Oreochromis niloticus (Nile tilapia): 109196092
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Entry
109196092 CDS
T06104
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109196092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
109196092
Enzymes [BR:
onl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109196092
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109196092
mRNA degradation factors
3'-5' decay
Pan complex
109196092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Motif
Other DBs
NCBI-GeneID:
109196092
NCBI-ProteinID:
XP_025757300
LinkDB
All DBs
Position
LG20:9758999..9768065
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AA seq
1070 aa
AA seq
DB search
MPTSPKEFTPADLAELKKIFEALNTRLGEYWANHRRTMNAPHWTPHWTPHWTPHWSPHWS
PQWTPGGLEPSMNSYLIPNLHQDVGMNTQELAVTVPKPVHVKKGMFSELHSNVSEAGIPV
TATHFDLQREMLWMGNYTGHVQSFLGPTMAHYSSFQVHATDAIRHMQSLDTGVLFLSKCN
LRCYTCGGLVMSDYWMEEGADMHSLLMTDNMLLMGELQNYVAEVDLNTLQETQKVTLRDL
HTFRTQNFDAFPGGLSDFDVHGNLLAVSGFSSRGPNERFLMVYDLRRMRAATPLWVHVDP
FFVRFIPTYTSRLAIISQTGMKLAWNHNLWPCSPIPTVQATPSSRWAPGMEPEIPQTIET
VGFNSYVENPYACPFNQVPANEEGTPGHGYYNHVPESPTQSDEEPLLHTVPEKYRKVTIK
YSKCGREDFDFKHYNRTLFAGLEPQIPNAYCNCMIQVLYFMEPVRCLVQNHSCHKEFCLA
CELGFLFHMLDLSQGDPCQASNFLRALRNIPEAKEMGLILSNCEETTGTVELGRLIQRWN
HFMLYQLFQETQEQEDPRAYRTPRSSSLGSSGDSVIRELFCSEVENRSLCLCGIETVHSS
LMLLFNMHYPDSQGKRMKEHDFAEILKKSICLQQRSHTWCENCDKYHLTVQTRNIRRLPD
VLVINCEVNSSKEAEFWKVQAEYAFNKSMQKTDQDQRHVWIPATLKMSLSKSQRLEISSW
PEGEELSAAEEAEGASLYDLVVTVPHILDSGLVAHIKVGETYHQRKEGVSRQQWYLFNDF
LIESIEKSEAAQFDVSWKVPAILCYAKRNYHTKYDLRSECQHNQSEVKSDLYRTQKQRKT
DATFIPLTVSEMPRAGDLVGLDAEFVKLSEEEAVLHSDGTKSTITPSQMSVARITCVRGQ
GPNEGVPFIDDYISTQEQVVDYLTKYSGIEPGDLDATVSSKHVTTLKSTYLKLRFLIDSG
VCFVGHGLQKDFRVINLVVPKDQVIDTVHLFRLPYKRMISLKFLAWYFLGLNIQGETHDS
TEDSCTALKLYRKYLELYQEGGNHYVTKVLYEVYDKGFQLNWKVPDLDAR
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgtctcccaaagaattcacacctgctgatttagctgaactcaagaagattttt
gaagctctcaacacaagattaggtgaatactgggccaaccatcgcaggactatgaacgct
cctcactggactcctcactggactcctcactggactcctcactggtctcctcactggtct
cctcagtggactcctgggggactggagccctccatgaactcatatctgattccaaacctc
caccaagatgtgggaatgaacacacaggagctggctgtgaccgttcctaagcctgtgcac
gtaaagaaggggatgttttctgagctgcacagtaatgtttcagaagctggcatcccggtc
actgcaacacattttgacctgcagcgggaaatgctctggatgggaaactacacgggtcat
gtacaatccttccttggacctacaatggcacactactcttctttccaagtgcacgcaact
gatgccatcagacacatgcagagtttggacacaggcgtgctcttcctttctaaatgcaac
ctcagatgttacacttgtggaggcctggtcatgtctgattattggatggaagaaggagct
gatatgcacagtctcctcatgactgataacatgctgctcatgggggaattacaaaactat
gtggctgaagttgacttgaatacacttcaagaaactcaaaaagtgacccttcgagacttg
