KEGG   PATHWAY: osa00970
Entry
osa00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Oryza sativa japonica (Japanese rice) (RefSeq)
Class
Genetic Information Processing; Translation
Pathway map
osa00970  Aminoacyl-tRNA biosynthesis
osa00970

Organism
Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
Gene
3131366  OrsajCt150; tRNA-Ala [KO:K14218]
3131378  OrsajCt156; tRNA-Ala [KO:K14218]
3131374  OrsajCt155; tRNA-Arg [KO:K14219]
3131351  OrsajCt136; tRNA-Arg [KO:K14219]
6450163  trnR; tRNA-Arg [KO:K14219]
3131370  OrsajCt151; tRNA-Arg [KO:K14219]
3131371  OrsajCt152; tRNA-Asn [KO:K14220]
3131373  OrsajCt154; tRNA-Asn [KO:K14220]
3131349  OrsajCt134; tRNA-Asp [KO:K14221]
6450190  trnD; tRNA-Asp [KO:K14221]
3131350  OrsajCt135; tRNA-Cys [KO:K14222]
6450176  trnC; tRNA-Cys [KO:K14222]
6450186  trnQ; tRNA-Gln [KO:K14223]
3131340  OrsajCt122; tRNA-Gln [KO:K14223]
6450160  trnE; tRNA-Glu [KO:K14224]
3131347  OrsajCt132; tRNA-Glu [KO:K14224]
3131343  OrsajCt125; tRNA-Gly [KO:K14225]
3131360  OrsajCt145; tRNA-His [KO:K14226]
3131384  OrsajCt161; tRNA-His [KO:K14226]
6450165  trnH; tRNA-His [KO:K14226]
3131365  OrsajCt149; tRNA-Ile [KO:K14227]
3131379  OrsajCt157; tRNA-Ile [KO:K14227]
3131372  OrsajCt153; tRNA-Leu [KO:K14228]
3131354  OrsajCt139; tRNA-Leu [KO:K14228]
3131362  OrsajCt147; tRNA-Leu [KO:K14228]
3131382  OrsajCt159; tRNA-Leu [KO:K14228]
3131339  trnK; tRNA-Lys [KO:K14229]
3131357  OrsajCt142; tRNA-Met [KO:K14230]
6450127  trnM; tRNA-Met [KO:K14230]
6450187  trnM; tRNA-Met [KO:K14230]
3131361  OrsajCt146; tRNA-Ile [KO:K14230]
3131383  OrsajCt160; tRNA-Ile [KO:K14230]
3131344  OrsajCt127; tRNA-Met [KO:K14230]
6450158  trnfM; tRNA-Met [KO:K14230]
6450184  trnI; tRNA-Ile [KO:K14230]
3131355  OrsajCt140; tRNA-Phe [KO:K14231]
6450188  trnF; tRNA-Phe [KO:K14231]
6450194  trnP; tRNA-Pro [KO:K14232]
3131359  OrsajCt144; tRNA-Pro [KO:K14232]
6450141  trnP; pseudogene [KO:K14232]
3131342  OrsajCt124; tRNA-Ser [KO:K14233]
6450131  trnS; tRNA-Ser [KO:K14233]
6450199  trnS; tRNA-Ser [KO:K14233]
3131341  OrsajCt123; tRNA-Ser [KO:K14233]
3131352  OrsajCt137; tRNA-Ser [KO:K14233]
6450153  trnS; tRNA-Ser [KO:K14233]
3131346  OrsajCt130; tRNA-Thr [KO:K14234]
3131353  OrsajCt138; tRNA-Thr [KO:K14234]
3131358  OrsajCt143; tRNA-Trp [KO:K14235]
6450125  trnW; tRNA-Trp [KO:K14235]
6450129  trnY; tRNA-Tyr [KO:K14236]
3131348  OrsajCt133; tRNA-Tyr [KO:K14236]
3131363  OrsajCt148; tRNA-Val [KO:K14237]
3131381  OrsajCt158; tRNA-Val [KO:K14237]
4328118  glutamate--tRNA ligase, chloroplastic/mitochondrial [KO:K01885] [EC:6.1.1.17]
4325167  glutamate--tRNA ligase, cytoplasmic [KO:K01885] [EC:6.1.1.17]
4348464  glutamate--tRNA ligase, cytoplasmic [KO:K01885] [EC:6.1.1.17]
4337177  LOW QUALITY PROTEIN: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like [KO:K02433] [EC:6.3.5.6 6.3.5.7]
4350686  glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [KO:K02434] [EC:6.3.5.6 6.3.5.7]
4333591  glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [KO:K02435] [EC:6.3.5.6 6.3.5.7]
4337996  glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
4325653  glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
4348211  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
9266147  alanine--tRNA ligase, chloroplastic/mitochondrial [KO:K01872] [EC:6.1.1.7]
107281758  alanine--tRNA ligase-like [KO:K01872] [EC:6.1.1.7]
4328255  aspartate--tRNA ligase 2, cytoplasmic [KO:K22503] [EC:6.1.1.12]
4330354  aspartate--tRNA ligase 2, cytoplasmic [KO:K22503] [EC:6.1.1.12]
4324505  aspartate--tRNA ligase, chloroplastic/mitochondrial [KO:K01876] [EC:6.1.1.12]
4352065  asparagine--tRNA ligase, cytoplasmic 2 [KO:K01893] [EC:6.1.1.22]
4343250  asparagine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01893] [EC:6.1.1.22]
4325717  asparagine--tRNA ligase, cytoplasmic 3 [KO:K01893] [EC:6.1.1.22]
4346171  glycine--tRNA ligase, mitochondrial 1 [KO:K01880] [EC:6.1.1.14]
4335708  glycine--tRNA ligase, mitochondrial 1 [KO:K01880] [EC:6.1.1.14]
