Ogataea parapolymorpha: HPODL_03960
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Entry
HPODL_03960 CDS
T08137
Name
(RefSeq) Superkiller protein 3
KO
K12600
superkiller protein 3
Organism
opa
Ogataea parapolymorpha
Pathway
opa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPODL_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opa03019
]
HPODL_03960
Messenger RNA biogenesis [BR:
opa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
HPODL_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_14
TPR_16
TPR_8
TPR_1
TPR_11
TPR_22
TPR_CcmH_CycH
TPR_17
TPR_12
TPR_9
ANAPC3
TPR_7
TPR_Slam
TfoX_C
DUF6276
Motif
Other DBs
NCBI-GeneID:
25773391
NCBI-ProteinID:
XP_013934214
UniProt:
W1QBB3
LinkDB
All DBs
Position
V:complement(320083..324327)
Genome browser
AA seq
1414 aa
AA seq
DB search
MSVNSLLKAAKQSFKDDDPNYVIYCCDKIIEEHDKNNYFAYIFKGKALHMLKDDAKAFAS
YEQAAKINPDEILAWKGMLELQRDSTDYKRFFAVVTGLANSLLAKNDPLTEVVTEVRDYL
KKFKRKIPELTEYYYRQVIPGAELGDLMGEMFEKPEIALYQLINIVQEKQNNYVKSQLFK
NKLTGISNMSEKSQLAYNKVIVTAHKQFKLSELCQRYIDICTDDFYRRKMESRLLEQKYE
LMKASPPEEKKQLFAEVFDMAHGMVIVNNPVQHAWDLYLDWLDLKSFDSLDLIVVADYIK
LFGNVGLGAVLYAFVSSDISPFDRKRVKEYLKVEKKSKRRHNRKNKRVLKNIKTTEDTED
DPNDESALPLEEAEQGNSSEDLSAADVLELMIQGIKVAAESILAHRIVVAYYLHLREYES
ALEYAKQLVTLVSKEQKKTLLELKNTKKDSLLSLATAYTYYEPPRHFSQALRLYDSVLAS
SPTDVQARIGKGLILVEQKNYAAASELLEKVLEDAPDHLQANLEYSWSIIQIGRYSEGRE
GLQKAYKLIDGTDPNSLEMRGTTLWRMAESYLMELKSLESPDEETAAGLVKSAFNLLIEA
LKQSESLSAPYSSLGYIYLTFYDNQTRALKCLTKAFELNAGDMLAARELANYFSANKDWE
MVEVVCQRVIDSEQGRLAMLSLDEDGSWPYRMLGCAALERQDDSKAIELFQNGLRMNSSD
VDSWIGLGEGYLARGRLDAALKVFNKALELEPDNWHGIYLFAVVLGEMGEFQDSIFHLEK
IADTRPDELCIVNRLAETLIMKTNYEISNSHIARSMDTALKAFEALRKAADLDPHAPSLW
RLLSELLKLLLTVESHIEHIPFDDLEFIIRRVPETSSVRLLKEMGEDENYNKLKTSNSKV
DKTCYYMIESARVALSVTGDGAARLLRSSVTYNLGVAYLVAFLRLEKTHLQECSIKAFKQ
AIVLENDNPEYWNSLGIVSLVQSPKVAQHCFIKASSLSPRDPAPWTHLAVLYMHHGDLDL
ANQCFLRVQSLAPGQATCWTGRALVEEAKGDNKSASQLLTHAHVMSNGKSPLSMLLYSFS
VVKSLIGSEIDEQNLDSVQELNVANLSILSYLKYYPKDRLALQVATLIIERVRDFETGLR
YSQQLCALLEKKYEQENSPEIAVALSTALAQLSRMYLGSQEYDQAIEVSEQSMDLLEEID
ELTEEVQKIMLSSLAVLGLSSFFKDDFDSALVEFKKILDSFPDSRRIVVLIAQVLHDCNT
EDTKQAAIDELFNHIENYGTSLLVALTLASISLVENLEEFYPAIKEELESLSLKERIDDT
ASSVPFFLEQLESRMGTGTATIWQRNAFMFPADAYTWKKLDRHVHLNVCLNSKSVDAGEL
SNAYIETGELRAIQRSLLLNPSNVDGYIALKGCS
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaatagtctgttaaaggctgccaagcagtcattcaaagatgacgacccgaat
tacgtgatatactgctgcgacaagatcattgaggaacacgacaagaacaactactttgca
tatatcttcaagggcaaggcgctgcatatgttgaaggacgatgccaaggcatttgcgtcc
tacgagcaggctgcgaagataaatccggatgaaatcctcgcatggaagggaatgctcgag
ttgcaacgggatagtaccgattacaagcggttttttgcggtagtgaccgggctggccaac
agtttgcttgctaagaacgatcctctcacagaggtggtgacagaggtgcgagattatctg
aaaaaattcaagcgcaagatcccagagctcacagagtactactatcgccaggttatccct
ggcgcagagcttggcgacctgatgggagaaatgtttgaaaaaccagaaatcgcactctac
caactgattaacatagtacaggaaaagcagaacaactacgtgaagtcgcagttgttcaaa
aacaagctgaccggaatctcaaacatgtctgaaaaaagccagctggcgtacaacaaggtg
attgtgaccgcacataagcagttcaagctgtcggagttgtgccagagatatatcgatatt
tgcacagacgacttttatcgccgcaaaatggagtcgcgtttgttggagcagaaatacgag
ctcatgaaggcgtcgcctccagaagagaagaagcaactgtttgcagaggttttcgacatg
gcccatggcatggtgattgtgaataatcctgttcagcacgcgtgggacctctatttggac
tggctggacctgaaatcgttcgattcgctggatctcatcgtcgttgccgattatatcaag
ctgtttggaaacgttgggttgggcgcagtgctgtatgcttttgtttcctcggacatttct
ccttttgatagaaaaagagtcaaggagtatctcaaggttgagaaaaaatcgaaaagaaga
