Oreochromis niloticus (Nile tilapia): 100710501
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Entry
100710501 CDS
T06104
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04518
Integrin signaling
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100710501
04518 Integrin signaling
100710501
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100710501
09142 Cell motility
04820 Cytoskeleton in muscle cells
100710501
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
onl04147
]
100710501
00536 Glycosaminoglycan binding proteins [BR:
onl00536
]
100710501
Exosome [BR:
onl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100710501
Glycosaminoglycan binding proteins [BR:
onl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100710501
Hyaluronan
Extracellular matrix or blood plasma proteins
100710501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
100710501
NCBI-ProteinID:
XP_025759891
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All DBs
Position
LG16:complement(14148005..14166314)
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AA seq
1041 aa
AA seq
DB search
MAMLSGFVFILLVQTVNLQLTPRGPRPIPGRGDSPEPTIPPLLPEPTPRPEGCEAGIIDC
PIRVYFTIDTSETVALQEPPPGSLVESIREFTKIFAERLADEEYRGHIQITWSIGGLHFS
QTQVVFSQLTTRANFIRNLASIRYLGKGTYIDCALKNMTHHMTQHYTETKAVLFAVVITD
GYVTGNPCSGIKVMAEKARDQGIQIFSVAASKEIDEFGMREIANSPYELFRDDYIAVEIV
DGKPRLSTKTIDRIVKAMKYQAYLQCYKPRCFESPGRPGLRGPSGPKGTKGDTGPPGPKG
ERGRQGDPGIEGPIGRPGPKGEPGLRGDKGEIGLTGAKGVAGSTGKNGTDGQKGKIGRIG
TPGCKGDPGDKGPDGYPGDVGETGPLVTKEKRVTWAFLESQAPPGPKGNPGPKGERGSQG
NPGQPGQRGSPGRKGSPGAKGEQGRRGNPGVKGAQGNTGPKGTKGERGPEGSRGRPGENG
LKGAKGELGLPGPRGQPGEPGTSGRNGTMGDPGDSGPRGDTGPLGPKGDRGRQGFSYPGS
RGPPGDRGAPGRRGPTGSRGDCGAKGESGNKGPSGAPGEPGQSGPPGERGPRGERGPDGD
SGPAGDSGLTECDVMNYIRETCGCCDCEKHCGAMDIVFVIDSSESVGLTNFTLEKNFVIN
TINRLGSMAPEPTSTTGTRVGVVQYSHNGTFESIRLDDPNINSMTAFKTAVKNLRWIAGG
TFTPSALKYAYDNLIRDSKRARSKVSVVVVTDGRFDPRDDDNQLTYLCNDPAVVVNAIGI
GDMFDTRHDSETLVSIACNKKDRATEMRRYSDLVADEFLEKMETVLCPDPVIKCPDLPCT
SELDLAPCVERPVDLVFLLDGSERLGERNFLLVREFVQKVADRLGLARTRTDRKRARLAL
MEFGKESDNRVAFPLTHDLAQIVNSLTALQYLDSSSSVAPGIIHAINNILVRGGARQTRP
NAEISFVFITDGVTNSDNLDEAISAMRRHEVVSTVIATGSDVDQEVLTKLAMGDQHAIFK
AEKFSDFLRSSMFDRFIRWVC
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgctttcagggtttgtctttatattgctggtccaaactgtaaaccttcaactt
acacctcgaggacccaggccaataccggggcgaggtgacagtccagagccaacaatacct
ccactcttacctgagcccacgccaagacctgaaggctgtgaagcaggtataatcgactgt
cccatcagggtgtacttcactattgacacctcagaaaccgttgcattgcaggagccccca
cctggcagcctggtggagagtatcagagaattcacaaagatctttgccgagaggctggct
gatgaggagtacaggggccatatccagatcacttggtccataggtgggctgcacttctcc
cagacacaggtggtcttcagccagctcacaaccagagcgaacttcatcaggaatctcgct
tcgatccgatacctgggcaaaggcacctacatcgactgtgccctcaaaaacatgactcac
