Oreochromis niloticus (Nile tilapia): 100695255
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Entry
100695255 CDS
T06104
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100695255 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100695255 (cnot1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100695255 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100695255 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
100695255
NCBI-ProteinID:
XP_025765098
Ensembl:
ENSONIG00000007358
LinkDB
All DBs
Position
LG7:64086602..64110639
Genome browser
AA seq
2374 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTRMESSLAEFIQEVGYGFCASLDECRNIIVQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQSHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQIVVFGILRGLGIESFPVDLIYRPWKHAEGQLSFIQHSLMNPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQITTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSTLDAISPVQMDPLSGIGGL
NLGPTATSHNPSISFPTPVNTPFNNPQSPAKAFPPLPNPNPSTPFGSISGLPSQLPGALG
TGIGPGLGMPAGSTDPFGPRKMSTPGLNPPTFQQSKMKASDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALVQAQAQSQQP
AGLKAPQPGQPSTLVTTTTTTTTASKTSTIARPTPSNFKKDVPPSINTTNIDTLLVATDQ
TERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPN
FHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITL
AKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSMVFRPQNPWTMAIMN
VLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKNLEEQLSAPKKEAK
PPEEMLPVSTAAPPSTPAATTTTCATTGPPXPQFSYHDINVYALAGLAPHININVNIPLL
QAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDSEESRMRVAAHH
MMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRDMMEEAAARIAQDNCELA
CCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGG
VDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCIADLEQH
LHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADADLLL
RYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQY
DLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHSRANA
PEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNL
YHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPA
ASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQ
TEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELI
SHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVL
LHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAP
RILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYV
GTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTH
YFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDF
VHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaaaccaaactttatctctactctgtgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatctgctcacttattcactcaactgagcaaagttcttaag
ctcagcaaagtccaagaggttatatttggccttgctctgctcaactccagcaacacagac
cttcgtggctttgctgctcagttcatcaagcagaaacttccagacctcctgcggtcatac
gttgacgcagatcttggaggaaaccaagaaggtggcttccaagacattgccatagaggtg
ctgcacctactgctctcccatctactgtttggacagaagggagccagtggggtagggcaa
gagcagattgacgccttcctaaaaacactttgccgagatttcccccaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
cctgactcgggggagttagctaagaccaggatggagagttctcttgcagaattcattcaa
gaagttggctatggtttctgtgctagtctggacgagtgcagaaacataatcgtccaatat
ggggtgagagaggtgacagccagccaggtagccagagtcctgggcatgatggctcgtacc
