KEGG   Oryza sativa japonica (Japanese rice): 107276210
Entry
107276210         CDS       T01015                                 
Name
(RefSeq) protein TWIN SISTER of FT
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    107276210
SSDB
Motif
Pfam: PBP DUF6758
Other DBs
NCBI-GeneID: 107276210
NCBI-ProteinID: XP_015619436
UniProt: B9GCH5 A0A8J8YKZ1
LinkDB
Position
12:join(7274332..7274532,7275112..7275173,7275752..7275792,7276022..7276251)
AA seq 177 aa
MSMSRDPLVVGSIVGDVVDHFGASALLRLFYNHREMTSGSELRPSQVAGEPAVQITGGRD
GRALYTLVMVDPDAPSPSNPSKREYLHWLVTDVPEGGDTSKGTEVVAYESPRPTAGIHRL
VFIVFRQTVRQSIYAPGWRSNFNTRDFAACYSLGSPVAAAYFNCQREGGCGGRRYRS
NT seq 534 nt   +upstreamnt  +downstreamnt
atgagcatgtcgagggacccgctggtggtggggagcatcgtcggcgacgtggtggaccac
ttcggcgcgtcggcgctgctgaggctgttctacaaccaccgcgagatgacgagcgggtcg
gagctcaggccgtcgcaggtcgccggcgagccggccgtccagatcaccggaggccgcgat
gggagggcgctctacacgctcgtaatggtggaccctgatgcacctagccccagcaaccct
tccaaaagggaataccttcattggttggtaactgacgtaccagaaggaggcgatacgagt
aaagggacggaggtggtggcgtacgagagcccgcggccgacagcggggatccaccggttg
gtgttcatcgtgttccggcagacagtgcggcagtccatctacgcgccggggtggcgctcc
aacttcaacaccagggacttcgccgcctgctacagcctcggctcccccgtcgccgccgcc
tacttcaactgccagagggagggcggctgcggcggccggaggtacaggtcatga

KEGG   Oryza sativa japonica (Japanese rice): 107280190
Entry
107280190         CDS       T01015                                 
Name
(RefSeq) protein VERNALIZATION 3-like
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    107280190
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 107280190
NCBI-ProteinID: XP_015627229
LinkDB
Position
2:complement(join(24067810..24068039,24068573..24068613,24068710..24068771,24070067..24070258))
AA seq 174 aa
MSRDPLVVGNVVGDILDPFIKSASLRVLYSNRELTNGSELKPSQVANEPRIEIAGRDMRT
LYTLVMVDPDSPSPSNPTKREYLHWLVTDIPETTNASFGNEIVSYESPKPTAGIHRFVFV
LFRQSVQQTIYAPGWRQNFNTRDFSALYNLGPPVAAVFFNCQRENGCGGRRYIR
NT seq 525 nt   +upstreamnt  +downstreamnt
atgtcaagggatccacttgttgtaggcaatgtggttggggatatcttggacccatttatc
aaatcagcatcactcagagtgctttacagcaatagggaactgactaatggatctgagctc
aagccttcacaagtagcgaacgagccaaggattgagattgctggtcgtgacatgaggaca
ctttacactttggtgatggtggatcctgactcaccaagtccaagcaatccaaccaaaaga
gaataccttcattggttggtgacggacattccagaaacaacaaatgcgagctttggaaat
gagatagtcagctatgaaagtccaaagccaacagcgggaatacatcgctttgtctttgtg
cttttccgtcaatctgtccaacagaccatttatgcacctggatggcgacaaaattttaac
acaagggatttctcggcactttacaacctaggaccaccggtggctgccgtgttcttcaac
tgccaaagagagaatggttgtggtggcagacgatacattagatga

KEGG   Oryza sativa japonica (Japanese rice): 4324585
Entry
4324585           CDS       T01015                                 
Name
(RefSeq) protein FLOWERINGUS T 1
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4324585
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 4324585
NCBI-ProteinID: XP_015611892
UniProt: Q5QNE3 Q0JPK3
LinkDB
Position
1:join(6504340..6504843,6504938..6504999,6508790..6508830,6508961..6509184)
AA seq 276 aa
MTGSSCPADSSQLLYPRRGAPTTTTTSRPPLHPLIAHAPYDVVLHRSVVLSISSARDQAE
LASFWCYIRLGGGASAKRAAGEDDRSRSSLTAARGGGGETMSGRGRGDPLVLGRVVGDVV
DPFVRRVALRVAYGAREVANGCELRPSAVADQPRVAVGGPDMRTFYTLVMVDPDAPSPSD
PNLREYLHWLVTDIPATTGVSFGTEVVCYESPRPVLGIHRLVFLLFEQLGRQTVYAPGWR
QNFSTRDFAELYNLGLPVAAVYFNCQRESGTGGRRM
NT seq 831 nt   +upstreamnt  +downstreamnt
atgacgggcagtagttgtccggccgattcttcccagctgctgtaccctcgccggggtgcc
cccaccaccaccaccacctcccgtcctcctctccatccgctcatcgctcatgcgccctac
gacgtcgtcctccaccgatctgtcgtcctctccatcagctcagctcgtgatcaggctgag
ctcgcgagcttctggtgctatataaggctgggtggtggtgcaagtgcgaagcgagcggcc
ggtgaggacgatcgatcgagatcgagcttgacggcggcgagaggaggaggaggggagacg
atgagcgggcgggggaggggggacccgctggtgctggggagggtggtgggggacgtggtg
gacccgttcgtgaggagggtggcgctgcgggtggcgtacggagcgcgggaggtggccaac
ggctgcgagctccgcccctccgccgtcgccgaccagccccgcgtcgccgtcggcggcccc
gacatgcgcaccttctacaccctggtgatggtggatccggacgcgccgagcccgagcgat
ccaaacctcagggagtacctgcactggctggtcaccgacatcccggctaccacaggagtc
tcttttgggacagaggtggtgtgctacgagagcccgcggccggtgctggggatccacagg
ctggtgttcctgctgttcgagcagctggggcggcagacggtgtacgcaccggggtggcgc
cagaacttcagcacccgcgacttcgccgagctctacaacctcggcctccctgtcgccgcc
gtctacttcaactgccagagggagtctggaaccggaggaagaagaatgtga

