALVRRSFQSICLRKK
KRSLNEDTTLDDLHKTMGTNWNSNHTTVEIMKDPDYIKDGNGATSGLGVGVCSNAAGKYI
MNDNTDYMPFIHNASLTVTVPIAVGESDLNTEDFSSDSSDIEESKEQLSEDHPLSSSEGS
TVDIRPPGEGEGSVGMEPEESMEPEGCFTDGCVRRFQCCQVNVDEAKWKMWWTLRKTCFR
IVEHNWFESFIIFMILLSSGALAFEDIYIEKRKNIKTVLEFADKVFTHIFILEMLLKWVA
YGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYAELSAIKSLRTLRALRPLRALSRFEGM
RVVVNALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNITTQERFKVRDVANK
TECLALEGAYWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEDQPDYEVNL
YMYMYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSK
KPQKPIPRPANKFQGYVFDFITKQAFDIVIMILICLNMVTMMVETDDQTDDMDGILYKIN
LVFIVMFTGECILKMFSLRQYYFTIGWNVFDFIVVILSIIGMFLSELIEKYFVSPTLFRV
IRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVRK
ESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNKREPDCDSRKEHPGSKYKGGDC
GNPPVAIIFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFD
ARATQFMEYEKLSDFADALDPPLRISKPNKIQLIYMDLPMVSGERIHCLDILFAFTKRVL
GEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKQEDMSALIIQRAFRRYLLRRIVK
RASAMYKEKMLLDKEVLVIDKFNELSTSDRTDMTYSTGSPPSYDSVTKPEKNKYEKVKRE
KVKKKKK
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggtaatcatgttcaccatccttaccaactgtgcgtttatgaccctgagtcagcccccg
gactgggcaaaaaatatagagtacacattcactggaatttatacatttgagtctcttata
aaaatattggcaaggggcttctgtgtcgggaagttcacctttctacgagatccatggaac
tggttggatttctgtgtcattgtcatggcatatgtcacatcgtttgtggacctgggcaac
gtgtcagcactgagaacgttcagggttctccgagcactgaaaacgatatcggtcatccca
ggcctcaagaccattgtgggagcgctgatccagtcagtgaagaaactgtcagacgtgatg
atcctcactgtattctgcctaagtgtctttgccctagtagggctgcagctgtttatgggc
aatttaagaaacaaatgtttaaggatccgtcctaactcaaccaacctcttgaatgataca
ttggactttaatgggaaggagtataatgaaggggactttaacgagaccgtcccgttcaac
tggaccaattacactaataatcctgataattattactacctcccaggtaaaagggatgct
ttgctttgtggaaatggcagtggtgctgggctgtgtccagagggattctggtgcgtcaaa
gcaggccggaacccagacttcggctacaccagctttgacacgttcagctgggccttcctg
tctctgttcagactgatgactcaggactactgggagaacctctaccagcagaccctgcgg
gctgctgggaagccgtatatgatcttctttgtgctggtcatcttcctggggtccttctac
ctgatcaacctgatcctggctgtggttgccatggcgtacgacgagcagaaccaggccacc
atggaggaggctcagaagaaggaggaggagttccaggccatgctggagcagctgagaaga
cagcaggaggatgcacaggcggcggcaacggtgatggcggctgagagtggggagttcagt
gagagaggcgacctcactgagtcctcctcagaggcctccaaactcagctccaagagcgcc
aaagagaggcgcaacaggcgcaagaagaggaagcagagggaggaggaggagagagaggac
aatgacaagtgtcacaggtctgagtccgaaagcagtatgaaaaagagtcacttccgcttc
tccatggatgcctctaacctgcacaactatgacatgagctgttcaacaccataccaggaa
aactctacggagacagagtatagaaaggcccgatatggatcgtaccaggcctctatggac
ttcctggaagacccagttgccaggcagagggcgctcagtgtagctagtgttataaccaac
actatggaagaacttgaagaatcgagacagaagtgccctccttgctggtacaagtttgcc
aacaccttcctcatctgggactgttgtccgaagtggctgaggatcaagaaaatagtcaag
atgatcgtgatggacccgtttgtagacctagctatcaccatatgtattgttatgaacaca
gtgttcatggctatggagcattaccaaatgtctggggagttcaacaccatgctttatgtg
ggaaacctggtgttcacgggtatcttcacagctgagatgtgtttcaagattattgctttg
gatccatacatttattttcaggaaggctggaatatatttgatggtatcattgtcagtttg
agcttgatggagcttggcttggccaacgtgtctggaatgtctgtcctcagatcattccga
ttgctgagagtattcaaactggccaagtcttggcccacactgaacaagctgatcaagatc
attggtaactcagtgggggccttaggtaatctcaccctcgtactggccatcattgtcttc
atcttcgccgtggtgggcatgcagctttttgggaagagctacagagactgtgtgtgtaag
atctctacagactgcacactgccccgctggcacatgcatgacttcttccactccttcctg
attgtgttccgggtgctgtgtggggagtggatcgagaccatgtgggactgtatggaggtg