cactctggtctaactgacggcatcccactacagtctatctccgctccaggaagcggtatc
tggagcgatgggaaagataagaacgatggttcgcagtcacatacgtggaacgttgaggta
ctcatcgacattgtcaaagaagtgaatcccaatctcaacttcaaagaggtgacatatgaa
ctggaccacccgggctttataatccgagatagcaaaggcctgcagatagtggtgtttggg
atcctgagagggctgggcattgaaagttttcctgtggatctcatctatcggccttggaaa
catgctgagggacagttgtcattcattcaacactccctgatgaacccggaagtgttttgc
tttgccgactacccttgtcacactgtggccattgacatcctcaaggccccaccagaggat
gacaatagagagattgccacatggaaaagtctggatctggtggagagtctgcttcgactg
tctgaggtgggccagtatgagcaggtgaagcagctgttcagcttcccgatcaaacactgc
ccagatatgttggtgctggcattactgcagattaccacctcgtggcacacactgcgccac
gagctcatctccaccctgatgcccatctttttgggaaatcaccccaactctgccattatc
ctgcactacgcctggcatggacagggacagtctccttccatacgtcagctaattatgcat
tcgatggctgaatggtacatgagaggggagcagtatgaccaagcaaagttatctcgcatc
ctggatgtggcccaagacttaaagtctctatcaatgctgctgaatggtactccgtttgcc
tttgttattgatctcgctgcacttgcctcgcgtcgtgaatacctcaaacttgataaatgg
cttactgacaaaattagagagcacggggaacctttcatccaagcttgtgtgacgttcttg
aagaggcgctgtccatccattatggggggtttggctcctgacaaggaccagcccaaaagt
gcccagttacctccagagactttagccaccatgctagcctgcttgcagtcatgtgctggc
agtgtatcccaggagttgtcggagactatcctgacgatggtggctaattgcagcaatgta
atgaataaagcccgacagccaccaccaggtgtaatgccaaagggacgtgccccgagcacc
agcaccctagatgccatctcacctgtacagatggaccctctgagtggcattggcggtttg
aatttggggcccacagctacttcccacaatccaagcataagtttcccaaccccagtgaat
acacctttcaataatccccagtctccagcaaaagcctttccaccacttcccaatcctaat
cccagcacaccttttgggagcatttccggcctcccttcacagctccctggtgcacttggc
acgggcatcggtcctggtctagggatgccagcaggaagcactgatccttttggtcccagg
aagatgagcacaccgggcctgaacccaccaacctttcagcagagtaagatgaaggcctcc
gacctttctcaggtgtggcccgaagcaaaccagcactttagtaaggaaatagatgacgaa
gcaaacagttacttccagcgcatttacaaccatccacctcacccaaccatgtctgtggat
gaagtcttggaaatgctgcagaggtttaaggattcaaccatcaagcgggagcgagaggtg
ttcaactgcatgcttcgaaacctgtttgaggaatacagattcttcccccagtacccggac
aaggagctgcatatcactgcctgtctttttggtggaataatcgagaagggtcttgtcacg
tacatggcccttggtttggccctccgatatgttcttgaagccttaagaaaaccgtacgga
tccaaaatgtattactttggaattgctgccctagatcggttcaaaaacagactaaaggac
taccctcagtactgtcagcacctggcttcaattggtcatttcttgcaattcccccaccat
ttacaagagtatattgagtatggacaacagtcacgggaccctccagtgaagatgcagggg
tccatcaccacacctgggagcctggctctggtgcaagcccaggcacagtcacagcaacct
gccggccttaaagccccacagccaggccagcccagcaccctcgtcacaaccaccaccacg
acaaccacggcctccaagacgtccacgatcgcaagaccgacacccagcaacttcaagaag
gatgtgcctccctccataaacactaccaacattgacaccctgctggtggctactgaccaa
acggaaaggattgtagaacctccggagaatgtccaggagaagattgcttttattttcaac
aacctttctcagtccaacatgactcagaaggtcgaggagttgaaagagacggtgaaagag
gagtttatgccctgggtgtctcagtacctggtgatgaagcgagtcagcatcgagcccaac
tttcacagcctctactcaaactttttggacacactcaaaaaccctgagtttgtgaagatg
gttcttaatgaaacctacaggaacatcaaggtgcttctgacctcagacaaggcagctgcc
aacttctctgatcgctccctgctgaagaaccttggccactggttaggcatgattacactg
gccaaaaacaagcctatcctttacacagatctagaagtaaagtctttgctactggaagct
tatgtgaaaggccagcaggagctgctctatgtggttccctttgtggccaaagttttggaa
tccagcgtgcgaagcatggttttcagaccccagaatccttggacaatggccatcatgaat
gttctcgctgagctgcatcaggaacatgacctcaagttgaatttgaagtttgagattgaa
gttctgtgtaagaacttatctttggacatcaacgagctgaagccaggaaacctgctgaag
gacaaggagaagctaaagaacctcgaggagcagctatcggcaccaaagaaggaggcaaaa
cctccagaggagatgctgccagtctctactgcagctcctccctccaccccagctgcaacc