KEGG   Oryza sativa japonica (Japanese rice): 4336228
Entry
4336228           CDS       T01015                                 
Name
(RefSeq) protein FLOWERINGUS T
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4336228
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 4336228
NCBI-ProteinID: XP_015633387
UniProt: B9FFU4 Q7XUF1
LinkDB
Position
4:complement(join(24888354..24888583,24889068..24889108,24889225..24889286,24890008..24890199))
AA seq 174 aa
MSRDPLVVGHVVGDILDPFNKSASLKVLYNNKELTNGSELKPSQVANEPRIEIAGRDIRN
LYTLVMVDPDSPSPSNPTKREYLHWLVTDIPESANASYGNEVVSYESPKPTAGIHRFVFI
LFRQYVQQTIYAPGWRPNFNTRDFSALYNLGPPVAAVFFNCQRENGCGGRRYIR
NT seq 525 nt   +upstreamnt  +downstreamnt
atgtcaagggacccacttgtcgtaggacatgttgttggggatatcttagacccattcaac
aaatcagcatcactcaaggtcctatacaacaacaaggaattaacaaatgggtctgagctc
aaaccgtcacaggtagcaaatgaaccaaggattgaaattgctggccgcgacataaggaac
ctttacactctggtgatggtggatcctgactcgccaagtccaagcaacccaacaaaaaga
gaataccttcattggttggtgacagacattccagaatcggcaaatgctagttatggaaat
gaagttgtcagttatgaaagcccaaaaccaactgcagggatacatcgttttgtctttata
ttatttcgccaatatgtacaacagactatttatgcaccaggatggagaccaaatttcaat
acaagagatttttccgcactgtataatcttggacctcctgtggcagcagtgttcttcaat
tgccagagggagaacggatgtggaggcagacggtacattagataa

KEGG   Oryza sativa japonica (Japanese rice): 4340185
Entry
4340185           CDS       T01015                                 
Symbol
Hd3a, OsJ_20191
Name
(RefSeq) protein HEADING DATE 3A
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4340185 (Hd3a)
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 4340185
NCBI-ProteinID: NP_001408118
LinkDB
Position
6:join(3100405..3100611,3100774..3100835,3100969..3101009,3102317..3102546)
AA seq 179 aa
MAGSGRDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGCELKPSMVTHQPRVEVGG
NDMRTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRPTMGIH
RLVFVLFQQLGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNCQREAGSGGRRVYP
NT seq 540 nt   +upstreamnt  +downstreamnt
atggccggaagtggcagggacagggaccctcttgtggttggtagggttgtgggtgatgtg
ctggacgcgttcgtccggagcaccaacctcaaggtcacctatggctccaagaccgtgtcc
aatggctgcgagctcaagccgtccatggtcacccaccagcctagggtcgaggtcggcggc
aatgacatgaggacattctacacccttgtgatggtagacccagatgcaccaagcccaagt
gaccctaaccttagggagtatctacattggttggtcactgatattcctggtactactgca
gcgtcatttgggcaagaggtgatgtgctacgagagcccaaggccaaccatggggatccac
cggctggtgttcgtgctgttccagcagctggggcgtcagacagtgtacgcgcccgggtgg
cgtcagaacttcaacaccaaggacttcgccgagctctacaacctcggctcgccggtcgcc
gccgtctacttcaactgccagcgcgaggcaggctccggcggcaggagggtctacccctag

