Occallatibacter riparius: MOP44_10550
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Entry
MOP44_10550 CDS
T08486
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
orp
Occallatibacter riparius
Pathway
orp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
orp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MOP44_10550 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orp03021
]
MOP44_10550 (rpoC)
03400 DNA repair and recombination proteins [BR:
orp03400
]
MOP44_10550 (rpoC)
Enzymes [BR:
orp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MOP44_10550 (rpoC)
Transcription machinery [BR:
orp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MOP44_10550 (rpoC)
DNA repair and recombination proteins [BR:
orp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MOP44_10550 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UWZ86360
UniProt:
A0A9J7BUQ5
LinkDB
All DBs
Position
2626016..2630206
Genome browser
AA seq
1396 aa
AA seq
DB search
MFRSNPFELTSPITDFDAIRIMLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARI
FGPVTDWECLCGKYKRMKHRGVICDKCGVEVTVSKVRRERMGHIELASPCSHVWFFKGLP
SRIGHLLDISLRDLESILYFESYVVVDPGDAPVREREIIKDENKFRELDQQFRPSGFKAM
MGAEAIKELLKRVNVDELAIELRERMKTEASAQKKIKYAKRLKVVEAFRKSSNKPQWMIL
DVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMDLHAPEVIVRNEKRML
QEAVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYHRLEQTGHCTTIKQAKEMVEMQEPVVWDILEEVIKDH
PVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIE
ASVLMLASHNILSPASGQPITVPTQDMVLGLYYLTKAHKGAKGEGRVFANTEEVLMALEA
KELETLSPIRLRYTGKVLDMTTAYDDQDLTHTEAVDFDGDYINTTVGRVILNDALPAGMP
FINGLLKKKGIGQLVNYCNQNLGLEVTVRMLDRIKSLGFQFATRSGLSVGLDDMVIPASK
YTVVEEADRKVIEVQKQYMDGAITNGERSNKVIQMWSAVTDKVADEMFGNMKRADEEGAM
NPIYIMADSGARGSKQQIRQLSGMRGLMAKPSGEVIETPITANFREGLTVLEYFISTHGA
RKGLADTALKTADSGYLTRRLVDVAQDVIVTEYDCGTSEGIDVTAIVESGEIIEPLRDRI
IGRVSLEKIKDYDGNVVIEINQQIDEDIASAIQGAGVEKVKIRSVLTCESRRGVCALCYG
RNLGSGRMVELGETCGVIAAQSIGEPGTQLTMRTFHVGGTASRVADQSRLDAKNNGTVRY
FNLNTVESKDGSQVAMNRSGSIAIVDDRNREKERYVVVYGARLKVKDGDKVKLGDLLAEW
DPYTYSILTEIGGTVQFKDLQEGITLNEEVDEVTGLSRWVVADAPDEKRQPTFVVKGSKG
SKRYLLPRGAHLMIEDGAEVGPGDVLAKIPKESTRTKDITGGLPRVVELFEARKPRETAI
ISEIDGVVRFGEVTKGQRKIYVTADNGEEKEYSVPRGTHVNVQEGERLRAGDPLMDGPLN
PHDILDVLGEKELQKYLVNEIQEVYRLQGVAISDKHIEVIVRQMLRWVRIDDIGDSNFLL
EQQVDRFRFNEEKNRVEKEGGRPPQGRPLLLGITKASLSTDSFISAASFQETTRVLTEAS
INGAIDNLRGLKENVIVGRLIPAGTGLEYYRNVQLSPELEEAAARVQQEVHAEIEAAERE
LEMMRQEGEAEEMAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
ttgttccgttcgaacccgttcgagcttaccagccctatcaccgacttcgatgccatccgc
atcatgcttgcgtcgcccgagaagatccggagctggtcgcatggtgaggtcacgaagcct
gaaaccatcaactaccgcacgttcaagccggaacgcgacggcctgttctgcgcgcgcatc
ttcgggcccgtcaccgattgggagtgcctctgcggcaagtacaagcgcatgaagcaccgc
ggcgtcatctgcgacaagtgcggcgttgaagttacggtctcgaaggtgcgccgcgaacgc
atgggccacatcgagctcgcttccccgtgctcgcacgtgtggttcttcaagggcctgccc
tcgcgtatcggtcacctgctggacatctcgctccgcgacctcgagtcgattctctacttc
gagtcctacgttgtcgtcgatccaggcgacgcgccggtgcgcgagcgcgaaatcatcaag
gatgaaaacaagttccgcgagctcgaccagcaattccgcccctccggcttcaaggccatg
atgggcgcggaagccatcaaggaacttcttaagcgcgtcaacgtcgacgagctcgccatc
gaactgcgcgagcgcatgaagaccgaagcttcggcgcagaagaagatcaagtacgccaag
cgccttaaggtcgtcgaggcgttccgcaagtcgtcgaacaagccgcagtggatgattctc
gacgtgctgccggtcattcctcctgagctgcgccccctggtgccgctggatggcggccgc
ttcgccacgtcggatctcaacgacctctatcgccgcgtcatcaaccgcaacaaccggttg
aagaagctgatggacctgcacgcgcctgaagtcattgtgcgcaacgaaaagcgcatgctc
caggaagcggttgacgctctgttcgacaacggccgtcgcggccgtgtgctgcgcggcgcc