accaccacttgtgcaacgaccgggccccccnacccgcagtttagttaccatgacatcaat
gtgtatgcactggcaggcctggctccccacatcaatataaatgtcaacatccctctgctg
caggctcatcctcagctaaagcaatgtgtgcgtcaatcagtggagcgtgccgtccaggag
ctggtgcaccctgtggtcgatcgctctatcaaaatcgcaatgacaacctgtgagcagatc
atcaggaaggactttgctctggattctgaagagtcccgcatgcgtgtggctgcgcaccat
atgatgagaaacctgactgctggcatggccatgatcacctgccgtgagcctctgctcatg
agcattgccaccaacctaaagaatagctttgctgcagctctgagggcaccaacaccccaa
cagagggacatgatggaagaggctgcagccagaattgctcaagacaactgtgaactggct
tgctgtttcattcagaaaacagcagtggagaaggctggccctgaaatggacaagagacta
gccacggagtttgagctgaggaagcatgcacgccaggagggacgtcgctattgtgatccc
gttgttctgacttaccaggctgaacgtatgccagagcagatcaggctaaaggtgggagga
gtggaccctaagcagctggctgtgtatgaggagtttgctagaaatgttccaggtttctta
ccaagtaatgacctttcccaaccgactggcttcttggctcagcccatgaagcaacaggca
tgggcgacggatgatgttgctcagatctatgataagtgcatagcagacctggagcagcat
cttcatgccatccctccagcgcttgccatgaaccctcttacccaggccctgcggagcttg
ctggaagctgtggctctggctagaaactccagggatggcattgcagcgcttggcttgctg
cagaaggctgttgaaggtcttctggatgctacgagcggcgccgatgccgacttgctgctt
cgctatagggagtgccacctgttggtgcttaaagccctccaggatggacgtgcctatggc
ccacagtggtgcaataagcagatcaccaggtgtctgattgaatgccgtgacgaatacaag
tacaacgtcgaggcggtggagcttttgatcaggaaccatcttgtaaatatgcagcagtat
gacctgcacctagcacagtcaatggaaaatggactgcactacatggcggttgcatttgcc
atgcagttggtgaagctgctgctggtggatgaacgcagtgtgagccacgtcacagaagct
gacctcttccacacaattgagactttaatgaggacctgtgcacactccagagctaatgca
cctgaggggcttccccagctgatggatgtggttcgctccaactatgaagccatgattgac
cgggcccacggtggacccaacttcatgatgcactctgggatttcacaggcgtcagaatat
gatgatcctccaggcttgagggagaaggcagagtacctcctgagggaatgggtcaacctg
tatcactcagctgctgctggcagggatagcaccaaagctttctctgcctttgttggccag
atgcaccagcagggaattctgaagacggatgacctgatcactcgcttcttccggctgtgc
acagaaatgtgtgtggagattagctatcgggcacaagctgaacagcagcacaacccagca
gccagtgcagccatcatcagagctaaatgttaccacaacctggatgcctttgtgaggctc
atagccctgctggtgaaacactctggagaggccaccaacacagtgacaaaaatcaacctc
ctcaacaaggtgctcggcattgtagttggcgtgttgatccaggaccacgatgttcgtcag
actgaattccagcagctgccgtatcaccgcattttcatcatgctgctgttggagctcaac
gcccctgaacatgtcctggaaaccatcaacttccagacactcactgccttctgcaatacc
ttccacatcctgagacccaccaaagcacctggttttgtgtacgcctggctggaactgatt
tctcatcgcatcttcattgccaggatgcttgcacacaccccacagcagaagggttggccc
atgtacgcacaactgttgattgatcttttcaagtacctggcccctttcctgaggaacgta
gagctcaacaaacctatgcaaatcctctacaagggcacgctgcgagtgctcctggttctg
cttcacgacttcccagagtttctgtgcgattaccattatggcttctgtgacgtcatccca
cccaactgcatccagctccgcaacctcatcctcagtgcctttccacgcaatatgaggctt
cctgaccctttcacacccaatctgaaggtggacatgctgagcgagatcaacatcgctcca
cggatcctcacaaacttcacaggcgtgatgccttcacagttcaaaaaggatctggactca
tatctgaagacgcgctcacccgtgacgttcctgtctgagctccgtagtaacctgcaggtg
tctaatgaaccaggaaaccgctacaacatccagctgatcaatgctctagtgttgtatgtg
gggacacaggcaattgctcacattcacaataagggcagcaccccctccatgagcaccatc
acccactctgctcacatggacatcttccagaatctggctgtggacctggacactgagggg
cgttacctgttcttgaatgcgatcgccaatcagctgcgttaccccaacagtcacactcac
tacttcagctgcacgatgctctatctgtttgccgaggccaacactgaggccatccaggag
cagatcaccagggttctgttggagaggctgatagtgaacaggcctcacccgtggggtctc
ctcatcaccttcatcgagctgatcaagaatcctgcctttaagttctggagccacgacttt
gtgcactgtgcccctgagattgaaaagctgtttcagtctgtcgcccagtgctgcatggga
cagaagcaggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
