Ogataea parapolymorpha: HPODL_01794
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Entry
HPODL_01794 CDS
T08137
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11772
SWI/SNF complex subunit SWI3
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_01794
03036 Chromosome and associated proteins [BR:
opa03036
]
HPODL_01794
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SWI/SNF complex
HPODL_01794
Chromosome and associated proteins [BR:
opa03036
]
Eukaryotic type
Chromatin remodeling factors
SWI/SNF complex
HPODL_01794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
TPR_HPS5_insect
Myb_DNA-binding_7
Motif
Other DBs
NCBI-GeneID:
25771251
NCBI-ProteinID:
XP_013933790
UniProt:
W1QA46
LinkDB
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Position
VI:complement(1168160..1170037)
Genome browser
AA seq
625 aa
AA seq
DB search
MEEKQRLSPSPGRDEQGVGLDHNETNAQQNVDGVVQVADEINYEDSEVGVNEENEREAED
DEEANNVDTNIISESVEQEHIHDEARKTTGSSSEVKKEPGAEGIPLPQEGSADMEENKAA
MGPQEQVSSDYMFTSRPQMESTISLSSLQKQTHTIVLPSYSAWFDMKKIHKIEKESLPEF
FNGSNKNKTPQIYARYRNFMVNTYRLNPNEYLSFTAVRRNLVGDAGTLLRLHKFLDKWGI
INYQVNPETRPVPLEPPYTGDFTVDFDTPRGLFPFESYKPPVELPDMSKVKELLNSSNDG
SAISNGEPNKRRKIIKPDINKGWSQADLEKLVEGVRQFPNEWHKIAEHVGNKSPEQCIIR
FLQFPIEDEFLEKNREHLGPLKYVPNLSFSPNDNPIMSTLAFLTSIVDTEAAVAAADRAK
KVMDDKLTQLLDGSGQSEETKQIKDEPKEDSNGEQDRMEVEDPLTDVKDAANTSFGLAAA
RSHVFANYEEREMNKAMTAIVNNELKLVELKLNKLSKLDRLFEYQKKQLSKKNDELFLDR
LSFFKTANTVSSKLMQAIELLQDKSDGGEKVKKLVLDARELIMKPPKKSLNVLGFESKDE
ERSLGEEEVKPVSYEAPQLYRYWSG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcaaagattgtcgccaagtcccgggcgagatgaacaaggcgttggactg
gaccacaacgagactaatgcacaacaaaacgtcgatggggttgtacaagttgcagacgag
atcaactatgaagactcggaagttggggtcaacgaagaaaacgagcgggaggccgaggac
gatgaggaagcaaacaacgtagacacgaacataatatccgagtctgtggaacaggaacat
attcatgatgaagccagaaaaacaacaggtagttccagcgaggttaaaaaagagcccggt
gccgagggtattccgttgcctcaggaaggaagcgcagatatggaagaaaacaaggccgca
atgggcccccaggagcaagtttccagtgactacatgttcacctcgagaccgcaaatggaa
agcacaatcagcttgtcgtcgctacagaagcaaactcacacgattgttttaccgtcttac
agtgcatggttcgacatgaagaagatccataaaatcgagaaggagtcgcttccagagttc
ttcaacggaagcaacaaaaacaaaactcctcagatatatgctcggtaccggaactttatg
gtaaacacgtacagactaaatcccaacgagtacttgtccttcactgccgtcagaagaaac
cttgttggagatgctggcacattgctccgactacacaaattcttagacaaatggggaata
atcaactaccaagtgaacccagaaacgcgccctgtgccgttagagcccccgtacacggga
gacttcacagttgacttcgacactccacgaggattatttccttttgagagctacaaacct
cctgtggagcttcctgacatgtcgaaagtgaaggaactactgaactcgagcaacgacggc
agcgcaatatcaaatggagaaccgaacaaacggcggaaaattataaaaccagacatcaac
aaaggctggtctcaggcggatttggagaagctggttgaaggagtcaggcagtttcctaac
gaatggcacaagattgcagagcatgttggcaacaagagtccagagcaatgtattatacgc
tttttgcagttcccgatcgaggacgaatttttggagaaaaacagagaacatcttggccca
ttgaagtatgtgcccaatttatcattttcgcccaacgataaccctataatgtcgactttg
gcctttttgacgtctatcgtggacacagaggcggctgttgctgctgcagatcgggcaaag
aaggtgatggatgataaattgactcaactgctcgacgggtcaggccagagcgaagagacg
aagcagataaaggatgagcctaaggaggactcaaacggggagcaggacagaatggaagtg
gaagaccctctcacggacgtgaaagatgcggcaaacacgtcgtttgggcttgcggcagcg
cggtcgcatgttttcgccaactacgaggagagagagatgaacaaagctatgaccgctatt
gtgaacaacgagttgaagctggtggagctgaagctgaacaagctgagcaagctggacagg
ctatttgagtatcagaagaaacagctctcaaagaagaacgacgagctgttcctggaccgt
ctttcgttcttcaagactgccaacactgtgtcgtcgaaattgatgcaggccatcgagctg
ttgcaagacaagagcgacggcggagagaaagtgaagaagctagtgttggacgccagagag
ctgatcatgaagcctccaaagaagagcctcaatgtgcttgggttcgagtcgaaggacgaa
gagcgcagcctcggagaagaggaggtgaagccggtgagctacgaggctcctcaattgtat
agatattggtcaggataa
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