Oreochromis niloticus (Nile tilapia): 100708902
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Entry
100708902 CDS
T06104
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100708902
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100708902
09142 Cell motility
04820 Cytoskeleton in muscle cells
100708902
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
100708902
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Others
100708902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100708902
NCBI-ProteinID:
XP_003448964
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Position
LG22:complement(26668499..26687107)
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AA seq
691 aa
AA seq
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MAALSALLKTWVILQTLCLALAQVNGPPGPPGPPGPPGPSGTPGSDGIDGEKGRPGSPGP
PGQKGEPGEPGPDGSPGENGIDGLIGAKGDRGPIGRPGPKGQPGPTGEPGPPGPGLPGLA
GIPGPIGLPGEIGPTGPKGILGPPGPPGLPGPPGKPGPPGKFIVGEEGSADFECPLNCPA
GPKGPQGLQGVKGHKGRAGTLGDPGSIGRPGPKGEVGISGEQGIPGPSGPMGLSGYPGMM
GPKGEPGPRGYKGIGGPVGPPGPPGEEGPRGPPGEPGDKGDKGSRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGGPGQAGMPGPPGPQGAAGLPGSPGAKGGPGAKGEPGPRGHV
GLPGPPGPLGEPGIPGEPGMQGIPGPKGDRGERGPVGPQGAAGKPGSKGERGPIGVPGAQ
GLSGTKGDKGFQGKVGSKGGIGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDTGHNGPT
GDPGKPGDQGPPGLPGPRGLNGERGVPGMPGIQGPSGRDASDQHIVEVVLKMMQERLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGAPGPQGPHGLPGARGIPGIIGAHGQIGNTGLKGKR
GPKGERGDPGRPHPGPPGAPGIQGPPGIDGVARDGRPGERGPQGTPGEAGRPGKSGPPGL
PGFCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctctgccttgctgaagacctgggttattctgcagaccttgtgcctggct
ttggctcaagtgaacggtccacctggacctccgggcccgccaggcccacccggcccctct
ggcactcctgggtcagatggcattgatggagagaaaggacgtcccggctcacctggccca
ccagggcaaaagggagagccaggagaaccaggtcctgacggatcaccgggggagaatggc
attgatggtttgattggagcgaagggtgaccgaggtcctatcgggagacctggaccaaag
ggtcaaccaggtccaactggtgagcccggacctcctggacctggccttccaggactggct
ggtattccagggccaattggtctccctggtgagatcggaccaactggaccaaagggtatc
cttggaccaccgggacctccaggacttcctggacctccgggcaagccgggtcctccaggc
aagtttattgttggagaagagggtagtgcagatttcgagtgtcctctcaactgcccagca
ggacctaaaggcccgcagggactgcagggagtcaagggacacaaaggacgtgccggtact
cttggagatcctggcagcattggaagaccgggccccaagggagaagttggtatctctggg
gagcagggcatcccaggaccttcgggtcccatgggtctgagtggttatccaggaatgatg
ggtcccaaaggagaaccaggccctcgtgggtacaagggcatcggcggaccagtaggacct
cctgggccacctggtgaggaaggacctcgtggaccacctggagagccaggcgataaagga
gacaaaggcagccgaggtatccagggcccacagggtgcagttggcaaaaagggagagaat
ggtctgccgggtattgatggaaaagatggcacacctggcattcctggaatcaagggtggc
cccggtcaggccgggatgcccggtcctcctggtcctcagggagcagcgggattacctggc
agcccaggagcaaaaggtggacctggagcaaagggggaacctggacctagaggtcatgtc
ggcttgcctgggccccctggacctttgggtgagcctggtattcctggtgagcctggtatg
caaggaatccctggacctaagggcgacagaggggagcgaggaccagttgggccacaggga
gcagccggcaagcctggaagcaaaggagagagagggcccatcggtgtgcctggtgcccag
ggtctcagtggaacaaagggagacaagggcttccaaggaaaagtcgggtcaaaggggggc
attggtgaccccggagtcgagggattggccggcgaaaaaggcgaaaagggtttgtctggc
gaacctgggcccaaaggacagcaaggaatcaggggtgacactggacacaatggacccact
ggagatcctggcaaaccaggagaccagggaccaccggggctgcccggtcctagggggctt
aatggagaacgaggagtacccggtatgccgggcattcagggaccatcaggacgtgatgca
tctgaccaacatattgttgaggttgtgctgaagatgatgcaggagaggctagcggccgtg
gcagtaagcgccaagagagctgtgcttggtggtgcaggtgtaatggggcctcccggaccc
cctggacctccaggggcacctgggcctcagggaccacatggcttacctggtgcccgcggc
atccccggcattattggagcacatgggcaaattggaaacacagggcttaagggaaaaaga
ggtccaaagggagagagaggagatccaggtagacctcacccaggtccaccaggagctcca
ggaatacaaggcccccccggtatcgatggagtggctcgggacggtaggcccggagagaga
ggacctcagggaacacctggagaggccggtcgccccggtaagtcgggtccgccgggtctc
ccgggattctgcgaggcagcgatgtgcctggccgcgtctgcttacacctcaccgagacta
caggaggcgggaacgatcaaaggacccaatgtttag
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