Oreochromis niloticus (Nile tilapia): 102075815
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Entry
102075815 CDS
T06104
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04510
Focal adhesion
onl04512
ECM-receptor interaction
onl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102075815
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102075815
09142 Cell motility
04820 Cytoskeleton in muscle cells
102075815
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
102075815
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Others
102075815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102075815
NCBI-ProteinID:
XP_005450798
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Position
LG22:32407077..32443250
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AA seq
949 aa
AA seq
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MALKVSGLRRKQPGHLLMSAYSPICVALLSFLFTPALGQLDLNRLDGDSVCPPIRSGQDD
LPGFDLITQFQLDVIPLKGVRKVDGSTNLQVAYRLDREANFQIPTILNFPRGFPDEYSFM
TTFRMIKSTVSKVWNIWQIVDEDGYKQAGLRLNGDEQALEYFLTGPDGNLQTVTFPGLSV
LFNTKWHKVMIGVEHDQVTLYVDCQPVDQKPIKGKGSINTEGDTLIGRLDADPNASVVFE
LQWMLIHCDPKRAQRESCNELPPSEMYANAEPEKSIPGPPGTPGPEGPRGPAGENGRDGR
DGLPGPPGSPGAPGSKGEQGEIGLPGQRGLPGLPGPAGPAGPMGPRGPVGERGLPGFPGP
PGPAGPAREGPPGPPGKPGTPGDEGNIGPEGPPGPRGGPGVPGPPGPPGPPGRVGPPGAS
NEGSGEACPAACPAGPQGLPGLPGMKGHKGLDGEPGKDGVPGDKGEPGKQGPQGPPGRMG
DDGQRGPIGIPGTPGEKGDRGPPGFNGVPGPTGPPGAPGVEGMRGRPGLPGPKGEDGAMG
AQGSQGPPGEKGDTGEPGNNGLDGSPGVDGAKGEPGTPGAVGVRGIVGIPGLPGKPGVAG
TPGEKGSTGAEGPVGPAGLPGKTGEPGKDGADGKPGDKGATGQTGKQGPVGPAGPPGIQG
EKGAKGNPGDKGMKGHTGHKGDLGPVGPVGPKGSQGDKGMQGDPGIKGDQGPPGVHGIRG
ERGEKGQRGITGADGRPGQPGHEGLTGPMGARGLEGEPGLPGAPGPRGLPGPKVSDEKLR
EMCSAVVEEQLAEFMKELSKKPAAIGAPGTPGPAGPPGLPGPAGAAGAAGAPGPMGPKGP
PGYFGLPGAPGQKGDAGERGDKGSRGEDGVGIKGSQGAPGAPGAPGAPGIGKDGRNGERG
ETGSPGIPGPVGPRGLPGSPGFCDPSTCIGRHPPLYMVGGKKSTGYKNP
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccctcaaagtctccggtttgaggagaaagcagccgggccatctattgatgtctgct
tactcccccatctgtgtggctcttctgtccttcctcttcactccagctcttggtcaactg
gacctgaacagactggatggcgattctgtctgcccgccaataagaagtggccaagatgac
cttccagggtttgatctgatcactcagttccagctggatgttattcccctgaaaggtgtg
aggaaagtggatggctccacaaacctccaggtggcctaccgcctcgacagagaggccaac
ttccaaattccaactatactcaactttcctcgcggcttcccagacgagtactccttcatg
acgaccttccgcatgatcaagagcacagtgagcaaggtgtggaacatctggcagatagtt
gacgaagatggctataagcaggccggattacggctgaatggcgatgagcaggctctggag
tacttcctgacaggccccgatggaaatctgcagacagtcaccttccccggcctttctgtg
ctctttaacaccaagtggcataaggtgatgatcggcgtagagcacgaccaggtcacgctg
tatgtggattgccagcctgttgatcagaaacccatcaaaggcaaaggctctatcaacaca
gagggagacactcttattggcaggctggatgctgatcccaacgcctccgtagtgtttgag
ctccagtggatgctgatacactgcgacccaaagagagcccagagagaaagctgcaatgag
ctgcctccctctgagatgtatgccaatgctgagcctgaaaaatcaatcccaggcccccca
ggtactcctggcccagagggcccccgagggccagcaggagaaaatggcagagatggaaga
gatggtcttccagggcctcctggcagtcctggcgctcctggcagcaaaggggagcagggg
gagatcggtcttcctggacagagaggcctgcctggtcttccaggacctgctggtccagca
ggtccaatgggtcccagagggcccgtaggagagagaggacttcctggctttcctggacct
ccaggtcccgctggtccagcaagagaaggacctcctggacctccaggaaaaccaggaacc
ccaggagatgaggggaacattggaccagagggtccacctgggcctagaggaggacccggg
gttccagggcctcctggccctcctggcccaccagggcgtgtgggaccgcccggtgccagc
aatgagggaagtggggaagcttgtcctgctgcctgccctgctggaccccaggggctgcct
gggctaccagggatgaagggacacaaaggtctggatggtgagcctggaaaggacggcgtt
cctggagacaagggggaaccaggaaagcagggtcctcaaggaccaccaggtcgcatggga
gatgatggacaaagaggacccatcggaatccctggaaccccgggagagaagggagacaga
ggcccacctggcttcaacggtgtcccaggacccactggtcctcctggagctcctggtgtg
gagggaatgcgtggacgtccgggtttgccggggcctaaaggcgaagacggagccatgggc
gctcagggatcacagggtcctccaggggaaaagggagatactggagagcctggcaataat
ggcttagatggaagtcctggagttgatggcgccaagggagagcccggcactcctggagct
gttggtgtcagggggattgtgggtattccagggctgccagggaagccgggagtagctgga
acccccggtgaaaagggcagcactggtgcagagggacctgtcggaccagctggacttcct
ggaaaaactggtgagcctggaaaagatggagcagatggaaaacctggagataaaggagca
actggtcaaacaggaaaacaaggaccagttgggcctgcaggtccgccaggaatccagggt
gagaaaggagctaaaggtaaccccggtgacaaaggaatgaagggccatacaggccacaaa
ggtgatctgggacccgttggaccagtaggaccaaaaggaagtcagggggacaaaggaatg
caaggagatcctgggataaagggagaccagggccctcctggtgttcatggaatcagagga
gagcgtggggagaagggccaaagaggaattacaggagccgatggcagaccaggccagcca
ggacacgagggtttgacgggtccaatgggagctcgagggctggagggagagccgggcctt
cccggagcaccaggcccgagaggtctacctgggccaaaagtgagtgacgagaagcttcgg
gaaatgtgttcagctgttgttgaagagcaattagctgaatttatgaaagaactctcaaag
aagccagcagccattggtgcccctggtactcctggacctgcaggtcctcctggactccct
ggaccagctggagccgcaggagcagcaggagctccagggccaatgggtcccaaaggccct
ccaggctactttggacttccaggcgcaccaggacaaaaaggtgatgccggggagagggga
gacaaggggagcaggggagaggatggtgtgggaatcaaaggaagccaaggcgcaccaggt
gcaccaggtgcacctggcgcccccggcatcggaaaggatggtagaaacggagagcgtggt
gagacaggtagtcctggtatccctggacctgttggtccaagggggctcccaggatcacct
ggcttttgtgacccatcaacctgtataggcaggcatcctccactttatatggttggtggg
aagaaatccactggctacaaaaacccatga
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