KEGG   PATHWAY: osa03060
Entry
osa03060                    Pathway                                
Name
Protein export - Oryza sativa japonica (Japanese rice) (RefSeq)
Description
The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
osa03060  Protein export
osa03060

Other DBs
GO: 0043952 0043953
Organism
Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
Gene
4349143  mitochondrial inner membrane protein OXA1-like [KO:K03217]
4334759  ALBINO3-like protein 1, chloroplastic isoform X1 [KO:K03217]
4324524  inner membrane protein PPF-1, chloroplastic isoform X1 [KO:K03217]
4331399  mitochondrial inner membrane protein OXA1-like [KO:K03217]
4349987  protein translocase subunit SECA2, chloroplastic isoform X1 [KO:K03070] [EC:7.4.2.8]
4327279  protein translocase subunit SECA1, chloroplastic [KO:K03070] [EC:7.4.2.8]
4339274  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
4324712  signal recognition particle 54 kDa protein 2 [KO:K03106] [EC:3.6.5.4]
4349809  signal recognition particle 54 kDa protein, chloroplastic [KO:K03106] [EC:3.6.5.4]
9267495  signal recognition particle 54 kDa protein, chloroplastic [KO:K03106] [EC:3.6.5.4]
4325387  cell division protein FtsY homolog, chloroplastic [KO:K03110]
4346811  protein transport protein Sec61 subunit alpha [KO:K10956]
4332042  protein transport protein Sec61 subunit alpha [KO:K10956]
4345097  preprotein translocase subunit SECY, chloroplastic [KO:K10956]
4346809  protein transport protein Sec61 subunit alpha [KO:K10956]
4347548  protein transport protein Sec61 subunit alpha isoform 2 [KO:K10956]
107276128  protein transport protein Sec61 subunit alpha-like [KO:K10956]
107276600  protein transport protein Sec61 subunit alpha-like 1 [KO:K10956]
4327929  protein transport protein Sec61 subunit beta [KO:K09481]
9271333  protein transport protein Sec61 subunit beta [KO:K09481]
9266625  protein transport protein Sec61 subunit beta [KO:K09481]
9269540  protein transport protein Sec61 subunit beta [KO:K09481]
4328492  protein transport protein Sec61 subunit gamma [KO:K07342]
4341707  protein transport protein Sec61 subunit gamma-like [KO:K07342]
4329219  uncharacterized protein LOC4329219 [KO:K12275]
4335435  dnaJ protein ERDJ2A [KO:K09540]
4328075  luminal-binding protein 3 [KO:K09490] [EC:3.6.4.10]
4339788  luminal-binding protein [KO:K09490] [EC:3.6.4.10]
4338866  luminal-binding protein 2 [KO:K09490] [EC:3.6.4.10]
4333877  luminal-binding protein 4 [KO:K09490] [EC:3.6.4.10]
4340470  luminal-binding protein 4 [KO:K09490] [EC:3.6.4.10]
9266859  uncharacterized protein LOC9266859 [KO:K09490] [EC:3.6.4.10]
4344882  luminal-binding protein 2 [KO:K09490] [EC:3.6.4.10]
4338568  luminal-binding protein 2 [KO:K09490] [EC:3.6.4.10]
107275251  luminal-binding protein 5-like [KO:K09490] [EC:3.6.4.10]
4340680  signal recognition particle 9 kDa protein [KO:K03109]
4337050  signal recognition particle 14 kDa protein isoform X1 [KO:K03104]
4324904  signal recognition particle subunit SRP72 [KO:K03108]
4345269  signal recognition particle subunit SRP68 isoform X1 [KO:K03107]
4340957  signal recognition particle 19 kDa protein [KO:K03105]
4345847  signal recognition particle receptor subunit alpha [KO:K13431]
4346082  signal recognition particle receptor subunit beta [KO:K12272]
4324478  sec-independent protein translocase protein TATC, chloroplastic [KO:K03118]