aacaaccgtccgctcaagtcgctctctgacacgcttaagggcaagcagggtcgcttccgt
cagaaccttctcggtaagcgcgtcgactactcgggccgttcggtgatcgtggtcggaccc
gagctcaaattgcaccagtgcggcctgcccaagaagatggcgctcgagctcttcaagccg
ttcatctatcaccgccttgagcagaccggccactgcaccaccatcaagcaggccaaggaa
atggtggagatgcaggaaccggtggtctgggacattcttgaagaagtcatcaaggaccat
cccgtgctgctgaaccgcgccccaacccttcaccggctgggcatccaggctttcgagccc
gtgctcgtggaaggcaaggccatcaaaattcacccgctcgtctgcaccgcattcaacgcg
gacttcgacggtgaccagatggctgtgcacattccgctgtcgcctgaagcgcagattgaa
gcgtcggtgctcatgctcgcgtcgcacaacatcctgtcgcccgcgtcgggtcagcccatc
accgtgcccacccaggacatggtgctcggactttactacctgacgaaggctcacaagggg
gcgaagggcgaaggccgcgtgttcgcgaatacggaagaagtgctgatggcgctcgaagcg
aaggagctcgagacgctctcgccgatccgtctgcgctacaccggcaaggtcctcgacatg
accacggcgtacgacgatcaggatctgacgcacaccgaggcagtcgactttgacggcgac
tacatcaacaccaccgtgggccgggtgatcctgaacgacgcgctgccggcgggcatgccg
ttcatcaacggcctgctcaagaagaagggcatcggccagctggtgaactattgcaaccag
aacctcggactcgaggtgacggtgcgcatgctcgaccgaatcaagtcgctcggcttccag
ttcgccacgcgctcgggtctgtcggttggtctggacgacatggtcatcccggcgtcgaag
tacaccgtcgttgaagaagccgaccgcaaggtgatcgaagtccagaagcagtacatggac
ggcgccattaccaacggcgagcgttcgaacaaggtcatccagatgtggtcggccgttacc
gataaggtcgcggacgaaatgttcggcaacatgaagcgcgcggacgaagaaggcgccatg
aacccgatctacatcatggccgactccggcgcccgtggttcgaagcagcagatccgtcag
ctctcgggtatgcgcggactgatggccaagccctcgggcgaagtcatcgaaacccccatc
accgcgaacttccgcgaaggcctcacggtgctcgagtacttcatctcgacgcacggtgct
cgtaagggtctggccgatacggctctcaagacggccgactcgggctacctcacccgccgt
ctcgtcgacgtggcgcaggacgtcatcgtcaccgagtacgactgcggaacgagcgaaggt
attgacgtcaccgccatcgtcgagtcgggcgagattatcgagccgctgcgcgaccgcatc
atcggccgcgtgtcgctcgagaagatcaaggactacgacggcaacgttgtcatcgagatc
aaccagcagatcgatgaagacatcgcttccgccattcagggcgcgggcgttgagaaggtg
aagattcgctccgtgctcacctgcgaatcgcgtcgcggcgtttgcgctctgtgctacggc
cgtaacctcggctcaggccgcatggtcgaactcggcgaaacctgcggcgtcatcgcagcg
cagtccatcggagagcccggcacgcagctcaccatgcgtaccttccacgtcggcggcacg
gccagccgtgttgctgaccagtcacgcctcgatgccaagaacaacggcaccgtgcgctac
ttcaacctgaacaccgtcgaaagcaaggacggctcgcaggtcgccatgaaccgctccggc
tcgattgccatcgtcgacgaccgcaatcgcgagaaggagcgctacgtggtggtctatggt
gcgcgcctgaaggtgaaggatggagacaaggtaaagctcggcgatctgctggctgagtgg
gatccttacacctactccattctcacggaaatcggcggcacggtgcagttcaaggacctg
caggaaggcatcacgctcaacgaagaagtcgacgaagtcaccggcctctcgcgttgggtt
gtggccgacgctcccgatgagaagcgtcagcccaccttcgtggtcaagggctccaagggc
agcaagcgttacctgctgccgcgcggcgctcacctcatgatcgaagatggtgcggaagtc
ggccctggcgatgtgctcgcgaagatcccgaaggagtcgacgcgtaccaaggacatcacc
ggcggtctgcctcgcgtggtcgaactgttcgaagcccgcaagccgcgtgaaaccgcgatc
atcagcgagatcgatggcgtggttcgcttcggtgaagtcaccaagggccagcgcaagatc
tacgtgacggctgacaacggcgaggagaaggaatactccgtgccgcgcggtactcacgtc
aacgtgcaggaaggcgagcgtctgcgtgccggcgatcctctcatggatgggccgctgaac
ccgcacgacattctcgacgttctcggcgagaaggaactgcagaagtacctggtgaacgaa
atccaggaagtctaccgtctgcagggcgtggccatctccgacaagcacatcgaagtgatt
gtccggcagatgctgcgctgggtccgcatcgacgatatcggcgactccaacttcctgctc
gaacagcaggtcgatcgcttccgcttcaacgaggaaaagaaccgcgtggagaaggaaggc
ggccgtccgccgcagggtcgtccgctgctgctcggcatcaccaaggcatcgctctcgacc
gacagcttcatctccgccgcttcgttccaggaaacgacgcgcgtgctgacggaagcttcg
atcaacggcgcaatcgacaacctgcgcggactcaaggagaacgtgatcgtcggacgtctc
atcccggcgggcacaggcctcgagtactaccgcaacgtccagctctctccggaactggaa
gaagcggcagcccgcgtccagcaggaagttcacgccgagatcgaagctgcagagcgcgaa
ctggaaatgatgcgccaggaaggcgaagccgaagaaatggccgccgaataa
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integrated database retrieval system