catacatttaggacacaaaactttgatgcatttcctggcggcctgtcagactttgatgtt
cacggaaacctcttggctgtgagtgggttctccagccgagggccgaatgaacgtttcctc
atggtgtatgacctccgcaggatgcgagctgcaacccccctttgggtgcatgtggatccc
ttcttcgtgcgcttcattcctacctacacgtcacggctcgcaatcatctcacagacaggt
atgaagctggcctggaatcataacctgtggccctgctctcccatccccactgtccaggct
acacccagctcaagatgggctcctgggatggagccagaaatcccacaaactattgaaaca
gttggcttcaacagttatgtggaaaatccttacgcctgcccctttaaccaggtccctgcc
aatgaagaagggacacctggtcatggttattacaaccacgtccctgaatctccaacacag
agtgatgaagagccgctccttcacactgttccagaaaagtacagaaaggtgacaattaaa
tactctaaatgtggacgggaagattttgacttcaaacattacaacaggacgttgtttgct
ggcctggagccgcagattcccaacgcctactgtaactgcatgatccaggtgttatacttc
atggagccagttcgctgccttgttcagaatcattcgtgccacaaggagttttgtttagct
tgtgaactcggcttcctcttccacatgttggatttgtcacaaggagatccatgtcaggcc
agcaacttcctcagagcacttcgaaacatccctgaagccaaagagatgggcctgatcctc
tcaaactgtgaggagacaacgggaacagtcgagctaggtcgcttaatccagagatggaat
cacttcatgctctaccagctcttccaggagacacaggagcaggaggatccacgggcctac
aggacacccaggagcagttctctgggctcctctggcgactctgtcattagagagctgttt
tgttctgaagttgagaaccgcagcctgtgtctctgtggcatagaaacagtccactcctcc
ctcatgttgctgttcaacatgcattaccccgactctcaaggaaaaagaatgaaggagcat
gactttgctgagatcctgaagaaaagcatctgcctgcagcagagatctcacacatggtgt
gaaaactgtgacaagtatcacctcacagtgcagacacgcaacattcgacgtctcccagat
gttttggtgataaactgtgaggtgaacagcagcaaagaggccgaattctggaaggttcag
gccgagtatgccttcaacaaatccatgcagaagacagatcaggatcagcgtcacgtgtgg
atccccgccactctcaagatgtccctcagcaaaagtcagagactggagatcagcagctgg
cctgagggcgaggagttaagtgctgctgaagaggcggagggagcttctctgtatgacttg
gtggtcacggtgccacacatcctggactctggtctggtcgcacacatcaaagtgggtgag
acctaccatcaaagaaaagagggagtctctcgccagcagtggtacctcttcaatgacttc
ctcattgagtcgattgagaagagtgaggctgcacagtttgatgtgagctggaaagtgcca
gccatcctgtgttacgccaagagaaactaccacaccaaatacgacctccgcagtgagtgt
cagcacaatcagtctgaagtcaaatccgacttatatcggactcagaagcagaggaagaca
gacgccactttcatcccactgacagtcagtgagatgccgcgggctggtgacctggtgggg
ctggacgctgagtttgtaaagctcagtgaggaggaagcagtgctgcacagcgacggcacc
aaatcgaccattacgcccagtcagatgtctgtggccaggatcacctgtgtgaggggtcag
ggacccaacgagggggtccccttcatcgatgactacatctccactcaggagcaggtggtc
gactatttgacaaaatactctggaatcgaacctggagacctggatgccacagtatcctct
aagcacgtgaccacgctgaagtcgacctacctgaagctacgcttcctcatcgactcagga
gtttgcttcgtcggccacggcctgcagaaagactttcgtgtcattaatttagtggttccc
aaagatcaagttatcgacactgtccacctcttccgattgccctacaagaggatgatttct
ctgaaattccttgcttggtattttcttggcctcaacatccagggagaaacccacgacagc
acggaggactcatgcacggccctgaagctttacaggaagtacctggagctgtatcaggaa
ggagggaatcattacgtgacgaaggtgctctacgaagtctacgacaaaggcttccagctg
aactggaaagtcccggatttggatgcgagatag
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