cacatgacccaacattacacagagacgaaggcggttctcttcgctgtggtcatcactgat
ggctacgtgacaggaaatccatgttcagggatcaaggtgatggcagaaaaggcccgggat
caagggatccagattttctcagtagcagcgtccaaggagatcgacgaatttggaatgagg
gagatagcgaactctccgtacgagctgttccgtgacgactacatagcggtggaaatcgtt
gatgggaaaccaagactgagcactaaaaccattgatcgtatcgtaaaagcaatgaaatac
caagcatatttacagtgttacaaaccaagatgttttgagagtcctgggcgccctggacta
agaggtccctcaggtccaaaaggcacaaaaggagacacaggccctccagggccaaagggt
gaaagaggaagacagggtgatcctggcattgaaggtccaattggacgacctggtccaaag
ggagagcctggtttaaggggtgacaagggtgaaattggattaactggagcaaagggtgtt
gcaggttcaactggcaagaatggaactgatgggcaaaaggggaaaattggacgaattgga
actcccggttgtaaaggcgatccaggcgacaagggaccagatggctacccaggagatgtt
ggggaaactggaccattagtgacaaaggagaaaagggtgacatgggccttcctggaaagc
caggcccccccaggccctaagggtaatccaggtccaaagggtgaaagaggaagccaagga
aatccaggacagcctggacaaagagggagtccggggagaaagggttcacctggggcaaaa
ggcgaacaggggaggagaggaaacccgggagtaaaaggagcacaaggaaacactgggcca
aaagggacaaagggagaacgaggcccggagggaagcagaggtcggcctggggaaaatgga
ctcaagggcgcaaagggcgaactgggactaccgggaccgaggggtcagccaggagaacca
ggcacctctggacgaaatggcacgatgggagatcctggagattcaggaccaaggggagac
actgggccacttggaccaaagggtgacagaggaaggcaaggtttcagctatcctggatca
aggggaccgcctggagacaggggtgcaccaggtaggagaggacccacagggagcagaggt
gactgtggcgccaaaggagaatccggaaataaagggccttcaggagcgcctggtgaacca
ggccagtcagggccgccaggagaaagagggcctagaggggaacgtggacctgatggggat
tcaggaccagcaggcgattctgggctcactgaatgtgatgtcatgaactacatcagagag
acgtgtggttgctgcgactgcgagaagcactgtggagctatggacattgtgtttgtaatt
gatagctcagagagtgtcgggctgacaaactttaccctggagaagaactttgttatcaac
accatcaacaggctgggatctatggcgcccgaacctacatcaacaactggcacgagagtt
ggagttgtacaatacagtcacaatgggacctttgagagcattcgtctcgatgacccaaac
ataaactccatgactgcattcaaaactgcagtgaagaatctgaggtggattgctgggggc
accttcaccccctctgctctgaagtacgcctatgataacctcatcagggacagcaagaga
gcccgatccaaagtgtccgtcgtcgtggtcacagacggccgctttgaccctcgagacgac
gacaatcagctcacatacctctgcaacgaccctgctgtggtggtgaatgccatcgggata
ggggacatgtttgacaccagacacgacagcgagactctggtgtcaatcgcgtgcaacaag
aaggaccgggctactgagatgaggcgctacagcgacttggtggctgatgaattcttagaa
aagatggaaactgtcctctgtcctgatccagttattaagtgccctgatctcccctgtaca
agtgaacttgacttagctccttgtgttgagcggcctgtggatttggtatttctattggat
ggttcagagcgtctcggggagagaaacttcctccttgttcgtgaatttgttcagaaggtt
gcagacaggctgggactggccaggaccaggaccgatcgaaagcgagcccgtctggcactg
atggagtttggcaaggagtcagacaatcgggtggccttccctctaacacatgaccttgcc
cagattgttaacagcttaacagctttacagtatctagattcttcttcaagcgtggcgccc
ggcatcatacacgccatcaacaacatcctggttagaggaggcgcccggcaaacgaggccc
aatgcagagatttcattcgttttcattacagatggcgtcactaacagcgacaacctggac
gaggcgatcagtgccatgcgtcgtcacgaggtggtctccacggtgattgccacaggaagt
gatgttgatcaagaagtcctaacaaagctggctatgggggaccagcacgccatcttcaaa
gcagaaaaattctcagattttttaaggtccagtatgtttgatcgtttcatccggtgggtg
tgttag
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