4339847  glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [KO:K14164] [EC:6.1.1.14]
4345200  threonine--tRNA ligase, mitochondrial 1 [KO:K01868] [EC:6.1.1.3]
4329580  threonine--tRNA ligase, chloroplastic/mitochondrial 2 [KO:K01868] [EC:6.1.1.3]
4350906  serine--tRNA ligase, chloroplastic/mitochondrial [KO:K01875] [EC:6.1.1.11]
4324679  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
4347821  cysteine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01883] [EC:6.1.1.16]
4348825  cysteine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01883] [EC:6.1.1.16]
9270000  cysteine--tRNA ligase, chloroplastic/mitochondrial [KO:K01883] [EC:6.1.1.16]
4341140  probable methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
4332018  methionine--tRNA ligase, chloroplastic/mitochondrial [KO:K01874] [EC:6.1.1.10]
4348562  probable methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
4324118  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
4333799  valine--tRNA ligase, mitochondrial 1 [KO:K01873] [EC:6.1.1.9]
9267455  valine--tRNA ligase, mitochondrial 1 [KO:K01873] [EC:6.1.1.9]
4342467  valine--tRNA ligase, chloroplastic/mitochondrial 2 [KO:K01873] [EC:6.1.1.9]
4332758  valine--tRNA ligase, mitochondrial 1 isoform X1 [KO:K01873] [EC:6.1.1.9]
4346920  leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
4326033  LOW QUALITY PROTEIN: leucine--tRNA ligase, chloroplastic/mitochondrial [KO:K01869] [EC:6.1.1.4]
4347497  leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
9272228  leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
4330908  isoleucine--tRNA ligase, chloroplastic/mitochondrial [KO:K01870] [EC:6.1.1.5]
9270869  isoleucine--tRNA ligase, cytoplasmic [KO:K01870] [EC:6.1.1.5]
9272464  LOW QUALITY PROTEIN: isoleucine--tRNA ligase, cytoplasmic [KO:K01870] [EC:6.1.1.5]
4330025  lysine--tRNA ligase, chloroplastic/mitochondrial [KO:K04567] [EC:6.1.1.6]
4333345  lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
4337898  arginine--tRNA ligase, cytoplasmic isoform X1 [KO:K01887] [EC:6.1.1.19]
4324056  arginine--tRNA ligase, cytoplasmic [KO:K01887] [EC:6.1.1.19]
4352148  proline--tRNA ligase, cytoplasmic [KO:K01881] [EC:6.1.1.15]
4342480  proline--tRNA ligase, chloroplastic/mitochondrial [KO:K01881] [EC:6.1.1.15]
4337830  histidine--tRNA ligase, cytoplasmic [KO:K01892] [EC:6.1.1.21]
4330767  histidine--tRNA ligase, chloroplastic/mitochondrial [KO:K01892] [EC:6.1.1.21]
4348566  phenylalanine--tRNA ligase alpha subunit, cytoplasmic [KO:K01889] [EC:6.1.1.20]
4352408  phenylalanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01889] [EC:6.1.1.20]
4339585  phenylalanine--tRNA ligase beta subunit, cytoplasmic [KO:K01890] [EC:6.1.1.20]
4324476  tyrosine--tRNA ligase, chloroplastic/mitochondrial [KO:K01866] [EC:6.1.1.1]
4344663  tyrosine--tRNA ligase 1, cytoplasmic [KO:K01866] [EC:6.1.1.1]
4330562  tyrosine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01866] [EC:6.1.1.1]
4344270  tyrosine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01866] [EC:6.1.1.1]
9269094  tyrosine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01866] [EC:6.1.1.1]
9271247  tyrosine--tRNA ligase 1, cytoplasmic [KO:K01866] [EC:6.1.1.1]
4344859  tyrosine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01866] [EC:6.1.1.1]
107276265  tyrosine--tRNA ligase 1, cytoplasmic-like isoform X1 [KO:K01866] [EC:6.1.1.1]
4326551  tryptophan--tRNA ligase, chloroplastic/mitochondrial isoform X1 [KO:K01867] [EC:6.1.1.2]
4352435  tryptophan--tRNA ligase, cytoplasmic [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
osa00250  Alanine, aspartate and glutamate metabolism
osa00260  Glycine, serine and threonine metabolism
osa00270  Cysteine and methionine metabolism
osa00290  Valine, leucine and isoleucine biosynthesis
osa00300  Lysine biosynthesis
osa00330  Arginine and proline metabolism
osa00340  Histidine metabolism
osa00380  Tryptophan metabolism
osa00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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