Ochotona princeps (American pika): 101522303
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Entry
101522303 CDS
T07609
Symbol
MSH3
Name
(RefSeq) DNA mismatch repair protein Msh3
KO
K08736
DNA mismatch repair protein MSH3
Organism
opi
Ochotona princeps (American pika)
Pathway
opi01524
Platinum drug resistance
opi03430
Mismatch repair
opi05200
Pathways in cancer
opi05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101522303 (MSH3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101522303 (MSH3)
09162 Cancer: specific types
05210 Colorectal cancer
101522303 (MSH3)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
101522303 (MSH3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opi03400
]
101522303 (MSH3)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101522303 (MSH3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
Motif
Other DBs
NCBI-GeneID:
101522303
NCBI-ProteinID:
XP_012782727
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All DBs
Position
11A:2539592..2596331
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AA seq
577 aa
AA seq
DB search
MKTRGSLLWVLDHTKTSFGRRQLKKWVTQPLLKLRDINARLDAVSEVLHSESSVFEHIES
NLHKLPDLERGLGSIYHKKCSTQEFFLIVKALCQLKSELQALTPAVSAQVQSDLLRTCAL
DIPELLSPAEWYLHILNEHAAKIGDKTELFNDLSDFPLIKKRKDEIQEVTEKIQIHLQDI
RKILKNPSAQYVTVSGQEFMIEIKNSSVSCIPTDWIKVGSTKAVSRFHSPFIVEHYRRLN
QLREQLALDCNVEWLGFLETFSGHHHALCKAVRHLATMDCIFSLTKVAKQGNYCRPTVQE
ERKIIIKNGRHPVIDVLLGEQNQYVPNSTNLSGDSERVMIITGPNMGGKSSYIRQVALIT
IMAQMGSYVPAEEATVGLVDGIFTRMGAADNIYKGRSTFMEELTDTAGIIRKATAQSLVI
LDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKHYSQQVGNYHMGFL
VAEDEPRQDPGEEEPVPGFVTFLYQITRGVAARSYGLNVAKLADVPGEVLRKAARKSQEL
EGLVNTKRKRLKYFTQLWAAHSAQDLREWTEELQDRL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccagagggagtttactttgggtcttggatcacacaaagacttcatttggacga
cggcagttaaagaagtgggtgacccagccactccttaaattgagggacatcaacgcccgg
ctcgatgctgtatctgaagttctccattcagaatccagtgtgtttgagcacatagaaagc
aacctgcataaattgcctgacctcgagagaggacttggtagtatttaccacaaaaagtgt
tccactcaagaattcttcttgattgtcaaagctctgtgtcagctgaagtcagaactgcaa
gcgctgacacctgccgtgagtgcccaagtgcagtcggacctgctgcggacgtgtgctcta
gacatccctgagctcctcagcccagcggaatggtacctgcacatccttaacgagcatgct
gccaagattggagataaaactgaattattcaacgacctctctgacttccctttaataaaa
aagaggaaggatgaaattcaagaagttacagagaagatccaaatacatttgcaagacatc
cgaaaaatactgaaaaatccttctgcacagtatgtgacagtgtcagggcaggagtttatg
attgagataaagaattcttctgtgtcttgtataccaactgactggataaaggttggaagt
acaaaagctgtgagtcgcttccactctccttttattgtcgaacattaccgacgtctgaat
cagctccgagagcagcttgccctggactgcaatgttgagtggcttggttttctagagacg
ttcagtggacaccatcatgccctgtgtaaggcagtgcgtcacctagcaacgatggactgc
atcttctccctgaccaaggtcgctaagcaaggaaattactgcagaccaactgtacaagaa
gaaaggaaaatcataataaaaaacggaaggcatcctgtgattgatgtattgcttggagag
cagaatcaatatgttccaaatagtacaaatttatcaggggactcggagagagtcatgatc
atcactggtccaaacatgggtgggaagagctcctacatcaggcaggtcgcactgatcacc
atcatggctcagatgggctcctatgtccctgcagaggaggctacggtggggcttgtggac
ggcattttcacaaggatgggtgctgcagacaacatatataaagggcggagcacatttatg
gaagaactaaccgacacagcaggaattatccggaaggcaacagcacagtccttggtcatc
ctggatgagctggggaggggcaccagcactcatgacgggatcgccatcgcctatgccact
ctggagtattttattagagatgtgaagtccctcacgctgtttgtcacccattacccacca
gtttgtgaactggaaaaacattactcacaacaagtgggcaattaccacatgggattcctg
gtcgccgaagacgaacccaggcaggacccaggtgaagaggagcccgtccctggtttcgtc
acatttctttatcaaatcacccgaggggttgccgccaggagctatggcctgaatgtggct
aagctggcagatgtccctggggaagttctgcggaaagctgcccgcaagtcgcaggagctg
gaaggattggtgaacacgaaaaggaaaaggttgaagtactttacacaattatgggcagcg
cacagtgcacaagatctgcgggagtggacagaggagcttcaagacaggctgtag
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