cacaacagaaagaacaagcgtgtcctgaaaaacatcaaaaccacagaagataccgaggac
gacccaaacgacgagtccgctctacccctggaggaggcagagcagggaaatagctctgag
gacctctctgctgccgacgtgctcgagctgatgatccagggcattaaggtggcagcggag
tcgattcttgcgcaccgcatagttgtcgcttactatttgcatctgcgggagtacgagagt
gctcttgagtatgccaaacaactggtgactctcgtttcgaaagagcagaaaaagacgctt
ttggagctcaagaacaccaaaaaggactctctgctgtctctggccacggcatacacctac
tacgagcctccacggcacttttcacaggcactaagactctacgactctgttctagccagc
tcgccaacggacgtccaggccagaattggcaagggtctcatattagtggagcagaaaaat
tacgcggccgcctcagagctattggaaaaggtgctggaggacgcaccggaccacttacaa
gcgaatcttgagtacagctggagtattatccaaattggccgctattccgaaggacgcgag
ggactgcaaaaggcgtataagcttattgacggtacagaccccaactccctggaaatgcgt
ggcaccacgctctggcgcatggctgagtcatatttgatggaattgaagagtctggaaagc
ccagatgaggaaactgctgctgggctggtaaagtcggcgttcaacttgctaatcgaggcc
cttaaacagtcggaatcgctctctgcgccttacagttcgctaggttacatttatctcacg
ttttacgacaaccagacacgggccttaaagtgtctgaccaaagctttcgaattgaacgcc
ggagacatgcttgctgcgcgggagctggccaattatttcagtgccaacaaagactgggag
atggtggaggttgtttgtcaaagagtgatcgacagcgaacagggacgcctggccatgcta
tccttggacgaggacgggtcctggccgtacaggatgcttggatgtgctgctcttgagcgc
caggacgacagtaaggccatcgaactgttccaaaacggtcttcggatgaactcctcggac
gtggactcgtggatcgggctgggcgaagggtatcttgctcgtggacggctggacgccgcg
ctgaaagttttcaacaaggcgctggagctggaaccggataactggcacggcatctacttg
tttgcggttgttttaggcgagatgggagaattccaggacagcatattccacttggagaaa
attgccgacaccaggccagacgagctgtgcattgtcaatcggctcgctgagacgctgata
atgaagaccaactacgaaatcagcaacagccacatagcacggtcgatggacacggcactc
aaggcgttcgaggctctcagaaaagcagcagatttggatccacatgctcccagtctctgg
cgtctgctttcggagctgttgaaacttctgctgaccgtcgaatcgcacatcgagcacatt
ccgtttgacgatctagaatttatcattcgccgtgtcccggagacaagcagcgtacggttg
ctaaaggagatgggcgaagacgagaattacaacaagctaaaaacaagcaacagcaaagtg
gacaagacgtgctactacatgatcgagagcgcgcgcgtagcactttccgtgaccggtgac
ggcgcagcacggctcctgcgctcctcggtgacgtacaacctcggcgtggcctatctggtg
gcatttctgagactcgaaaaaactcatctccaagaatgctccatcaaggcgttcaaacag
gcgatcgtccttgaaaacgacaacccggagtactggaactcgttaggaattgtctctctg
gtgcagagcccaaaagtggctcagcactgcttcatcaaggcctcatctctgtcgccacgt
gacccggccccgtggactcatctggcggtgttgtacatgcatcacggcgacctggacctt
gcaaaccagtgtttcttgcgggtgcagtcgcttgctccggggcaggcgacctgttggacc
ggaagagcgctcgttgaagaggccaagggcgacaacaagtcggcctcgcagctgctaacc
catgctcacgtgatgtccaacggaaagagccccttgtcgatgctgctgtacagtttttcc
gttgtgaaatcgcttattggcagcgagatcgacgagcagaacttggattctgtccaggag
ctcaatgtggccaatctttccatcctgagctacctcaagtactatccaaaggataggcta
gcattgcaagtggccactttgatcattgagcgagtgcgtgactttgagacggggcttcgc
tactcccagcagctctgtgccttactggaaaaaaagtacgagcaggaaaattctccagaa
atagccgttgcgctgtccactgcccttgcccagctttcaagaatgtatctgggctcgcag
gagtacgaccaggcgattgaggtcagcgagcagtctatggacttgctggaagagatagac
gagctgaccgaagaggtgcagaaaatcatgctctcgtcgctggctgtgctgggactgtct
agtttcttcaaagatgacttcgactcggcgctggtggagttcaagaaaattttggactct
ttcccagactctaggagaatcgttgttctgatcgctcaagttcttcatgattgcaacaca
gaggacactaaacaggctgccattgacgagctgttcaaccacattgagaactacggaacg
tcgctgctcgttgcactgactctggcctccatctcgctagtcgaaaaccttgaagagttc
tatccagcaatcaaggaagaattagagtcgctgtccttgaaagagagaatagacgacaca
gcaagcagcgtgccatttttccttgagcagctggaatcaagaatgggcacgggaacggct
accatctggcagagaaacgcatttatgttcccggcagacgcatacacctggaaaaaactg
gatagacatgtgcatctaaacgtttgcctgaactcgaagagcgtggacgctggcgagctg
agtaacgcgtacatcgagacaggtgagctacgggcgatccagcgctctcttcttcttaat
ccaagcaacgttgacggctacattgcactaaagggatgttcatga
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