Oreochromis niloticus (Nile tilapia): 100706711
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Entry
100706711 CDS
T06104
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100706711 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100706711 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100706711 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
100706711 (col9a3)
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Others
100706711 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100706711
NCBI-ProteinID:
XP_003438858
Ensembl:
ENSONIG00000017095
UniProt:
I3KKB3
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Position
LG20:complement(13060116..13075259)
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AA seq
678 aa
AA seq
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MAVLSALWVLLLSQLLISSSAQRPGPRGAPGLQGPPGPPGRDGTDGKPGPPGLPGKPGPK
GKAGKPGGPGQPGLPGLPGVDGLTGPDGPLGRDGPPGEPGEAGPPGPPGPPGRGRPGASG
LPGTNGLPGGPGPQGPVGPEGLPGLPGPPGPDGLPGLPGTLHDLNGELLCPAICPSGPPG
PPGMPGFKGHTGHKGDKGEPGKDGEKGDAGPPGPPGLPGTVGLQGPRGLRGLQGPMGPVG
DRGFPGFRGKPGIPGIIGKTGDVGEKGPQGFKGPKGEIGKIGPKGASGGLGPKGEPGIPG
RDGKDGTPGLDGEKGDPGRHGVVGEKGPNGLPGLPGKAGTKGSKGEAGDPGKPGEMGPSG
EPGIPGEIGIPGERGIAGPRGVAGGIGPVGNPGPRGVRGFQGVKGDLGDPGLPGPTGIRG
EFGDRGPVGASGPKGDMGVAGSDGLPGENGDPGPFGPVGQKGEAGKRGELGPKGVTGPQG
EVGGRGPPGKEGPMGFQGEQGVPGLPGKRGVPGKLASEQHIRELCGPMIDDQVAQLAANL
RRPLAPGMVGRPGPPGPPGKPGVAGSIGHPGARGPPGYRGLPGELGDPGPRGDVGEAGDK
GSIGKAIDGPPGDQGYQGLPGVPGIVKDGRDGSPGDPGEPGEPGRVGRTGHQGPPGICDT
SACQGTSPAGKSSNPKNN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgctctctgcgctttgggtgcttttattgtcccagctattgatatcatcctca
gcccagaggccaggccccagaggagctcctggcctgcaaggacccccagggccaccagga
agggatggcactgacggtaaaccaggacctcccggtctgccagggaaaccaggtcccaaa
gggaaagcgggaaaaccagggggaccaggacaaccaggactgccgggacttccaggtgta
gatggtttgacaggtcccgatggtcctcttggcagggatggacccccaggagaaccaggt
gaagcaggtcctcctgggccacctggacctcctggcagagggagaccaggagcttcagga
cttcccggcaccaacgggttgccaggcggacccggaccccagggcccagtgggtcctgag
ggtcttcccggactacccggacctcctggcccagatggactcccaggtcttcctggtaca
cttcatgatctcaacggagagcttctgtgtcctgcaatctgcccctctggcccgcctggt
cctccgggaatgccgggattcaagggtcacactgggcataaaggagacaagggagaacct
ggaaaagatggagagaaaggtgatgctggaccaccgggtccaccaggtcttcctggcact
gtgggtctccagggtccacgtggtctaagaggtttacaaggcccaatgggacctgtaggc
gacagaggcttccctggtttcagaggcaagcctggcatccctggcattattggaaagaca
ggtgatgtcggagaaaaaggaccacagggattcaaaggacccaaaggagaaataggtaaa
attggtcccaaaggagcttctggtggactagggcccaaaggagagcctggtattcctggc
agagatggcaaagacgggaccccagggttggatggtgagaagggcgatcctggacgccac
ggggtagttggagagaaaggaccaaatggccttcctggtctgccaggaaaggctggtaca
aagggatctaaaggagaagctggtgatccaggaaagcctggggagatgggaccctctgga
gagccaggtattcctggtgagattggcatcccaggagagagggggatagcaggtccaaga
ggagtggcgggaggtattggaccagtgggcaaccctgggcctcggggagtaagaggcttc
cagggagtcaaaggagacttgggagatccgggtcttccaggaccaacaggaattcgtgga
gaatttggtgacaggggcccagtcggggcttctggacctaaaggagacatgggtgttgca
ggaagtgatgggttaccaggagagaacggagatcctggtccctttgggccagttggacaa
aaaggggaggcggggaagcgaggtgaactggggcctaaaggcgtgacgggtccacaagga
gaggttgggggaagagggcctccaggaaaagaaggcccaatgggcttccaaggggagcag
ggtgtgcctggacttccaggaaagagaggtgtacctggtaaactggcaagtgagcaacac
atcagagagctatgtggcccaatgattgatgatcaggttgcacaactggctgccaacctg
cgaagacccctggcacctggaatggtgggccgccctggccctccagggccgccaggaaag
ccaggagttgcaggctctattgggcatccaggtgcccgaggtccaccagggtacagaggc
ctgccaggagaacttggagatccaggtcccagaggtgatgttggtgaggcaggtgataag
ggatccattggtaaagccattgatgggcctcccggagaccaaggataccaaggtcttcca
ggggtacctggaattgttaaagatgggcgcgatggctctccaggagatccaggtgagccc
ggagagccaggcagagtaggcaggactgggcaccaaggacctcctggaatctgtgacaca
tcagcttgtcagggaacatcacctgctgggaaatcctccaaccccaaaaacaattaa
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