Oreochromis niloticus (Nile tilapia): 100701468
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Entry
100701468 CDS
T06104
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100701468 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100701468 (ndc1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100701468 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
UNC-79
Motif
Other DBs
NCBI-GeneID:
100701468
NCBI-ProteinID:
XP_005476678
Ensembl:
ENSONIG00000018548
UniProt:
I3KQF7
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All DBs
Position
LG18:23756654..23769465
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AA seq
666 aa
AA seq
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MFSAEQGCWFIRKVICWRAAASIAWAVLLLPPSTAIFVILSKFSVLHPIQTISECFSMLT
SATAIFSFILLCGVIIMVGFLNFEYYTVIPTIACSKIALFGQLLHPRQLVNSLVHCIMGM
IVAWCSAVTIGFRYETLGHPCAQTDGYHQMCLNEYHLILLLGGAFVGFSHSLLGVIHNMN
YVSFHTVQQYKYLRFKGCLPLVVKCSATQALYSVRNFIVVYYFLGYIPRTWICKTLNLHL
GSSAHPLDSIAGLLDLSLLYHLWISATFLLFTWYITLLLFRIFLTEGYSFPVQSSFTEDA
DHCLPKVLTEKQPMILKFLALQDLALLSQHSPLRRCEVFSLSQPGGHPHNWNAISKECLS
LLADLTQRLVAYHDTVATNGRAKSLSSGSERKTSSETSGTEDFMSPRPTALMKTPASVFT
RSIAGGQQSPLTAPFTPDLDSPFMSPALRRLAAPVEQGSPWYGTVQSPHIMRRVPKLWST
STDSQVNGSSPPSPASVPSDKQEPSKPSFLAQFLQNRREQVKNFLAKRVLIVYLFNKLPE
ASSQALFADSQAHIWALEGLSYLVQASFSEDQFGVVQTTLPSILSCMLVLQEAVDRHFKL
PHASSKPVRSTSSMGDSTYKTLRFALRATLKTAIYRITTTFGDHLNAVQLSAEHRKRLQQ
FLEYKE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgcagagcagggttgctggtttatccgcaaggtaatttgttggagagctgca
gccagtattgcttgggctgtactgttgttgccacccagcacagcgatttttgtgatcctc
agcaagttcagtgttctccaccccatccagaccatatcagaatgcttctccatgctaaca
agtgcaactgccatcttctctttcatcctgctgtgtggagtgatcatcatggttggtttc
ttgaactttgagtattacacagtcattccaactattgcatgctcgaaaatcgcactcttt
ggtcagcttctccaccctcgacagcttgtcaactccctggtccactgcatcatgggaatg
atcgtggcttggtgttctgccgttaccatcggttttagatacgaaactcttggccacccg
tgtgcacagaccgatggttatcatcagatgtgtctgaatgaatatcatctcatccttctg
ctgggtggagcttttgttggattctctcacagtctgctgggtgtgatccacaacatgaac
tatgtctccttccatactgttcagcaatacaaataccttcgcttcaagggatgtcttcct
ttggtggttaagtgcagtgccactcaggcactttactctgtcaggaacttcatcgttgtt
tattactttttggggtacattccaagaacatggatctgtaaaacactgaatcttcacttg
ggcagctctgcccaccctcttgacagcatagctggattgctggacctctccctcctctac
cacctctggatcagtgccacctttctcctcttcacttggtacatcacactgctgctcttt
aggatttttctcactgaggggtacagttttcctgtgcagtcatcttttactgaagatgca
gaccattgtcttcctaaagtactgactgaaaagcagccaatgatattaaagttcctagct
ttgcaggacttggctctgttgtctcaacattctccattacgacgctgtgaagtcttcagt
ctgagtcaaccaggtggacatcctcataactggaatgctatcagtaaagagtgcctctct
ctgctggctgatctgactcagagacttgtagcctatcatgacactgtagcaaccaatggc
agggccaaatcactgtcgagtggaagtgaaaggaagacctcttctgaaacatcaggtaca
gaagacttcatgagtccaaggcctaccgctctcatgaaaactccagcttcagtcttcact
cggtccattgctggaggccagcagagccctctaacagccccattcacccctgatctggac
agcccttttatgtctcctgcactgcggcgtcttgctgctcctgtggagcaaggctcacct
tggtacggcacagtgcagagcccccacatcatgaggcgagtgcccaaactctggtccaca
tccacagattcccaggttaatggcagttccccaccatcaccagcttcagttcccagtgac
aagcaggaaccctccaaaccaagttttctggctcagttcctccagaacagaagagaacag
gttaaaaatttcttggcaaagcgggtgctgatagtgtatttgtttaacaagctcccagaa
gcctcgagtcaggctctctttgctgacagtcaggcccacatctgggctttggaagggctg
tcttaccttgttcaagcctcattctctgaagatcagtttggggttgtgcagactacatta
cccagcattctcagctgcatgctggtcttacaagaggctgtcgatcgacacttcaagctg
cctcatgcctccagtaagcctgtcaggtcgaccagcagcatgggagactcgacatacaaa
acgctgcgctttgctctcagggccacactaaagactgccatctacaggataacaaccaca
tttggtgatcacttaaatgctgttcagctgtctgcagagcatcggaaaagattgcagcag
tttctggagtacaaggagtaa
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