gctggtcagagcatgtgtctcatcgtcttcctgatggtcatggtcatcgggaacctagtg
gtcctgaatctgttcctggccttgctgctgagctcgttcagtgctgataacctggcggcc
acggatgatgacagcgagatgaacaatctgacggtggccatagaccgcatccaccagggc
gtcgccttcgtcaaggccttggtgcgccgctctttccaaagcatctgtctgaggaagaag
aagaggagcctgaacgaggacacgaccctggatgacctccacaaaaccatggggaccaac
tggaactccaaccacaccactgtggagatcatgaaagaccccgattacataaaggatggc
aatggcgccaccagtggtttgggagtgggggtgtgcagcaatgcagcagggaagtacata
atgaatgacaacactgactatatgccgttcatccacaacgccagcctgaccgtcacagtg
cccatcgctgtgggagagtcggacctcaacactgaggacttcagcagcgattcctcagac
atagaggaaagcaaagagcagctatctgaagaccatccactgagctcctcagagggcagt
acagtggacattaggcccccaggagagggagagggctcggtgggcatggagcctgaggag
tccatggaacctgaaggctgcttcactgatggatgtgtccgcagattccaatgctgccaa
gtgaacgttgatgaggccaagtggaagatgtggtggacgttgagaaaaacttgtttcagg
atagtggagcacaactggtttgagagctttatcatcttcatgatcctgctcagcagtgga
gcgctggcatttgaggacatctacatcgagaagaggaagaacattaagacggtgttggag
tttgcagacaaagtcttcacccacatcttcatcctggagatgttgctgaagtgggtggcc
tatggattcgccaaatacttcaccaacgcttggtgctggctggacttcctcattgtcgac
gtgtctcttgtcagccttgtggccaacgccctgggctacgctgagctgagtgccatcaag
tccctgaggactctacgagcactgaggcccctgagagcgctgtcccgcttcgagggcatg
agggtggtggtcaacgctctgcttggagccatcccctccatcttcaatgtgctgctggtc
tgcctcatcttctggctcatcttcagcatcatgggcgttaacctgtttgcagggaaatac
taccattgtgtcaacatcaccacacaggagcgcttcaaagttagagacgtagctaacaag
acagaatgtttggctttggaaggtgcctactggaagaatgtcaagatcaactttgataac
gtgggagcgggctatctggcactgttacaagtggctacattcaaaggctggatggacatc
atgtatgcagctgtggactctcgcaatttggaagatcaacccgactatgaagttaatctg
tacatgtatatgtactttgtggtattcatcatatttggatccttctttacactcaacctc
ttcattggtgtcattatagacaacttcaatcagcaaaagaaaaagtttggaggtcaagac
atcttcatgacagaggaacagaagaaatactacaatgctatgaagaagcttggctcaaag
aaaccccaaaagcctatcccaaggccagcgaacaagtttcaaggatatgtctttgatttc
attacaaagcaagccttcgacattgtcatcatgattctcatatgccttaatatggtcacc
atgatggtggagacggacgaccagacggacgacatggatggaattctctataagatcaac
ctggtgtttattgtcatgtttaccggagagtgtattctgaagatgttctcactccgccaa
tactacttcaccattgggtggaatgtatttgactttattgttgttatcctgtcgataatt
ggtatgtttctgtctgaactgatagagaagtactttgtttcaccaaccttattccgagtc
attcgactggcccggattggtcgcatccttcgcctcatcaagagtgccaagggaatccgt
acactcttgtttgctttgatgatgtcacttcctgccttgttcaatattggtctcctgctc
ttcttagtgatgtttatctatgccatctttggaatgtcgaactttgcatacgtcaggaag
gagtctgggattgatgacatgttcaactttgagacatttggcaacagcatgatttgcctg
ttccagatcaccacgtcagctggctgggatggcctgctggcacccatcctaaacaagaga
gagccagactgtgacagtcgaaaagagcacccaggcagcaagtacaaggggggagactgt
gggaatccccctgtagccattatcttctttgtgagctacatcataatctgtttcctcatt
gtggtcaacatgtacattgctgtcatcctggagaacttcagtgtggccactgaggagagc
gctgagcccctgagcgaggatgactttgagatgttctacgaggtctgggagaagtttgat
gcacgggccacccagttcatggagtatgagaagctgtctgacttcgctgatgccttggac
cccccgctacgcatttctaagcccaacaagatccagttgatctacatggatttgcccatg
gtgagtggggagcgcatccactgcctggacatcctgtttgccttcaccaagcgcgtcctg
ggtgagggcgaaggcttggacatcctccgtggtcaaatggaggagcgctttatggcctcc
aacccctccaaggtctcctacgaacccattaccaccacgctacgccgtaaacaagaagac
atgtctgccctgataattcagagagctttcagacgatatctgctcagacgtattgttaaa
cgggcctctgccatgtacaaagagaagatgctccttgataaagaggttctcgtcatagac
aaatttaacgagctctctacctcagacagaactgacatgacatactccacaggctctccc
ccatcatatgacagtgtcacaaaaccagagaaaaacaaatatgaaaaagtcaagagagag
aaggtgaagaagaaaaagaagtga
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