KEGG   Oryza sativa japonica (Japanese rice): 4341272
Entry
4341272           CDS       T01015                                 
Name
(RefSeq) protein FLOWERINGUS T isoform X1
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4341272
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 4341272
NCBI-ProteinID: XP_015641828
UniProt: A3BCN0 Q5Z9D9
LinkDB
Position
6:complement(join(21830035..21830261,21831467..21831507,21831595..21831656,21832033..21832224))
AA seq 173 aa
MANDSLTRSHIVGDVLDQFSNSVPLTVMYDGRPVFNGKEFRSSAVSMKPRVEIGGDDFRF
AYTLVMVDPDAPNPSNPTLREYLHWMVTDIPSSTDDSFGREIVTYESPSPTMGIHRIVMV
LYQQLGRGTVFAPQVRQNFNLRSFARRFNLGKPVAAMYFNCQRPTGTGGRRPT
NT seq 522 nt   +upstreamnt  +downstreamnt
atggcaaatgactcattgacaaggagccatatagttggagatgtgttagaccaattttca
aactcagtgcctctaactgtgatgtatgatgggaggcctgtgtttaatggcaaggagttc
cgttcctcggcagtctcgatgaaacctagagttgagattggtggcgatgattttcgattt
gcctataccctagttatggtggatcctgatgctcctaatcccagcaacccaaccttgagg
gaatacctgcactggatggtgactgatatcccatcatcgacggacgatagctttgggcgg
gagatcgtaacatacgaaagcccaagccccaccatgggcatccaccgcatcgtgatggtg
ttgtatcagcagcttgggcgcggcacggtgttcgcgccgcaggtgcgtcagaacttcaac
ctgcgcagcttcgcgcgccgtttcaacctcggcaagccggtggccgccatgtacttcaac
tgccagcgcccgacaggcacaggtgggaggaggccaacctga

KEGG   Oryza sativa japonica (Japanese rice): 9268282
Entry
9268282           CDS       T01015                                 
Name
(RefSeq) protein FLOWERINGUS T isoform X2
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    9268282
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 9268282
NCBI-ProteinID: XP_015611907
LinkDB
Position
9:complement(join(24391708..24391726,24392413..24392629,24394707..24394747,24396251..24396312,24397334..24397531))
AA seq 178 aa
MSRGRDPLALSQVIGDVLDPFIKSAAMRINYGEKEITNGTGVRSSAVFTAPHVEIEGRDQ
TKLYTLVMVDPDAPSPSKPEYREYLHWLVTDIPEAIDARFGNEIVPYEAPRPPAGIHRLV
FVLFKQEARQTVYAPGWRQNFNVRDFSAFYNLGPPVAALYFNCQKESGVGGRRFQGPS
NT seq 537 nt   +upstreamnt  +downstreamnt
atgtcacgaggtagggatcctttggcattgagccaggtaattggcgatgtgttggatcct
ttcataaagtcagctgcaatgaggattaattatggtgagaaggagattacaaatggaact
ggagtacgatcatctgctgttttcactgcaccacatgttgagattgaaggtcgtgaccaa
acgaagctctacacacttgttatggtggatcctgatgcgccaagtccaagcaaaccagaa
tacagggaatatttgcattggttggtgacagacatcccagaggcaatagatgcacgtttt
ggcaatgaaatagttccgtacgaagctccacggccaccggctggaattcatcggcttgtt
tttgtgctattcaaacaggaagcacgacaaacagtttatgctccaggatggcggcaaaat
ttcaacgtcagagatttctctgcattttacaatcttggaccacctgttgctgcattatac
ttcaactgccagaaggagagtggtgttggtggcagaaggtttcagggaccaagttga

KEGG   Oryza sativa japonica (Japanese rice): 9271430
Entry
9271430           CDS       T01015                                 
Name
(RefSeq) protein FLOWERINGUS T 1 isoform X2
  KO
K16223  protein FLOWERING LOCUS T
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    9271430
SSDB
Motif
Pfam: PBP
Other DBs
NCBI-GeneID: 9271430
NCBI-ProteinID: XP_025879506
LinkDB
Position
1:join(5662062..5662253,5662365..5662426,5662599..5662639,5664574..5664821)
AA seq 180 aa
MSSANSLVLGRVIGDVVDLFSPEVTLRVMYNGVRVVNGEDLRPSAVSARPSVEVGGDLHQ
FYTIVMVDPDAPNPSNPTLREYLHWLVTDIPGTTDANYGREVVCYESPRPAAGIHRVAVV
LFRQMARGGVDQPPLLRHNFSTRGFADDHALGAPVAAAFFTCKPEGGTGGRRFRPPSRHS
NT seq 543 nt   +upstreamnt  +downstreamnt
atgtcgtcggcgaacagcctggtgctggggcgggtgatcggcgacgtggtggacctgttc
tcgccggaggtgacgctccgggtgatgtacaacggcgtgcgggtcgtcaacggcgaggac
ctccggccgtcggcggtgtcggcgaggcccagcgtcgaggtcggaggggatctccaccag
ttctacacgatcgtgatggtggatccagatgctccaaacccaagcaatccgacgttgaga
gagtacttacactggttggtgacagatattcctggaacaactgatgcgaactatgggcgc
gaggtggtgtgctacgagagcccccggccagcggcggggatccaccgggtggcggtggtg
ctgttccggcagatggcgcgcggcggcgtggaccagccgccgctgctccgccacaacttc
tccacccgcggcttcgccgacgaccacgccctcggcgcccccgtcgccgccgccttcttc
acctgcaagcccgagggcggcaccggcggccgccgcttccggccaccgtcacggcatagc
tag

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