4328965  chloroplast processing peptidase isoform X1 [KO:K03100] [EC:3.4.21.89]
4347239  thylakoidal processing peptidase 1, chloroplastic [KO:K03100] [EC:3.4.21.89]
4352133  probable signal peptidase complex subunit 1 [KO:K12946] [EC:3.4.-.-]
4335967  probable signal peptidase complex subunit 2 [KO:K12947] [EC:3.4.-.-]
4329702  probable signal peptidase complex subunit 2 [KO:K12947] [EC:3.4.-.-]
4347817  signal peptidase complex subunit 3B [KO:K12948] [EC:3.4.-.-]
4325792  probable signal peptidase complex subunit 3 [KO:K12948] [EC:3.4.-.-]
4338334  signal peptidase complex catalytic subunit SEC11A [KO:K13280] [EC:3.4.21.89]
4340738  signal peptidase complex catalytic subunit SEC11A [KO:K13280] [EC:3.4.21.89]
4331226  signal peptidase complex catalytic subunit SEC11A isoform X1 [KO:K13280] [EC:3.4.21.89]
107280467  signal peptidase complex catalytic subunit SEC11A-like [KO:K13280] [EC:3.4.21.89]
4350939  mitochondrial inner membrane protease subunit 1 isoform X1 [KO:K09647] [EC:3.4.21.-]
4335047  mitochondrial inner membrane protease subunit 2 [KO:K09648] [EC:3.4.21.-]
9271486  mitochondrial inner membrane protease subunit 2 [KO:K09648] [EC:3.4.21.-]
Reference
  Authors
Dalbey RE, Robinson C.
  Title
Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane.
  Journal
Trends Biochem Sci 24:17-22 (1999)
DOI:10.1016/S0968-0004(98)01333-4
Reference
  Authors
Berks BC, Sargent F, Palmer T.
  Title
The Tat protein export pathway.
  Journal
Mol Microbiol 35:260-74 (2000)
DOI:10.1046/j.1365-2958.2000.01719.x
Reference
  Authors
Wexler M, Sargent F, Jack RL, Stanley NR, Bogsch EG, Robinson C, Berks BC, Palmer T.
  Title
TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export.
  Journal
J Biol Chem 275:16717-22 (2000)
DOI:10.1074/jbc.M000800200
Reference
  Authors
Jongbloed JD, Martin U, Antelmann H, Hecker M, Tjalsma H, Venema G, Bron S, van Dijl JM, Muller J.
  Title
TatC is a specificity determinant for protein secretion via the twin-arginine translocation pathway.
  Journal
J Biol Chem 275:41350-7 (2000)
DOI:10.1074/jbc.M004887200
Reference
  Authors
Rapoport TA
  Title
Protein translocation across the eukaryotic endoplasmic reticulum and bacterial plasma membranes.
  Journal
Nature 450:663-9 (2007)
DOI:10.1038/nature06384
Reference
  Authors
Flower AM
  Title
The SecY translocation complex: convergence of genetics and structure.
  Journal
Trends Microbiol 15:203-10 (2007)
DOI:10.1016/j.tim.2007.03.001
Reference
  Authors
Osborne AR, Rapoport TA, van den Berg B
  Title
Protein translocation by the Sec61/SecY channel.
  Journal
Annu Rev Cell Dev Biol 21:529-50 (2005)
DOI:10.1146/annurev.cellbio.21.012704.133214
Reference
  Authors
Paetzel M, Karla A, Strynadka NC, Dalbey RE
  Title
Signal peptidases.
  Journal
Chem Rev 102:4549-80 (2002)
DOI:10.1021/cr010166y
Reference
  Authors
Paetzel M, Dalbey RE, Strynadka NC
  Title
The structure and mechanism of bacterial type I signal peptidases. A novel antibiotic target.
  Journal
Pharmacol Ther 87:27-49 (2000)
DOI:10.1016/S0163-7258(00)00064-4
Reference
  Authors
Ng SY, Chaban B, VanDyke DJ, Jarrell KF
  Title
Archaeal signal peptidases.
  Journal
Microbiology 153:305-14 (2007)
DOI:10.1099/mic.0.2006/003087-0
Reference
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03060   
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